PPI - iRefIndex UniProt A UniProt B Method PMID Interaction Type Edge type Num Participants P36612 Q9UUB6 affinity chromatography technology 20838651 physical association X 2 O94444 Q9UUB6 affinity chromatography technology 15533439 physical association X 2 O94444 Q9UUB6 pull down 15533439 direct interaction X 2 O94444 Q9UUB6 affinity chromatography technology 20838651 physical association X 2 O74762 Q9UUB6 affinity chromatography technology 20838651 physical association X 2 O14126 Q9UUB6 affinity chromatography technology 20838651 physical association X 2 O42931 Q9UUB6 affinity chromatography technology 20838651 physical association X 2 Q10311 Q9UUB6 affinity chromatography technology 20838651 physical association X 2 Q9Y7T8 Q9UUB6 affinity chromatography technology 20838651 physical association X 2 Q9UT97 Q9UUB6 affinity chromatography technology 20838651 physical association X 2 Q9UUB6 O74954 affinity chromatography technology 22540037 physical association X 2 Q9UUB6 O14399 pull down 23496905 direct interaction X 2 Q9UUB6 P41878 pull down 15533439 direct interaction X 2 Q9UUB6 O74894 affinity chromatography technology 20838651 physical association X 2 Q9UUB6 Q9UTM3 affinity chromatography technology 20838651 physical association X 2 Q9UUB6 Q9P7S2 affinity chromatography technology 20838651 physical association X 2 Q9UUB6 O14250 affinity chromatography technology 20838651 physical association X 2 Q9UUB6 O74440 affinity chromatography technology 20838651 physical association X 2 Q9UUB6 Q9US13 affinity chromatography technology 20838651 physical association X 2 Q9UUB6 P30655 affinity chromatography technology 20838651 physical association X 2 Q9UUB6 P41878 affinity chromatography technology 20838651 physical association X 2 Q9UUB6 Q9USQ9 affinity chromatography technology 20838651 physical association X 2 Q9UUB6 Q10329 affinity chromatography technology 20838651 physical association X 2 Q9UUB6 O59770 affinity chromatography technology 20838651 physical association X 2 Q9UUB6 P41878 affinity chromatography technology 20838651 physical association X 2 Q09841 Q9UUB6 affinity chromatography technology 20838651 physical association X 2 Q09720 Q9UUB6 affinity chromatography technology 20838651 physical association X 2 O43063 Q9UUB6 affinity chromatography technology 20838651 physical association X 2 Q9UQY2 Q9UUB6 affinity chromatography technology 20838651 physical association X 2 Q10335 Q9UUB6 affinity chromatography technology 20838651 physical association X 2 P41836 Q9UUB6 affinity chromatography technology 20838651 physical association X 2 Q09682 Q9UUB6 affinity chromatography technology 20838651 physical association X 2 Q9UUB6 P87048 affinity chromatography technology 10872838 physical association X 2 Q9UUB6 O14140 affinity chromatography technology 16149916 physical association X 2 Q9UUB6 P87048 affinity chromatography technology 20838651 physical association X 2 Q9UUB6 Q9Y7Y6 affinity chromatography technology 20838651 physical association X 2 Q9UUB6 O42897 affinity chromatography technology 20838651 physical association X 2 Q9UUB6 O94517 affinity chromatography technology 20838651 physical association X 2 Q9UUB6 O94579 affinity chromatography technology 20838651 physical association X 2 P50524 Q9UUB6 affinity chromatography technology 20838651 physical association X 2 O74445 Q9UUB6 affinity chromatography technology 20838651 physical association X 2 Q9P7H8 Q9UUB6 affinity chromatography technology 20838651 physical association X 2 Q9UUB6 tandem affinity purification 16149916 association C 7

