DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000117 dme-miR-12 35596 coro uggucAUGGA-CUACAUUAUGAGu ||| | || ||||||| acauaUACAUACAU-AAAUACUCu 2 19 969 991 [dm3:2R:2749576-2749598:-] 0.5630 143 7 -9.86 -1.2448 MIMAT0000330 dme-miR-184* 35596 coro gccccgcucucUUACUAUUCc ||||||||| uuguucaaacuAAUGAUAAGc 2 11 733 753 [dm3:2R:2749814-2749834:-] 0.5507 150 7 -8.38 -1.0391 MIMAT0000343 dme-miR-280 35596 coro auaGUA-AAGUAUACGU-UGCAUUUAUGu :|| | ||||| || || ||||||| gacUAUAUACAUAUACAUACAUAAAUACu 2 25 961 989 [dm3:2R:2749578-2749606:-] 0.5630 174 7 -12.19 -1.1472 MIMAT0000388 dme-miR-303 35596 coro uggucaaaggacacUUUGGAUUu |||||||| caaaaauauauaaaAAACCUAAc 2 10 338 360 [dm3:2R:2750207-2750229:-] 0.5756 145 7 -10.16 -1.0355 MIMAT0005502 dme-miR-985 35596 coro acgggcUGGUAACCUUG-UAAAc ||||| | ||| |||| uaagaaACCAUCGAAACUAUUUu 2 17 807 829 [dm3:2R:2749738-2749760:-] 0.4909 128 0 -7.53 -1.0568 MIMAT0005021 dme-miR-1008 35596 coro acaUUUG--UGUUUUUCGACAcu |||| |::| ||||||| uucAAACUAAUGAUAAGCUGUau 3 19 736 758 [dm3:2R:2749809-2749831:-] 0.5507 141 0 -9.31 -0.1543 MIMAT0005022 dme-miR-1009 35596 coro gacuUUAC-AUU-GUUA-AAAACUcu |||| ||| | :| |||||| aacuAAUGAUAAGCUGUAUUUUGAaa 3 20 740 765 [dm3:2R:2749802-2749827:-] 0.5507 136 0 -4.89 -0.1901 MIMAT0005026 dme-miR-1013 35596 coro gcUCAAGCCGUAUGAAAAua | ||: |: ||||||| aaAAUUU-GUUUACUUUUcu 3 19 834 852 [dm3:2R:2749715-2749733:-] 0.4909 132 0 -6.08 -0.1437 MIMAT0011784 dme-miR-2279* 35596 coro uuaAAGUGUGUGUCUA-UAAAUu | :|:|:||| || ||||| uacUCUAUAUACAAAUAAUUUAc 2 20 986 1008 [dm3:2R:2749559-2749581:-] 0.5630 131 0 -7.52 -1.2057 MIMAT0011784 dme-miR-2279* 35596 coro uuaaagugugugucuAUAAAUu |||||| cauuaugguuucgauUAUUUAu 2 8 158 179 [dm3:2R:2750388-2750409:-] 0.5756 120 6 -4.97 -0.1336 MIMAT0011791 dme-miR-2283 35596 coro uaacagcauaaguacuAUAAAAg |||||| aagaaaccaucgaaacUAUUUUu 2 8 808 830 [dm3:2R:2749737-2749759:-] 0.4909 120 6 -2.93 -0.1216 MIMAT0012194 dme-miR-307-as* 35596 coro ggUAGU-GUUGGAG-GAACUCACu ||:| |:| || ||||||| auAUUAGCGAAAUCAGUUGAGUGc 2 21 193 216 [dm3:2R:2750351-2750374:-] 0.5756 150 7 -16.85 -0.1521 MIMAT0012195 dme-miR-307-as 35596 coro cugAGU-GAGUUGGACCCACACu ||| :| |:: ||||||| aaaUCAGUUGAGUGCGGGUGUGg 2 20 202 224 [dm3:2R:2750343-2750365:-] 0.5756 150 7 -18.80 -0.1620 MIMAT0012196 dme-miR-2489 35596 coro ugacguUUAUGUUGUAUGUUAu || |||| ||||||| cggaauAAAACAAAAUACAAUg 2 17 1018 1039 [dm3:2R:2749528-2749549:-] 0.5630 164 7 -11.75 -0.7671 MIMAT0012196 dme-miR-2489 35596 coro ugacGUUUAU--GUUGUAUGUUau :||||| | |:|||||| uacaUAAAUACUCUAUAUACAAau 3 19 978 1001 [dm3:2R:2749566-2749589:-] 0.5630 141 0 -12.71 -0.1881 MIMAT0012196 dme-miR-2489 35596 coro ugacGUUUAUGUUGUAUGU-UAu ::|| || |:||||| || aaaaUGAAGACUAUAUACAUAUa 2 19 953 975 [dm3:2R:2749592-2749614:-] 0.5630 126 0 -8.18 -1.2455 MIMAT0012199 dme-miR-2492 35596 coro aaacuuucgagagcUGUUUUGUa |:|||||| caauuugauacggaAUAAAACAa 2 10 1008 1030 [dm3:2R:2749537-2749559:-] 0.5630 129 6 -8.46 -0.1233 MIMAT0012215 dme-miR-2500 35596 coro gacuccAGGUGUGUGUUUUAGg |:::|:| ||||||| cuacauUUUGCGCCCAAAAUCa 2 17 368 389 [dm3:2R:2750178-2750199:-] 0.5756 156 7 -11.86 -0.3396 MIMAT0012215 dme-miR-2500 35596 coro gacuccaggUGUG-UGUUUUAGg |::| |||||||| uaacaauaaAUGCAACAAAAUCa 2 14 775 797 [dm3:2R:2749770-2749792:-] 0.5507 148 7 -9.31 -1.1949 MIMAT0012215 dme-miR-2500 35596 coro gacuccAGGUGUGUGUUUUAGg |:|::| ||||||: uucguuUUCGUAAUCAAAAUUu 2 17 709 730 [dm3:2R:2749837-2749858:-] 0.5507 136 0 -8.53 -0.1157 MIMAT0012531 dme-miR-10-3p 35596 coro uuuGGAGAGAUCUUG--GCUUAAAc | | || | |: ||||||| uguCGUGUCAAACAUAGCGAAUUUa 2 21 653 677 [dm3:2R:2749890-2749914:-] 0.5252 143 7 -7.90 -0.7176 MIMAT0000319 dme-miR-263a 35596 coro caCUU-AAGA--AGGUCACGGUAAUug ||| || | ||:| | |||||| aaGAACUUAUUGUCUAUUACCAUUAug 3 23 138 164 [dm3:2R:2750403-2750429:-] 0.5756 140 0 -9.01 -0.1019 MIMAT0000332 dme-miR-274 35596 coro uaAUGGGCAAUCACAGCCAGUGUUuu || ||| | ||| |||||| ccUA-CCGAUUUUGUAAUUCACAAcc 3 25 923 947 [dm3:2R:2749620-2749644:-] 0.5630 138 0 -13.11 -0.1183 MIMAT0000342 dme-miR-33 35596 coro guuaCGCUGAUG-UUACGUGGa |: || |: |||||| | aagaGUAACAAUAAAUGCAACa 2 18 770 791 [dm3:2R:2749776-2749797:-] 0.5507 120 0 -6.57 -0.1492 MIMAT0000347 dme-miR-283 35596 coro ucuuaAUGGUCGAC-UAUAAAu || |: ||| |||||| uucugUAACGUCUGUAUAUUUg 2 17 538 559 [dm3:2R:2750008-2750029:-] 0.5756 124 6 -9.72 -0.2804 MIMAT0000362 dme-miR-263b 35596 coro cacuuaagagggucACGGUUc |||||| auaaaacuacauccUGCCAAa 2 8 321 341 [dm3:2R:2750226-2750246:-] 0.5756 120 6 -9.60 -0.2982 MIMAT0000389 dme-miR-31b 35596 coro gucgAUAAGGCUGUAGAACGGu || | ||||| |||| aacaUAAAACUACAUCCUGCCa 2 19 318 339 [dm3:2R:2750228-2750249:-] 0.5756 126 0 -15.53 -0.1567 MIMAT0000400 dme-miR-31a 35596 