DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000117 dme-miR-12 33131 CG14614 uggUCAUGGACUACAUUAUGAGu || | : : | ||||||: uaaAGAAAUAAGCGAAAUACUUa 2 21 810 832 [dm3:X:21854234-21854256:-] 0.5885 128 0 -9.57 -0.1492 MIMAT0000117 dme-miR-12 33131 CG14614 ugGUCAUGGAC-UACAUUAUGAgu || :|: | || |||||| aaCACAGCUAGAAUACAAUACUau 3 22 885 908 [dm3:X:21854158-21854181:-] 0.5885 128 0 -7.55 -0.1028 MIMAT0000343 dme-miR-280 33131 CG14614 auagUAAAGUAUACGUUGCAUUUAUGu ||| | | :|| |||||| augaAUUAAAGAAAUAAGCGAAAUACu 2 24 804 830 [dm3:X:21854236-21854262:-] 0.5885 123 6 -8.89 -0.1184 MIMAT0000343 dme-miR-280 33131 CG14614 auaguaaaguauacguugcaUUUAUGu |||||| uacaaacuaaaagauaaaacAAAUACc 2 8 916 942 [dm3:X:21854124-21854150:-] 0.5885 120 6 -4.29 -0.1922 MIMAT0000360 dme-miR-287 33131 CG14614 cacguuugcuaAAAGUUGUGu | ||||||| uggauuaguucUGUCAACACg 2 11 158 178 [dm3:X:21854888-21854908:-] 0.5056 142 7 -11.23 -0.1561 MIMAT0000363 dme-miR-288 33131 CG14614 guacuuuacuuuagcUGUACUUu ||||||| accucguuuuuucaaACAUGAAu 2 9 548 570 [dm3:X:21854496-21854518:-] 0.4817 140 7 -6.86 -0.6679 MIMAT0000364 dme-miR-289 33131 CG14614 ucagcgUCCGAGGUGAAUUUAUAAAu | |||:: : |||||||| gcaacaACGCUUUUUCGAAAUAUUUu 2 21 660 685 [dm3:X:21854381-21854406:-] 0.4817 156 7 -12.61 -0.6777 MIMAT0000364 dme-miR-289 33131 CG14614 ucagcguccgaggugaauuUAUAAAu |||||| ugcagaagaaaaagaaaucAUAUUUa 2 8 505 530 [dm3:X:21854536-21854561:-] 0.4817 120 6 -7.62 -0.2004 MIMAT0005465 dme-miR-954 33131 CG14614 ugUGUGUUGCGUUGUGGGUcu | || || ||||||||| aaAAAC-ACACAACACCCAca 3 20 83 102 [dm3:X:21854964-21854983:-] 0.5241 145 0 -19.92 -0.1854 MIMAT0005481 dme-miR-966 33131 CG14614 ggUGUGUCGGGUGUUGGGUGu | ||| | || |||||| aaAAACA-CACAACACCCACa 2 20 83 102 [dm3:X:21854964-21854983:-] 0.5241 125 6 -21.70 -0.2051 MIMAT0005488 dme-miR-972 33131 CG14614 cgGAUUUAU---AAGCA-UAACAUgu | ||||| ||: | |||||| acCAAAAUAUGUUUUAUAAUUGUAgu 3 21 375 400 [dm3:X:21854666-21854691:-] 0.6147 134 0 -9.05 -0.1818 MIMAT0011784 dme-miR-2279* 33131 CG14614 uuaaagugugugucUAUAAAUu ||||||| aagaaaaagaaaucAUAUUUAu 2 9 510 531 [dm3:X:21854535-21854556:-] 0.4817 140 7 -2.97 -0.8057 MIMAT0011784 dme-miR-2279* 33131 CG14614 uuaaagugugugucuAUAAAUu |||||| gcuagaauacaauacUAUUUAa 2 8 891 912 [dm3:X:21854154-21854175:-] 0.5885 120 6 -7.76 -0.3006 MIMAT0011788 dme-miR-2281* 33131 CG14614 aacguagacgucgacgUCUAUUa |||||| aaacgacaaaaacaagAGAUAAa 2 8 725 747 [dm3:X:21854319-21854341:-] 0.5545 120 6 -9.31 -0.1651 MIMAT0011788 dme-miR-2281* 33131 CG14614 aacguagacgucgacgUCUAUUa |||||| aaagauacaaacuaaaAGAUAAa 2 8 911 933 [dm3:X:21854133-21854155:-] 0.5885 120 6 -9.31 -0.3181 MIMAT0011791 dme-miR-2283 33131 CG14614 uaacaGCAUAAGUACUAUAAAAg | | |||: ||||||| caacgCUUUUUCGAAAUAUUUUu 2 19 664 686 [dm3:X:21854380-21854402:-] 0.4817 154 7 -9.44 -0.8025 MIMAT0011791 dme-miR-2283 33131 CG14614 uaacagcauaagUACUAUAAAAg || ||:|||| gguauaaccaaaAU-AUGUUUUa 2 12 369 390 [dm3:X:21854676-21854697:-] 0.6147 125 0 -3.91 -0.1268 MIMAT0012196 dme-miR-2489 33131 CG14614 ugacGUUUAUGUUGUAUGUUAu || | :|: ||||||| acaaCACAGCUAGAAUACAAUa 2 19 883 904 [dm3:X:21854162-21854183:-] 0.5885 150 7 -11.73 -1.1796 MIMAT0012196 dme-miR-2489 33131 CG14614 ugACGUUUAUGUUGUAUGUUau | | | | || |||||| aaUACUAUUUAAAGAUACAAac 3 21 901 922 [dm3:X:21854144-21854165:-] 0.5885 132 0 -5.89 -0.1738 MIMAT0012199 dme-miR-2492 33131 CG14614 aaacuUUCGAGAGCUGUUUUGUa :|| ||| | ||||||| uuuucGAG-UCUGGUCAAAACAg 2 19 584 605 [dm3:X:21854461-21854482:-] 0.4817 156 7 -12.19 -0.2855 MIMAT0012199 dme-miR-2492 33131 CG14614 aaacuUUCGAGAGCUGUUUUGUa |||| |:| ||||||| gacuuAAGCAAUUG-CAAAACAa 2 19 770 791 [dm3:X:21854275-21854296:-] 0.5885 156 7 -12.54 -1.1576 MIMAT0012199 dme-miR-2492 33131 CG14614 aaacUUUCGAGAGCUGUUUUGUa ||| : ||:|||||| auacAAACUAAAAGAUAAAACAa 2 20 915 937 [dm3:X:21854129-21854151:-] 0.5885 135 6 -10.84 -0.2628 MIMAT0012199 dme-miR-2492 33131 CG14614 aaacuuucgagagcUGUUUUGua :|||||| aaagaaaaacaaaaGCAAAACca 3 10 745 767 [dm3:X:21854299-21854321:-] 0.5885 121 0 -6.11 -0.1059 MIMAT0012199 dme-miR-2492 33131 CG14614 aaacuuucgagagcugUUUUGUa |||||| aaacaagagauaaagaAAAACAa 2 8 734 756 [dm3:X:21854310-21854332:-] 0.5545 120 6 -6.94 -0.1193 MIMAT0012202 dme-miR-2494* 33131 CG14614 aaggguuagaccaCGUGAAUg ||||||| agaagaggacgaaGCACUUAu 2 9 301 321 [dm3:X:21854745-21854765:-] 0.4763 140 7 -12.08 -0.7239 MIMAT0012217 dme-miR-2501* 33131 CG14614 uuucuuucaaacuaacGUUCUCa |||||| ggaaaaacgacaaaaaCAAGAGa 2 8 721 743 [dm3:X:21854323-21854345:-] 0.5206 120 6 -8.52 -0.2443 MIMAT0000114 dme-miR-9a 33131 CG14614 agUAUG-UCGAUCUAUUGGUUUcu |||: || | ||||||||| uuAUAUAAGGU--AUAACCAAAau 3 22 361 382 [dm3:X:21854684-21854705:-] 0.6147 141 0 -11.41 -0.1870 MIMAT0000347 dme-miR-283 33131 CG14614 ucuuaauggucgacUAUAAAu |||||| aagaaaaagaaaucAUAUUUa 2 8 510 530 [dm3:X:21854536-21854556:-] 0.4817 120 6 -5.49 -0.1985 MIMAT0000355 dme-miR-210 33131 CG14614 aucGGCGACAGUG-UGCGUGUu ::|||| || ||||||| caaUUGCUG-AACAACGCACAg 2 19 42 62 [dm3:X:21855004-21855024:-] 0.5404 151 7 -22.58 -0.3918 MIMAT0000355 dme-miR-210 33131 CG14614 aucGGCGACAGUGUG-CGUGUu |:| || |: || ||||| aaaCUGAUGACGAACUGCACAc 2 19 863 884 [dm3:X:21854182-21854203:-] 0.5885 122 0 -13.57 -0.9531 MIMAT0000365 dme-bantam 33131 CG14614 uuAGUCGAAAGUUUUACUAGAgu |:|||| :|: |||||| ucUUAGCU---GAGUUGAUCUaa 3 22 330 349 [dm3:X:21854717-21854736:-] 0.6147 133 0 -12.18 -0.1218 MIMAT0000392 dme-miR-9c 33131 