DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000360 dme-miR-287 37188 Topors cacguUUGCUAAAAGUUGUGu |::| | ||||||: auuuuAGUG-UACUCAACAUa 2 17 446 465 [dm3:2R:14864688-14864707:+] 0.6217 126 0 -10.60 -0.1159 MIMAT0000364 dme-miR-289 37188 Topors ucaGCGUCCGAGGUGAAU--UUAUAAAu | || | |||: | ||||||| aucCCCAAACCCCAUAAAAUAAUAUUUg 2 24 91 118 [dm3:2R:14864333-14864360:+] 0.5257 150 7 -8.73 -1.1073 MIMAT0005475 dme-miR-961 37188 Topors uagagUCAAUGACCACUAGUUu | ||| | ||||||| cguagAAUUAGCGCUGAUCAAu 2 18 372 393 [dm3:2R:14864614-14864635:+] 0.6217 153 7 -8.37 -0.5365 MIMAT0005488 dme-miR-972 37188 Topors cggauuUAUAAGCAUAACAUGu || ||: :|||||| auugccAU-UUUAAGUUGUACa 2 17 149 169 [dm3:2R:14864391-14864411:+] 0.5257 130 6 -10.06 -0.1888 MIMAT0005509 dme-miR-991 37188 Topors ugaaagguUUGAUGUUGAAAUu |||| ||||||| acaauggcAACU--AACUUUAc 2 15 335 354 [dm3:2R:14864577-14864596:+] 0.5257 147 7 -6.84 -0.7927 MIMAT0011784 dme-miR-2279* 37188 Topors uuaaaGUGUGUGUCUAUAAAUu ||:| | ||||||: aacccCAUAAAAUAAUAUUUGu 2 18 98 119 [dm3:2R:14864340-14864361:+] 0.5257 133 0 -6.07 -0.1273 MIMAT0011784 dme-miR-2279* 37188 Topors uuaaAGUGUGUGUCUAUAAAUu || || ||| |||||| cccaUCCCA-ACA-UUAUUUAa 2 19 184 203 [dm3:2R:14864426-14864445:+] 0.5257 122 6 -6.45 -0.1159 MIMAT0011791 dme-miR-2283 37188 Topors uaacagcauaagUACUAUAAAag || |||||| aaaccccauaaaAUAAUAUUUgu 3 12 97 119 [dm3:2R:14864339-14864361:+] 0.5257 127 0 -0.58 -0.1299 MIMAT0012196 dme-miR-2489 37188 Topors ugaCGUUUAUGUUGUAUGUUAu |:: | ||||||||||| uuaGUGUACUCAACAUACAAUg 2 20 449 470 [dm3:2R:14864691-14864712:+] 0.6217 163 7 -17.72 -0.8341 MIMAT0012211 dme-miR-2498 37188 Topors uucAUUCUGCCCUUA-CGGUCAAa |||| :||| :| ||||||| gcaUAAG-UGGGCGUGGCCAGUUa 2 21 420 442 [dm3:2R:14864662-14864684:+] 0.6217 161 7 -20.35 -0.9746 MIMAT0000338 dme-miR-277 37188 Topors acAGCAU--GGUCUAUCAC-GUAAAu |:||| || | | || ||||| uaUUGUAGGCCUAAGAUUGCCAUUUu 2 22 134 159 [dm3:2R:14864376-14864401:+] 0.5257 120 0 -9.46 -0.9723 MIMAT0000347 dme-miR-283 37188 Topors ucUUAAUGGUCGACUAUAAAu ||| | || ||||| | acAAUGAACAAAAGAUAUCUg 2 20 465 485 [dm3:2R:14864707-14864727:+] 0.6217 123 0 -3.40 -0.1130 MIMAT0000347 dme-miR-283 37188 Topors ucuuaauggucgacUAUAAAu |||||| aaccccauaaaauaAUAUUUg 2 8 98 118 [dm3:2R:14864340-14864360:+] 0.5257 120 6 -4.15 -0.1608 MIMAT0000352 dme-miR-79 37188 Topors uacGAAACCAUUAG-AUCGAAAu |||| | ||| ||||||| uaaCUUUACU-AUCGUAGCUUUu 2 20 346 367 [dm3:2R:14864588-14864609:+] 0.5257 156 7 -12.31 -0.7976 MIMAT0000392 dme-miR-9c 37188 Topors agauGUCG-AUCUUA--UGGUUUCu || | || ||| || |||| uacuCAACAUACAAUGAACAAAAGa 2 19 455 479 [dm3:2R:14864697-14864721:+] 0.6217 120 0 -7.39 -0.1026 MIMAT0000395 dme-miR-9b 37188 Topors guauGUCG-AUUUUA-GUGGUUUCu || | || ||| || |||| uacuCAACAUACAAUGAACAAAAGa 2 20 455 479 [dm3:2R:14864697-14864721:+] 0.6217 121 0 -9.96 -0.1016 MIMAT0000407 dme-miR-315 37188 Topors cgAAAGAC-UCGUUGUUAGUUUu | |||| | :| ||||||| gaUAUCUGUAAUACGAAUCAAAu 2 21 478 500 [dm3:2R:14864720-14864742:+] 0.6217 155 7 -11.30 -1.0408 MIMAT0000408 dme-miR-316 37188 Topors gcggucauucgccuUUUUCUGu ||||||| cccccuuccacaucAAAAGACg 2 9 234 255 [dm3:2R:14864476-14864497:+] 0.5257 140 7 -12.35 -0.3728 MIMAT0000408 dme-miR-316 37188 Topors gcgGUCAU-UCGCCU-UUUUCUGu || || | :| | ||||||: caaCA-UACAAUGAACAAAAGAUa 2 20 459 481 [dm3:2R:14864701-14864723:+] 0.6217 127 0 -10.42 -0.1511 MIMAT0005468 dme-miR-193 37188 Topors caacccugaauCAUCCGGUCAu || ||||||| cauaagugggcGU-GGCCAGUu 2 12 421 441 [dm3:2R:14864663-14864683:+] 0.6217 141 7 -19.15 -0.9828 MIMAT0005472 dme-miR-375 37188 Topors auUGAAUUCGGU-UUGCUUGUUu ||| || :| ||:|||||| guACUCAACAUACAAUGAACAAa 2 21 454 476 [dm3:2R:14864696-14864718:+] 0.6217 147 6 -11.78 -0.3389 MIMAT0005484 dme-miR-968 37188 Topors guugggaaaUUACCUAUGA-UGAAu ||||| ||| |||| acuauaaacAAUGGCAACUAACUUu 2 16 328 352 [dm3:2R:14864570-14864594:+] 0.5257 123 0 -9.61 -0.9305 MIMAT0005487 dme-miR-971 37188 Topors agugacauucuucaUUGUGGuu |||||| uacauacauauauaAACACCca 3 9 166 187 [dm3:2R:14864408-14864429:+] 0.5257 120 0 -7.02 -0.1495 MIMAT0005493 dme-miR-977 37188 Topors aaucUGUUGCACUUAUAGAgu |||| :|||||| augaACAA--AAGAUAUCUgu 3 18 468 486 [dm3:2R:14864710-14864728:+] 0.6217 122 0 -6.91 -0.1429 MIMAT0005027 dme-miR-1014 37188 Topors gacguuuacuuuUACUUAAAa |||||||| gcguggccaguuAUGAAUUUu 2 10 430 450 [dm3:2R:14864672-14864692:+] 0.6217 145 7 -8.66 -0.9389

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Topors RAID00016208 dme-miR-315-5p miRNA MIMAT0000407 Topors mRNA 37188 Prediction 0.2202 Topors RAID00134674 dme-miR-193-3p miRNA MIMAT0005468 Topors mRNA 37188 Prediction 0.2202 Topors RAID00170664 dme-miR-971-3p miRNA MIMAT0005487 Topors mRNA 37188 Prediction 0.1828 Topors RAID00290631 dme-miR-316-5p miRNA MIMAT0000408 Topors mRNA 37188 Prediction 0.2202 Topors RAID00446300 dme-miR-972-3p miRNA MIMAT0005488 Topors mRNA 37188 Prediction 0.1828 Topors RAID00516296 dme-miR-9c-5p miRNA MIMAT0000392 Topors mRNA 37188 Prediction 0.1828 Topors RAID00625545 dme-miR-968-5p miRNA MIMAT0005484 Topors mRNA 37188 Prediction 0.1828 Topors RAID00714287 dme-bantam-3p miRNA MIMAT0000365 Topors mRNA 37188 Prediction 0.1828 Topors RAID00737966 dme-miR-1-3p miRNA MIMAT0000105 Topors mRNA 37188 Prediction 0.1828 Topors RAID01038673 dme-miR-375-3p miRNA MIMAT0005472 Topors mRNA 37188 Prediction 0.2202 Topors RAID01359740 dme-miR-977-3p miRNA MIMAT0005493 Topors mRNA 37188 Prediction 0.1828 Topors RAID01735489 dme-miR-283-5p miRNA MIMAT0000347 Topors mRNA 37188 Prediction 0.1828 Topors RAID02084290 dme-miR-9b-5p miRNA MIMAT0000395 Topors mRNA 37188 Prediction 0.1828 Topors RAID02303837 dme-miR-961-5p miRNA MIMAT0005475 Topors mRNA 37188 Prediction 0.1828 Topors RAID02469720 dme-miR-1013-3p miRNA MIMAT0005026 Topors mRNA 37188 Prediction 0.1828 Topors RAID02742572 dme-miR-1014-3p miRNA MIMAT0005027 Topors mRNA 37188 Prediction 0.2202 Topors RAID02879280 dme-miR-991-3p miRNA MIMAT0005509 Topors mRNA 37188 Prediction 0.1828 Topors RAID03599067 dme-miR-277-3p miRNA MIMAT0000338 Topors mRNA 37188 Prediction 0.1828 Topors RAID03750220 dme-miR-79-3p miRNA MIMAT0000352 Topors mRNA 37188 Prediction 0.2202 Topors RAID04024467 dme-mir-iab-4 miRNA MI0000432 Topors mRNA 37188 Prediction 0.1828