coro agucgAUACGGCUGUAGAACGGu || | ||||| |||| uaacaUAAAACUACAUCCUGCCa 2 19 317 339 [dm3:2R:2750228-2750250:-] 0.5756 126 0 -16.09 -0.1597 MIMAT0000407 dme-miR-315 35596 coro cgaAAGACUCGUUGUUAGUUUu ||| : ::||||||| uaaUUCGUUUUCGUAAUCAAAa 2 20 706 727 [dm3:2R:2749840-2749861:-] 0.5507 143 7 -10.33 -1.1453 MIMAT0005467 dme-miR-190 35596 coro guUGGUUCUUAUAGUUUGUAUAga |: |||| ||| | |||||| aaAUGAAGACUAU-AUACAUAUac 3 23 954 976 [dm3:2R:2749591-2749613:-] 0.5630 148 0 -11.97 -0.1834 MIMAT0005470 dme-miR-957 35596 coro cggagucaaaaccUGCCAAAGu |:|||||| gucuauuaccauuAUGGUUUCg 2 10 149 170 [dm3:2R:2750397-2750418:-] 0.5756 129 6 -14.69 -0.2646 MIMAT0005474 dme-miR-960 35596 coro cgAUACGUUAGACCUUAUGAGu ||| || | ||||||| caUAUACAUACAUAAAUACUCu 2 21 970 991 [dm3:2R:2749576-2749597:-] 0.5630 152 7 -7.86 -1.2448 MIMAT0005476 dme-miR-962 35596 coro cugUCGU-AGUUAAAGA-GAUGG-AAUa || | |:| | ||| :|||| ||| aaaAGAACUUAUUGUCUAUUACCAUUAu 2 23 136 163 [dm3:2R:2750404-2750431:-] 0.5756 124 0 -10.10 -0.8768 MIMAT0005480 dme-miR-965 35596 coro uuccCCUUUUCG---AU--AUGCGAAu | |:|||| || ||||||| gcuuGUAGAAGCUCGUAGCUACGCUUa 2 19 70 96 [dm3:2R:2750471-2750497:-] 0.5740 148 7 -15.23 -0.5314 MIMAT0005504 dme-miR-987 35596 coro guAGUUAGGUCU-GAUAAAUGAAAu |: || | | :|:|||||||| uuUUUAUAAAAAUUUGUUUACUUUu 2 23 826 850 [dm3:2R:2749717-2749741:-] 0.4909 157 7 -9.25 -1.0424 MIMAT0005504 dme-miR-987 35596 coro guaguuAGGUCUGAU-AAAUGAAAu |:|| : | |||||||| uuuucuUUCAUUUGAUUUUACUUUc 2 19 852 876 [dm3:2R:2749691-2749715:-] 0.4909 149 7 -7.93 -0.9351 MIMAT0005519 dme-miR-999 35596 coro ucuGUGUCA--GAA-UGUCAAUUGu | || | ||| | ||||||| aacCUCAAUCACUUAAGAGUUAACa 2 20 485 509 [dm3:2R:2750058-2750082:-] 0.5756 149 7 -13.17 -0.8741 MIMAT0005520 dme-miR-1000 35596 coro ugacgacacuGUCCUGUUAUa || ||||||| cggaaguuuuCAUGACAAUAg 2 12 567 587 [dm3:2R:2749980-2750000:-] 0.5148 147 7 -9.33 -0.4578 MIMAT0005520 dme-miR-1000 35596 coro ugacgacacuguccUGUUAUa |||||| aaauaauaagaguaACAAUAa 2 8 763 783 [dm3:2R:2749784-2749804:-] 0.5507 120 6 -5.67 -0.1492 MIMAT0005019 dme-miR-1006 35596 coro gaUACUUAUUCUUUAGCUUAAAu :|| || | | ||||||| ucGUGUCAAACAUAGCGAAUUUa 2 22 655 677 [dm3:2R:2749890-2749912:-] 0.5252 153 7 -9.72 -0.7213