CG14614 agAUGUCGAUCUUA-UGGUUUcu ||:| :| || |||||| auUAUAUAAGGUAUAACCAAAau 3 21 360 382 [dm3:X:21854684-21854706:-] 0.6147 131 0 -8.30 -0.1870 MIMAT0000395 dme-miR-9b 33131 CG14614 guAUGUCGAUUUUAGUGGUUUcu ||:| :: || |||||| auUAUAUAAGGUAUAACCAAAau 3 22 360 382 [dm3:X:21854684-21854706:-] 0.6147 133 0 -8.92 -0.1887 MIMAT0000396 dme-let-7 33131 CG14614 ugaUAUGUUGGAUGAUGGAGu | ||||: | ||||||| auaACACAAUGUCCUACCUCg 2 19 533 553 [dm3:X:21854513-21854533:-] 0.4817 162 7 -18.52 -0.6625 MIMAT0000407 dme-miR-315 33131 CG14614 cgAAAGACUCGUUGUUAGUUUu | | | || |:|| |||| auUAUAUAAGGUAUAACCAAAa 2 21 360 381 [dm3:X:21854685-21854706:-] 0.6147 124 0 -4.90 -0.1207 MIMAT0000408 dme-miR-316 33131 CG14614 gcGGUCAUUCGCCUUUUU-CUGu ||| || |||||||| ||| auCCAAAAAACGGAAAAACGACa 2 21 710 732 [dm3:X:21854334-21854356:-] 0.5206 140 0 -20.00 -1.1621 MIMAT0000408 dme-miR-316 33131 CG14614 gcggucauucgccuUUUUCUGu ||||||: uaaagauacaaacuAAAAGAUa 2 9 910 931 [dm3:X:21854135-21854156:-] 0.5885 124 0 -10.55 -0.2858 MIMAT0005474 dme-miR-960 33131 CG14614 cgauacGUUAGACCUUAUGAGu :|| | | ||||||: aagaaaUAAGC-GAAAUACUUa 2 17 812 832 [dm3:X:21854234-21854254:-] 0.5885 130 0 -8.81 -0.1478 MIMAT0005474 dme-miR-960 33131 CG14614 cgauacguuagaccUUAUGAgu |||||| cacagcuagaauacAAUACUau 3 9 887 908 [dm3:X:21854158-21854179:-] 0.5885 120 0 -7.95 -0.1017 MIMAT0005478 dme-miR-964 33131 CG14614 uucaaUUCGAGGGGAUAAGAUu ||| | |:||||||| ggacgAAG--CACUUAUUCUAg 2 18 307 326 [dm3:X:21854740-21854759:-] 0.5455 150 7 -15.14 -0.5140 MIMAT0005483 dme-miR-1002 33131 CG14614 agcgggaaacauaggugAUGAAUu |||||| uaaagaaauaagcgaaaUACUUAc 2 8 810 833 [dm3:X:21854233-21854256:-] 0.5885 120 6 -5.53 -0.1795 MIMAT0005485 dme-miR-969 33131 CG14614 uuuUGAACGAAUCACC-UUGAg |:|||| |: ||| |||| uacAUUUGC-UGUUGGUAACUu 2 19 111 131 [dm3:X:21854935-21854955:-] 0.5241 124 0 -14.90 -0.2959 MIMAT0005504 dme-miR-987 33131 CG14614 guaguuAGGUCUG-AUAAAUGAAAu || | |: | |||||||| gcuuuuUCGAAAUAUUUUUACUUUg 2 19 668 692 [dm3:X:21854374-21854398:-] 0.4817 153 7 -9.20 -0.8962 MIMAT0005507 dme-miR-137 33131 CG14614 gauGCACAUAAGAGUUCGUUAu | || | ||:||||||| aacCAUGGA--CUUAAGCAAUu 2 20 763 782 [dm3:X:21854284-21854303:-] 0.5885 152 7 -12.91 -0.9645 MIMAT0005516 dme-miR-252 33131 CG14614 gaggacgccgugaucAUGAAUc |||||| aagaaauaagcgaaaUACUUAc 2 8 812 833 [dm3:X:21854233-21854254:-] 0.5885 120 6 -6.56 -0.1762 MIMAT0005520 dme-miR-1000 33131 CG14614 ugacgacacuguccUGUUAUa |||||| aacacagcuagaauACAAUAc 2 8 885 905 [dm3:X:21854161-21854181:-] 0.5885 120 6 -6.18 -0.1680 MIMAT0005020 dme-miR-1007 33131 CG14614 acgUUUGUCAAU--UAACUCGAAu ||:|:| | | ||||||| uggAAGCGGAAAGCAGUGAGCUUa 2 20 131 154 [dm3:X:21854912-21854935:-] 0.5241 150 7 -18.52 -0.5535 MIMAT0005027 dme-miR-1014 33131 CG14614 gacgUUUACUUUUACUUAAaa | ||| ||||||||| cauaAUAUG-AAAUGAAUUaa 3 18 793 812 [dm3:X:21854254-21854273:-] 0.5885 143 0 -8.53 -0.2430

