PPI - iRefIndex UniProt A UniProt B Method PMID Interaction Type Edge type Num Participants Q9P3A7 Q9UTR8 affinity chromatography technology 24713849 physical association X 2 Q9P3A7 O74823 affinity chromatography technology 24713849 physical association X 2 Q9P3A7 O94289 affinity chromatography technology 14993272 physical association X 2 P87061 Q9P3A7 affinity chromatography technology 21652630 physical association X 2 Q9UTK7 Q9P3A7 affinity chromatography technology 22086920 physical association X 2 O14048 Q9P3A7 affinity chromatography technology 15120077 physical association X 2 P40235 Q9P3A7 affinity chromatography technology 24055157 physical association X 2 Q9P3A7 O74954 affinity chromatography technology 22540037 physical association X 2 Q9P3A7 O94326 affinity chromatography technology 24713849 physical association X 2 Q9P3A7 O74309 affinity chromatography technology 20976105 physical association X 2 Q9P3A7 O74498 pull down 22086920 direct interaction X 2 Q9P7I7 Q9P3A7 affinity chromatography technology 25002536 physical association X 2 P78963 Q9P3A7 affinity chromatography technology 25009287 physical association X 2 P87176 Q9P3A7 affinity chromatography technology 24265825 physical association X 2 O13974 Q9P3A7 affinity chromatography technology 20838651 physical association X 2 O13799 Q9P3A7 affinity chromatography technology 24713849 physical association X 2 Q9UT81 Q9P3A7 affinity chromatography technology 15120077 physical association X 2 P40236 Q9P3A7 affinity chromatography technology 24055157 physical association X 2 Q9P3A7 pull down 20016281 direct interaction X 2 O14048 Q9P3A7 pull down 15120077 physical association X 2 O94298 Q9P3A7 anti tag coimmunoprecipitation 14993272 physical association X 2 Q9UT81 Q9P3A7 pull down 15120077 physical association X 2

PPI - HINT Gene A Gene B PMID Method Quality DSK1 CDC48 26167880 0415 LC O13799 CDC48 24713849 0004 HT OTU1 CDC48 20838651 0004 LC UBX2 CDC48 15120077,15120077 0004,0096 LC SLM9 CDC48 20976105 0004 LC UCP10 CDC48 22086920 0096 LC O74823 CDC48 24713849 0004 HT CBF11 CDC48 22540037 0004 LC LUB1 CDC48 14993272 0004 LC SUR2 CDC48 14993272 0007 LC O94326 CDC48 24713849 0004 HT SKB1 CDC48 25009287 0004 LC TEA1 CDC48 21652630 0004 LC SLX8 CDC48 24265825 0004 LC HSP3106 CDC48 26152728 0004 LC CDC48 Q9P7I7 25002536 0004 LC CDC48 UBX3 15120077,15120077 0004,0096 LC CDC48 DSC2 22086920 0004 LC CDC48 RED1 24713849 0004 HT CDC48 UPI0000162091 20016281 0096 LC

PPI - Mentha Protein A Protein B Gene A Gene B Score PMID Q9P3A7 Q10356 CDC48 Q10356 0.126 26152728 Q9P3A7 O74309 CDC48 SLM9 0.21 20976105 Q9P3A7 O74498 CDC48 UCP10 0.309 22086920 Q9P3A7 O74823 CDC48 O74823 0.126 24713849 Q9P3A7 O74954 CDC48 CBF11 0.126 22540037 Q9P3A7 O94289 CDC48 LUB1 0.21 14993272 Q9P3A7 O94326 CDC48 O94326 0.126 24713849 Q9P3A7 P36616 CDC48 DSK1 0.183 26167880 Q9P3A7 P87176 CDC48 SLX8 0.21 24265825 Q9P7I7 Q9P3A7 Q9P7I7 CDC48 0.126 25002536 Q9UT81 Q9P3A7 UBX3 CDC48 0.21 15120077 Q9UTK7 Q9P3A7 DSC2 CDC48 0.21 22086920 Q9UTR8 Q9P3A7 RED1 CDC48 0.126 24713849 Q9P3A7 P78963 CDC48 SKB1 0.21 25009287 Q9P3A7 P87061 CDC48 TEA1 0.126 21652630 Q9P3A7 O13799 CDC48 O13799 0.126 24713849 Q9P3A7 O13974 CDC48 OTU1 0.126 20838651 Q9P3A7 O14048 CDC48 UBX2 0.21 15120077