PPI - HINT Gene A Gene B PMID Method Quality UCH2 UCH2 26771498 0018 HT TBP1 UCH2 20838651 0004 LC DSS1 UCH2 16149916,16149916 0676,0004 LC O14250 UCH2 20838651 0004 LC UBL1 UCH2 23496905 0096 LC RPN3 UCH2 20838651 0004 LC RPT1 UCH2 20838651 0004 LC PRE3 UCH2 20838651 0004 LC PRE10 UCH2 20838651 0004 LC RPN8 UCH2 20838651 0004 LC RPT4 UCH2 20838651 0004 LC RPN2 UCH2 20838651 0004 LC RPT3 UCH2 20838651 0004 LC CBF11 UCH2 22540037 0004 LC RPN10 UCH2 15533439,20838651,15533439 0096,0004,0004 LC O94517 UCH2 20838651 0004 LC PRE8 UCH2 20838651 0004 LC PTS1 UCH2 20838651 0004 LC MTS2 UCH2 20838651 0004 LC LET1 UCH2 20838651 0004 LC RPN11 UCH2 15533439,20838651 0096,0004 LC RPN12 UCH2 20838651 0004 LC RPN1 UCH2 10872838,20838651 0004,0004 LC Q09682 UCH2 20838651 0004 LC Q09720 UCH2 20838651 0004 LC PUP1 UCH2 20838651 0004 LC Q10311 UCH2 20838651 0004 LC PRE6 UCH2 20838651 0004 LC RPN7 UCH2 20838651 0004 LC ECM29 UCH2 20838651 0004 LC RPN6 UCH2 20838651 0004 LC PAM1 UCH2 20838651 0004 LC RPN9 UCH2 20838651 0004 LC Q9USQ9 UCH2 20838651 0004 LC PUP2 UCH2 20838651 0004 LC RPN501|RPN502 UCH2 20838651 0004 LC UCH2 PUP3 20838651 0004 LC UCH2 Q9Y7Y6 20838651 0004 LC

PPI - Mentha Protein A Protein B Gene A Gene B Score PMID Q9UUB6 O74954 UCH2 CBF11 0.126 22540037 Q9UUB6 O94444 UCH2 RPN10 0.523 20838651,15533439 Q9UUB6 P87048 UCH2 RPN1 0.309 20838651,10872838 Q9UUB6 O14126 UCH2 TBP1 0.126 20838651 Q9UUB6 O14250 UCH2 O14250 0.126 20838651 Q9UUB6 O14399 UCH2 UBL1 0.309 23496905 Q9UUB6 O42897 UCH2 RPN3 0.126 20838651 Q9UUB6 O42931 UCH2 RPT1 0.126 20838651 Q9UUB6 O43063 UCH2 PRE3 0.126 20838651 Q9UUB6 O59770 UCH2 PRE10 0.126 20838651 Q9UUB6 O74440 UCH2 RPN8 0.126 20838651 Q9UUB6 O74445 UCH2 RPT4 0.126 20838651 Q9UUB6 O74762 UCH2 RPN2 0.126 20838651 Q9UUB6 O74894 UCH2 RPT3 0.126 20838651 Q9UUB6 O94517 UCH2 O94517 0.126 20838651 Q9UUB6 O94579 UCH2 PRE8 0.126 20838651 Q9UUB6 P0CU17 UCH2 RPN501 0.126 20838651 Q9UUB6 P0CU18 UCH2 RPN502 0.126 20838651 Q9UUB6 P30655 UCH2 PTS1 0.126 20838651 Q9UUB6 P36612 UCH2 MTS2 0.126 20838651 Q9UUB6 P41836 UCH2 LET1 0.126 20838651 Q9UUB6 P41878 UCH2 RPN11 0.472 20838651,15533439 Q9UUB6 P50524 UCH2 RPN12 0.126 20838651 Q9UUB6 Q09682 UCH2 Q09682 0.126 20838651 Q9UUB6 Q09720 UCH2 Q09720 0.126 20838651 Q9UUB6 Q09841 UCH2 PUP1 0.126 20838651 Q9UUB6 Q10311 UCH2 Q10311 0.126 20838651 Q9UUB6 Q10329 UCH2 PRE6 0.126 20838651 Q9UUB6 Q10335 UCH2 RPN7 0.126 20838651 Q9UUB6 Q9P7H8 UCH2 ECM29 0.126 20838651 Q9UUB6 Q9P7S2 UCH2 RPN6 0.126 20838651 Q9UUB6 Q9UQY2 UCH2 PAM1 0.126 20838651 Q9UUB6 Q9US13 UCH2 RPN9 0.126 20838651 Q9UUB6 Q9USQ9 UCH2 Q9USQ9 0.126 20838651 Q9UUB6 Q9UT97 UCH2 PUP2 0.126 20838651 Q9UUB6 Q9UUB6 UCH2 UCH2 0.21 26771498 Q9Y7T8 Q9UUB6 PUP3 UCH2 0.126 20838651 Q9Y7Y6 Q9UUB6 Q9Y7Y6 UCH2 0.126 20838651 Q9UUB6 O14140 UCH2 DSS1 0.21 16149916