DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0015091 cel-let-7* 179898 aip-1 cauuccaucuuuuaacguAUCAAGu |||||| uucucuucaaccuuguucUAGUUCa 2 8 56 80 [ce6:V:14013474-14013498:+] 0.5039 120 6 -9.04 -0.1866 MIMAT0015119 cel-miR-247* 179898 aip-1 ccaUUAAUCUUUGAAAAGAGAu |||| | | ||||||| uacAAUUUG---CAUUUCUCUu 2 20 44 62 [ce6:V:14013462-14013480:+] 0.5039 147 7 -7.92 -0.8726 MIMAT0000313 cel-miR-258 179898 aip-1 uuuuccUAAGGAGAGUUUUGg || | | ||||||| guucauAUCCGUGUCAAAACu 2 16 76 96 [ce6:V:14013494-14013514:+] 0.5420 151 7 -12.04 -0.9153 MIMAT0000324 cel-miR-268 179898 aip-1 uggUUUGACGAAG-AUUAAGAACgg | ||| :||| | |||||| ugaAUACUUUUUCUUUUUUCUUGau 3 22 157 181 [ce6:V:14013575-14013599:+] 0.5120 140 0 -14.19 -0.1732 MIMAT0015240 cel-miR-788* 179898 aip-1 gcUAAGAUUAGGUAAAGg | |:| ||:|||||| aaACUUUUAUUCAUUUCa 2 17 92 109 [ce6:V:14013510-14013527:+] 0.5420 144 6 -11.07 -0.1614 MIMAT0014446 cel-miR-2953-5p 179898 aip-1 uaaAAGUGCUUGUGAAGACAu ||| | |: :|||||| cccUUCUCAUAU-UUUCUGUa 2 19 26 45 [ce6:V:14013444-14013463:+] 0.4659 132 6 -10.10 -0.1383 MIMAT0000015 cel-miR-44 179898 aip-1 ucGACUUACACAGAGAUCAGu :| || | :||||||: ucUUCAACCUUGUUCUAGUUc 2 20 59 79 [ce6:V:14013477-14013497:+] 0.5420 131 0 -8.64 -0.1044 MIMAT0000016 cel-miR-45 179898 aip-1 ucGACUUACACAGAGAUCAGu :| || | :||||||: ucUUCAACCUUGUUCUAGUUc 2 20 59 79 [ce6:V:14013477-14013497:+] 0.5420 131 0 -8.64 -0.1044 MIMAT0000033 cel-miR-61 179898 aip-1 cuacucauugcCAAGAUCAGu ||||||||: ucuucaaccuuGUUCUAGUUc 2 11 59 79 [ce6:V:14013477-14013497:+] 0.5420 134 0 -10.91 -0.1065 MIMAT0000035 cel-miR-63 179898 aip-1 aaAGGUUGAGCGAAGUCACAGUau ||:|::|| : || |||||| guUCUAGUUCAUAUCCGUGUCAaa 3 23 70 93 [ce6:V:14013488-14013511:+] 0.5420 150 0 -17.65 -0.1100 MIMAT0000036 cel-miR-64 179898 aip-1 aagccAUUGCG-A-AGUCACAGUau ||:: | | || |||||| uguucUAGUUCAUAUCCGUGUCAaa 3 19 69 93 [ce6:V:14013487-14013511:+] 0.5420 128 0 -9.40 -0.1111 MIMAT0000037 cel-miR-65 179898 aip-1 aagcCAAUGCGAAGUCACAGUau ||| | : || |||||| ucuaGUU-CAUAUCCGUGUCAaa 3 20 72 93 [ce6:V:14013490-14013511:+] 0.5420 133 0 -9.40 -0.1111 MIMAT0000038 cel-miR-66 179898 aip-1 agugUAGGGAUUAGUCACAGUac :|:| | ||| |||||| ucuaGUUCAU-AUCCGUGUCAaa 3 20 72 93 [ce6:V:14013490-14013511:+] 0.5420 137 0 -15.53 -0.1078 MIMAT0000058 cel-miR-85 179898 aip-1 cgUGCUGAAAAGUUUAUGAAACAu || | | : :|| |||||| cuACUAAAAUAUUGAUUCUUUGUa 2 23 127 150 [ce6:V:14013545-14013568:+] 0.5329 122 6 -9.45 -0.1465 MIMAT0000287 cel-miR-232 179898 aip-1 aguGGCGUCAAUUCUACGUAAAu |:|:| || ||||||| uuuCUGUA--CAAUUUGCAUUUc 2 21 38 58 [ce6:V:14013456-14013476:+] 0.5039 145 7 -9.63 -0.9861 MIMAT0000293 cel-miR-238 179898 aip-1 agacuuaccguagccuCAUGUUu |||||| aaaauauugauucuuuGUACAAu 2 8 132 154 [ce6:V:14013550-14013572:+] 0.5239 120 6 -7.39 -0.1006 MIMAT0000294 cel-miR-239a 179898 aip-1 ggUCAUGGAUACACAUCAUGUUu | ||:: || | |||||| aaAAUAUUGAUUCUUUGUACAAu 2 22 132 154 [ce6:V:14013550-14013572:+] 0.5239 125 6 -5.97 -0.1006 MIMAT0000303 cel-miR-247 179898 aip-1 ucuucucuuaucCGAGAUCAGu |:||||||: cucuucaaccuuGUUCUAGUUc 2 11 58 79 [ce6:V:14013476-14013497:+] 0.5420 130 0 -10.35 -0.1055 MIMAT0004215 cel-miR-253 179898 aip-1 ggaagGGUGUUGCGGAUGAUu |: ||:: ||||||| gccaaCUUCAGU-CCUACUAa 2 17 114 133 [ce6:V:14013532-14013551:+] 0.5329 146 7 -18.52 -1.2556 MIMAT0000310 cel-miR-254 179898 aip-1 ggaugucagcgcuuucUAAACGu |||||| ucauauuuucuguacaAUUUGCa 2 8 32 54 [ce6:V:14013450-14013472:+] 0.4659 120 6 -8.62 -0.1330 MIMAT0004220 cel-miR-785 179898 aip-1 agauguguuuuGUUAAGUGAAu || ||||||| aaacuuuuauuCAUUUCACUUc 2 12 92 113 [ce6:V:14013510-14013531:+] 0.5420 147 7 -9.26 -0.9170 MIMAT0004227 cel-miR-792 179898 aip-1 agacUUUCAACUUCUCUAAAGUu ||| || | |||||| gucaAAACUUUUAUUCAUUUCAc 2 20 88 110 [ce6:V:14013506-14013528:+] 0.5420 123 6 -2.57 -0.1143

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score aip-1 RAID00149853 cel-miR-64-5p miRNA MIMAT0000036 aip-1 mRNA 179898 Prediction 0.1828 aip-1 RAID00337264 cel-miR-254-3p miRNA MIMAT0000310 aip-1 mRNA 179898 Prediction 0.1828 aip-1 RAID00413903 cel-miR-792-3p miRNA MIMAT0004227 aip-1 mRNA 179898 Prediction 0.1828 aip-1 RAID00563800 cel-miR-239a-5p miRNA MIMAT0000294 aip-1 mRNA 179898 Prediction 0.1828 aip-1 RAID00598807 cel-miR-63-3p miRNA MIMAT0000035 aip-1 mRNA 179898 Prediction 0.1828 aip-1 RAID00765467 cel-miR-85-3p miRNA MIMAT0000058 aip-1 mRNA 179898 Prediction 0.1828 aip-1 RAID01071971 cel-miR-45-3p miRNA MIMAT0000016 aip-1 mRNA 179898 Prediction 0.1828 aip-1 RAID01652618 cel-mir-253 miRNA MI0000329 aip-1 mRNA 179898 Prediction 0.1828 aip-1 RAID01920798 cel-miR-44-3p miRNA MIMAT0000015 aip-1 mRNA 179898 Prediction 0.1828 aip-1 RAID02048144 cel-miR-785-3p miRNA MIMAT0004220 aip-1 mRNA 179898 Prediction 0.1828 aip-1 RAID02267870 cel-miR-61-3p miRNA MIMAT0000033 aip-1 mRNA 179898 Prediction 0.1828 aip-1 RAID02501924 cel-miR-66-5p miRNA MIMAT0000038 aip-1 mRNA 179898 Prediction 0.1828 aip-1 RAID02671327 cel-miR-232-3p miRNA MIMAT0000287 aip-1 mRNA 179898 Prediction 0.1828 aip-1 RAID02901270 cel-mir-2953 miRNA MI0013633 aip-1 mRNA 179898 Prediction 0.1828 aip-1 RAID03349939 cel-miR-65-5p miRNA MIMAT0000037 aip-1 mRNA 179898 Prediction 0.1828 aip-1 RAID03577578 cel-miR-253-3p miRNA MIMAT0004215 aip-1 mRNA 179898 Prediction 0.1828 aip-1 RAID03686359 cel-miR-247-3p miRNA MIMAT0000303 aip-1 mRNA 179898 Prediction 0.1828 aip-1 RAID04029405 cel-miR-238-3p miRNA MIMAT0000293 aip-1 mRNA 179898 Prediction 0.1828