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score wap RAID00043552 dme-miR-9c-5p miRNA MIMAT0000392 wap mRNA 33131 Prediction 0.1828 wap RAID00106380 dme-miR-1014-3p miRNA MIMAT0005027 wap mRNA 33131 Prediction 0.2202 wap RAID00119635 dme-miR-1006-3p miRNA MIMAT0005019 wap mRNA 33131 Prediction 0.1828 wap RAID00197879 dme-miR-375-3p miRNA MIMAT0005472 wap mRNA 33131 Prediction 0.1828 wap RAID00272901 dme-miR-284-3p miRNA MIMAT0000348 wap mRNA 33131 Prediction 0.1828 wap RAID00481399 dme-miR-964-5p miRNA MIMAT0005478 wap mRNA 33131 Prediction 0.2202 wap RAID00505483 dme-miR-993-3p miRNA MIMAT0005512 wap mRNA 33131 Prediction 0.1828 wap RAID00621678 dme-miR-987-5p miRNA MIMAT0005504 wap mRNA 33131 Prediction 0.2202 wap RAID00691436 dme-bantam-3p miRNA MIMAT0000365 wap mRNA 33131 Prediction 0.1828 wap RAID00719134 dme-miR-283-5p miRNA MIMAT0000347 wap mRNA 33131 Prediction 0.1828 wap RAID00779268 dme-miR-316-5p miRNA MIMAT0000408 wap mRNA 33131 Prediction 0.1828 wap RAID01109293 dme-miR-1000-5p miRNA MIMAT0005520 wap mRNA 33131 Prediction 0.1828 wap RAID01200637 dme-miR-315-5p miRNA MIMAT0000407 wap mRNA 33131 Prediction 0.1828 wap RAID01350134 dme-miR-252-5p miRNA MIMAT0005516 wap mRNA 33131 Prediction 0.1828 wap RAID01360294 dme-miR-966-5p miRNA MIMAT0005481 wap mRNA 33131 Prediction 0.1828 wap RAID01620217 dme-miR-314-3p miRNA MIMAT0000406 wap mRNA 33131 Prediction 0.1828 wap RAID01852973 dme-miR-1007-3p miRNA MIMAT0005020 wap mRNA 33131 Prediction 0.2202 wap RAID02049790 dme-miR-9a-5p miRNA MIMAT0000114 wap mRNA 33131 Prediction 0.1828 wap RAID02161438 dme-miR-960-5p miRNA MIMAT0005474 wap mRNA 33131 Prediction 0.1828 wap RAID02293203 dme-miR-958-3p miRNA MIMAT0005471 wap mRNA 33131 Prediction 0.1828 wap RAID02572359 dme-let-7-5p miRNA MIMAT0000396 wap mRNA 33131 Prediction 0.2202 wap RAID02632816 dme-miR-9b-5p miRNA MIMAT0000395 wap mRNA 33131 Prediction 0.1828 wap RAID02702681 dme-miR-957-3p miRNA MIMAT0005470 wap mRNA 33131 Prediction 0.1828 wap RAID02767996 dme-miR-932-5p miRNA MIMAT0005479 wap mRNA 33131 Prediction 0.1828 wap RAID02776188 dme-miR-137-3p miRNA MIMAT0005507 wap mRNA 33131 Prediction 0.2202 wap RAID02863333 dme-miR-210-3p miRNA MIMAT0000355 wap mRNA 33131 Prediction 0.1828 wap RAID03363272 dme-mir-iab-4 miRNA MI0000432 wap mRNA 33131 Prediction 0.1828 wap RAID03684786 dme-miR-969-5p miRNA MIMAT0005485 wap mRNA 33131 Prediction 0.1828 wap RAID03758972 dme-miR-1002-5p miRNA MIMAT0005483 wap mRNA 33131 Prediction 0.1828