PPI - iRefIndex UniProt A UniProt B Method PMID Interaction Type Edge type Num Participants O94444 Q92353 affinity chromatography technology 15533439 physical association X 2 P41836 Q92353 affinity chromatography technology 20838651 physical association X 2 O74762 Q92353 affinity chromatography technology 20838651 physical association X 2 O42931 Q92353 affinity chromatography technology 20838651 physical association X 2 Q92353 O74894 affinity chromatography technology 20838651 physical association X 2 Q92353 O42897 affinity chromatography technology 20838651 physical association X 2 Q92353 Q9P7S2 affinity chromatography technology 20838651 physical association X 2 O74445 Q92353 affinity chromatography technology 20838651 physical association X 2 P36612 Q92353 affinity chromatography technology 20838651 physical association X 2 O14126 Q92353 affinity chromatography technology 20838651 physical association X 2 Q9UT97 Q92353 affinity chromatography technology 20838651 physical association X 2 Q92353 P87048 pull down 15533439 direct interaction X 2 Q92353 P87048 affinity chromatography technology 20838651 physical association X 2 Q92353 Q9UTM3 affinity chromatography technology 20838651 physical association X 2 Q92353 O94517 affinity chromatography technology 20838651 physical association X 2 Q92353 O14250 affinity chromatography technology 20838651 physical association X 2 P40235 Q92353 affinity chromatography technology 24055157 physical association X 2 P40236 Q92353 affinity chromatography technology 24055157 physical association X 2 O43063 Q92353 affinity chromatography technology 20838651 physical association X 2

PPI - HINT Gene A Gene B PMID Method Quality TBP1 UBP6 20838651 0004 LC O14250 UBP6 20838651 0004 LC RPN3 UBP6 20838651 0004 LC RPT1 UBP6 20838651 0004 LC PRE3 UBP6 20838651 0004 LC RPT4 UBP6 20838651 0004 LC RPN2 UBP6 20838651 0004 LC RPT3 UBP6 20838651 0004 LC RPN10 UBP6 15533439 0004 LC O94517 UBP6 20838651 0004 LC MTS2 UBP6 20838651,22144913 0004,0004 LC LET1 UBP6 20838651 0004 LC RPN1 UBP6 15533439,20838651 0096,0004 LC UBP6 RPN6 20838651 0004 LC UBP6 PUP2 20838651 0004 LC UBP6 RPN501|RPN502 20838651 0004 LC

PPI - Mentha Protein A Protein B Gene A Gene B Score PMID Q92353 O94444 UBP6 RPN10 0.21 15533439 Q92353 P87048 UBP6 RPN1 0.396 20838651,15533439 Q92353 O42897 UBP6 RPN3 0.126 20838651 Q92353 O14250 UBP6 O14250 0.126 20838651 Q92353 O14126 UBP6 TBP1 0.126 20838651 Q92353 P0CU18 UBP6 RPN502 0.126 20838651 Q92353 O74762 UBP6 RPN2 0.126 20838651 Q92353 O74445 UBP6 RPT4 0.126 20838651 Q92353 O42931 UBP6 RPT1 0.126 20838651 Q92353 O43063 UBP6 PRE3 0.126 20838651 Q92353 O74894 UBP6 RPT3 0.126 20838651 Q92353 P0CU17 UBP6 RPN501 0.126 20838651 Q92353 O94517 UBP6 O94517 0.126 20838651 Q9UT97 Q92353 PUP2 UBP6 0.126 20838651 Q9P7S2 Q92353 RPN6 UBP6 0.126 20838651 Q92353 P36612 UBP6 MTS2 0.309 20838651,22144913 Q92353 P41836 UBP6 LET1 0.126 20838651