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score coro RAID00137925 dme-miR-999-3p miRNA MIMAT0005519 coro mRNA 35596 Prediction 0.2202 coro RAID00340383 dme-miR-263b-5p miRNA MIMAT0000362 coro mRNA 35596 Prediction 0.2381 coro RAID00484546 dme-miR-303-5p miRNA MIMAT0000388 coro mRNA 35596 Prediction 0.1828 coro RAID00492600 dme-miR-31b-5p miRNA MIMAT0000389 coro mRNA 35596 Prediction 0.1828 coro RAID00506225 dme-miR-285-3p miRNA MIMAT0000356 coro mRNA 35596 Prediction 0.1828 coro RAID00627616 dme-miR-315-5p miRNA MIMAT0000407 coro mRNA 35596 Prediction 0.2202 coro RAID00761461 dme-miR-190-5p miRNA MIMAT0005467 coro mRNA 35596 Prediction 0.1828 coro RAID00762875 dme-mir-2a-2 miRNA MI0000118 coro mRNA 35596 Prediction 0.1828 coro RAID00997891 dme-miR-998-3p miRNA MIMAT0005518 coro mRNA 35596 Prediction 0.1828 coro RAID01119384 dme-miR-263a-5p miRNA MIMAT0000319 coro mRNA 35596 Prediction 0.1828 coro RAID01520980 dme-miR-932-5p miRNA MIMAT0005479 coro mRNA 35596 Prediction 0.1828 coro RAID01612029 dme-miR-962-5p miRNA MIMAT0005476 coro mRNA 35596 Prediction 0.1828 coro RAID01695342 dme-miR-1000-5p miRNA MIMAT0005520 coro mRNA 35596 Prediction 0.2381 coro RAID02064219 dme-miR-995-3p miRNA MIMAT0005514 coro mRNA 35596 Prediction 0.1828 coro RAID02147209 dme-miR-10-3p miRNA MIMAT0012531 coro mRNA 35596 Prediction 0.1828 coro RAID02189631 dme-miR-283-5p miRNA MIMAT0000347 coro mRNA 35596 Prediction 0.1828 coro RAID02377344 dme-miR-2c-3p miRNA MIMAT0000411 coro mRNA 35596 Prediction 0.1828 coro RAID02468318 dme-miR-31a-5p miRNA MIMAT0000400 coro mRNA 35596 Prediction 0.1828 coro RAID02499475 dme-miR-965-3p miRNA MIMAT0005480 coro mRNA 35596 Prediction 0.2202 coro RAID02507392 dme-miR-274-5p miRNA MIMAT0000332 coro mRNA 35596 Prediction 0.1828 coro RAID02595412 dme-miR-33-5p miRNA MIMAT0000342 coro mRNA 35596 Prediction 0.2202 coro RAID02758553 dme-mir-281-1 miRNA MI0000366 coro mRNA 35596 Prediction 0.2202 coro RAID03327131 dme-miR-960-5p miRNA MIMAT0005474 coro mRNA 35596 Prediction 0.2202 coro RAID03521689 dme-miR-959-3p miRNA MIMAT0005473 coro mRNA 35596 Prediction 0.1828 coro RAID03540820 dme-miR-1014-3p miRNA MIMAT0005027 coro mRNA 35596 Prediction 0.1828 coro RAID03664793 dme-miR-1006-3p miRNA MIMAT0005019 coro mRNA 35596 Prediction 0.2202 coro RAID03745635 dme-miR-987-5p miRNA MIMAT0005504 coro mRNA 35596 Prediction 0.2202 coro RAID03750571 dme-miR-957-3p miRNA MIMAT0005470 coro mRNA 35596 Prediction 0.1828