DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0015109 cel-miR-81* 179601 ape-1 agAGUCUAGUGCCACUU-UUGGc ||| ||| ||||| |||| ucUCAAAUCUGUGUGAAGAACCc 2 21 164 186 [ce6:V:11684996-11685018:+] 0.5299 132 0 -19.03 -0.6033 MIMAT0015112 cel-miR-229* 179601 ape-1 gauacUGUGGGC-----UAUGGAAAGa || |||| :|:|||||| guuccACCCCCGUUUUAGUGCCUUUCa 2 18 243 269 [ce6:V:11685075-11685101:+] 0.5299 132 6 -17.69 -0.1107 MIMAT0015115 cel-miR-239b* 179601 ape-1 aaAAACGUGUGGUGUUUUCACg ||| |:| :|:|||| || cuUUUAAAUA-UAUAAAAUUGa 2 21 389 409 [ce6:V:11685221-11685241:+] 0.5299 126 0 -6.18 -0.1432 MIMAT0000322 cel-miR-266 179601 ape-1 cgaaacgguuucAGAACGGa ||||||| aguaucaucuucUCUUGCCa 2 9 139 158 [ce6:V:11684971-11684990:+] 0.5299 140 7 -10.95 -1.0953 MIMAT0000324 cel-miR-268 179601 ape-1 ugguuugacgaagauuaAGAACGg |||||| cuaguaguaucaucuucUCUUGCc 2 8 134 157 [ce6:V:11684966-11684989:+] 0.5299 120 6 -14.73 -0.1256 MIMAT0000325 cel-miR-269 179601 ape-1 ucaaaacggucucAGAACGg |||||| uaguaucaucuucUCUUGCc 2 8 138 157 [ce6:V:11684970-11684989:+] 0.5299 120 6 -11.82 -0.1269 MIMAT0015240 cel-miR-788* 179601 ape-1 gcuAAGAUUA-GGUAAAGg |||| | ||||||| aucUUCUCUUGCCAUUUCa 2 16 145 163 [ce6:V:11684977-11684995:+] 0.5299 150 7 -11.83 -1.0102 MIMAT0004229 cel-miR-794 179601 ape-1 ucACUGUUGCUACU---AAUGGAGu |||| | | | ||||||| aaUGACCCCAUUCACUCUUACCUCu 2 21 48 72 [ce6:V:11684880-11684904:+] 0.5299 143 7 -10.78 -0.7698 MIMAT0005033 cel-miR-1020 179601 ape-1 gacuuucACAGUGUCUUAUUa | || | |||||| uauuauuUUUCCCUGAAUAAc 2 15 369 389 [ce6:V:11685201-11685221:+] 0.5299 122 6 -4.10 -0.1585 MIMAT0006587 cel-miR-1820 179601 ape-1 cuUGUAGUAGCUUUUUGUUAGUUuu |:|| || || : |||||| aaAUAU-AUAAAAUUGAAAUCAAcu 3 24 394 417 [ce6:V:11685226-11685249:+] 0.5299 133 0 -7.33 -0.1509 MIMAT0011436 cel-miR-2210* 179601 ape-1 cacccaucuCGUUAGCUGAAAu | |||| ||||| uauaaaauuGAAAUCAACUUU- 2 14 399 419 [ce6:V:11685231-11685251:+] 0.5299 125 0 -4.99 -0.1669 MIMAT0011454 cel-miR-2209b 179601 ape-1 acuucguguuggcGAGUAGAGa :||||||| cuucucuugccauUUCAUCUCa 2 10 147 168 [ce6:V:11684979-11685000:+] 0.5299 141 7 -12.20 -1.2103 MIMAT0011460 cel-miR-2219 179601 ape-1 gaAGUCGAAAGGGAGC-GUGAAGc ||| | ||:|:| |||||| cuUCAUCCAACCUUUGACACUUCu 2 22 189 212 [ce6:V:11685021-11685044:+] 0.5299 129 6 -19.62 -0.5689 MIMAT0011462 cel-miR-2220 179601 ape-1 gacAUUCAGGUGUUUGUUAACu ||| | |:| | ||||| uuuUAAAU--AUAUAAAAUUGa 2 20 390 409 [ce6:V:11685222-11685241:+] 0.5299 120 0 -6.87 -0.1997 MIMAT0011463 cel-miR-2221 179601 ape-1 ugaucGCCAGA--CCAUAG-UGAAc | |||| ||||| |||| acucaCCGUCUUAUGUAUCUACUUu 2 18 333 357 [ce6:V:11685165-11685189:+] 0.5299 120 0 -12.26 -1.2496 MIMAT0014446 cel-miR-2953-5p 179601 ape-1 uaaaagugcUUGUGAAGACAu :|||||||||| ccaaccuuuGACACUUCUGUc 2 13 195 215 [ce6:V:11685027-11685047:+] 0.5299 156 7 -15.41 -0.7781 MIMAT0000043 cel-miR-71 179601 ape-1 agUGAUGGGUACAGAAAGu || ||:: |||||||| ugAC-ACUUCUGUCUUUCg 2 18 203 220 [ce6:V:11685035-11685052:+] 0.5299 155 7 -18.27 -0.5212 MIMAT0000044 cel-miR-72 179601 ape-1 agUCGAUACGGUUG--UAGAACGGa ||: :| :|| | ||||||| cuAGUAGUAUCAUCUUCUCUUGCCa 2 22 134 158 [ce6:V:11684966-11684990:+] 0.5299 148 7 -14.55 -1.0953 MIMAT0000045 cel-miR-73 179601 ape-1 ugaCUUGACGGAUGUAGAACGGu | |: :|| | ||||||| guaGUAUCAUCUUC-UCUUGCCa 2 21 137 158 [ce6:V:11684969-11684990:+] 0.5299 146 7 -15.32 -1.0789 MIMAT0000046 cel-miR-74 179601 ape-1 acAUC-UGACGGUAAAGAACGGu ||| |: :| | ||||||| agUAGUAUCAUCUUCUCUUGCCa 2 21 136 158 [ce6:V:11684968-11684990:+] 0.5299 151 7 -19.22 -1.0977 MIMAT0000058 cel-miR-85 179601 ape-1 cguGCUGAA-AAGUUUAUGAAACAu || ||| | :| |||||| | cacCGUCUUAUGUAUCUACUUUUUa 2 22 336 360 [ce6:V:11685168-11685192:+] 0.5299 128 0 -9.62 -0.1310 MIMAT0000282 cel-miR-124 179601 ape-1 accguaaguggcgCACGGAAu ||||||| cacccccguuuuaGUGCCUUu 2 9 247 267 [ce6:V:11685079-11685099:+] 0.5299 140 7 -14.94 -1.0269 MIMAT0000307 cel-miR-251 179601 ape-1 uuauucucgccgugguGAUGAAuu |||||| ucaccgucuuauguauCUACUUuu 3 9 335 358 [ce6:V:11685167-11685190:+] 0.5299 120 0 -11.77 -0.2266 MIMAT0000308 cel-miR-252 179601 ape-1 aaUGGACGCCGUG-AU-GAUGAAua ||| |: :|: || |||||| ucACC-GUCUUAUGUAUCUACUUuu 3 22 335 358 [ce6:V:11685167-11685190:+] 0.5299 125 0 -10.93 -0.2266 MIMAT0000699 cel-miR-357 179601 ape-1 ugaGGACGUUG--CUGA---CCGUAAAu | ||||:| |:| ||||||| ucaCAUGCAGCCUUAUUUUAGGCAUUUc 2 21 75 102 [ce6:V:11684907-11684934:+] 0.5299 146 7 -14.10 -0.8482 MIMAT0000749 cel-lsy-6 179601 ape-1 gcuuuacgcagaGUAUGUUUu :|||:||| auaacuuuuaaaUAUAUAAAa 2 10 385 405 [ce6:V:11685217-11685237:+] 0.5299 125 0 -7.35 -0.2161

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score ape-1 RAID00002032 cel-miR-251 miRNA MIMAT0000307 ape-1 mRNA 179601 Prediction 0.1828 ape-1 RAID00215036 cel-miR-124-3p miRNA MIMAT0000282 ape-1 mRNA 179601 Prediction 0.2202 ape-1 RAID00639349 cel-miR-72-5p miRNA MIMAT0000044 ape-1 mRNA 179601 Prediction 0.1828 ape-1 RAID00751314 cel-miR-252-5p miRNA MIMAT0000308 ape-1 mRNA 179601 Prediction 0.1828 ape-1 RAID01414246 cel-miR-85-3p miRNA MIMAT0000058 ape-1 mRNA 179601 Prediction 0.1828 ape-1 RAID01464593 cel-miR-71-5p miRNA MIMAT0000043 ape-1 mRNA 179601 Prediction 0.2202 ape-1 RAID02156908 cel-miR-357-3p miRNA MIMAT0000699 ape-1 mRNA 179601 Prediction 0.1828 ape-1 RAID02632398 cel-miR-74-3p miRNA MIMAT0000046 ape-1 mRNA 179601 Prediction 0.1828 ape-1 RAID03134491 cel-lsy-6-3p miRNA MIMAT0000749 ape-1 mRNA 179601 Prediction 0.1828 ape-1 RAID03457512 cel-miR-73-3p miRNA MIMAT0000045 ape-1 mRNA 179601 Prediction 0.1828