DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000027 cel-miR-56* 176380 cbp-1 auguuggguuuuaccuAGGCGGu |||||| ccgaugucuugauaacUCCGCCc 2 8 9 31 [ce6:III:9774480-9774502:+] 0.5491 120 6 -14.24 -0.1822 MIMAT0015116 cel-miR-240* 176380 cbp-1 guAAGAUC-AGAGU-UUUAG-GAGc ||| || ||:| :|||| ||| caUUCAAGCGCUUAGGAAUCGCUCu 2 21 75 99 [ce6:III:9774546-9774570:+] 0.5502 122 0 -15.64 -0.8708 MIMAT0000316 cel-miR-261 176380 cbp-1 gcaCUU-UUGA-UUUUUCGAu ||| :|| ||||||| uagGAAUCGCUCUAAAAGCUc 2 17 87 107 [ce6:III:9774558-9774578:+] 0.5502 142 7 -8.77 -0.7754 MIMAT0006586 cel-miR-1819 176380 cbp-1 agGUAGUUCGAGU-UAG-UAAGGu |||:|| || : :|| ||||| cuCAUUAAUCUGGUGUCUAUUCCc 2 21 105 128 [ce6:III:9774576-9774599:+] 0.5502 127 0 -13.53 -1.1996 MIMAT0006587 cel-miR-1820 176380 cbp-1 cuuguaguagcuuuuuguUAGUUUu |||||| cccaaaaaauuuaucaccAUCAAAu 2 8 126 150 [ce6:III:9774597-9774621:+] 0.5502 120 6 -5.87 -0.1823 MIMAT0006774 cel-miR-1832 176380 cbp-1 uaguAGCUAAGCGAGGCGGGu |:|| | |||||||| ugucUUGA-UAACUCCGCCCc 2 18 13 32 [ce6:III:9774484-9774503:+] 0.5491 151 7 -23.47 -1.0728 MIMAT0011441 cel-miR-2213* 176380 cbp-1 aguuuGACACUUCUCAGGCGGu || ||| | |||||| gauguCU-UGAUAACUCCGCCc 2 18 11 31 [ce6:III:9774482-9774502:+] 0.5491 123 6 -13.58 -0.1822 MIMAT0011459 cel-miR-2219* 176380 cbp-1 cugcuacacgcucucUUUCGAca |||||| uuaggaaucgcucuaAAAGCUca 3 9 86 108 [ce6:III:9774557-9774579:+] 0.5502 120 0 -5.73 -0.1434 MIMAT0011462 cel-miR-2220 176380 cbp-1 gacauucaGGUGUUUGUUAAcu :|:: ||||||| uuucuuucUCGUUAACAAUUaa 3 15 217 238 [ce6:III:9774688-9774709:+] 0.5502 130 0 -6.25 -0.6071 MIMAT0000038 cel-miR-66 176380 cbp-1 aguguAGGGAUUAG-UCACAG-UAc || :||||| :||||| || aaagcUCAUUAAUCUGGUGUCUAUu 2 19 101 125 [ce6:III:9774572-9774596:+] 0.5502 129 0 -15.18 -0.6271 MIMAT0000042 cel-miR-70 176380 cbp-1 uaccuUUGUGG-UUGCUGCAUAAu | ||:| ||: |||||| uuaucACCAUCAAAUUUCGUAUUa 2 19 136 159 [ce6:III:9774607-9774630:+] 0.5502 125 6 -14.94 -0.5053 MIMAT0000049 cel-miR-77 176380 cbp-1 accugucGAUACCGGACUACUu | || :||||||| uuguaucCGAUUUUCUGAUGAu 2 16 168 189 [ce6:III:9774639-9774660:+] 0.5502 147 7 -10.84 -0.8210 MIMAT0000284 cel-miR-229 176380 cbp-1 gcuaccUUUUC---U-AUU-GGUCACAG-UAa ||||| | ||| |::||||| || cgcucuAAAAGCUCAUUAAUCUGGUGUCUAUu 2 21 94 125 [ce6:III:9774565-9774596:+] 0.5502 121 0 -14.41 -0.6271 MIMAT0004216 cel-miR-255 176380 cbp-1 gacauuuUUUAGAGAAGUCAAa |||| |:|||| || aacaauuAAAUAUUUUCAAUUa 2 16 230 251 [ce6:III:9774701-9774722:+] 0.5502 131 0 -3.76 -0.3172 MIMAT0004220 cel-miR-785 176380 cbp-1 agaUG-UGUUUUGU-UAAGUGAAu || |: |||:| |||| || uuaACAAUUAAAUAUUUUCAAUUa 2 20 228 251 [ce6:III:9774699-9774722:+] 0.5502 121 0 -7.34 -0.3225 MIMAT0004232 cel-miR-797 176380 cbp-1 agAAGAGUA-ACACU-AACGAC-ACUAu ||:|::| | || || ||| |||| uaUUUUUGUAUCCGAUUUUCUGAUGAUg 2 24 163 190 [ce6:III:9774634-9774661:+] 0.5502 125 0 -10.97 -0.6110

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score cbp-1 RAID00503440 cel-miR-255-3p miRNA MIMAT0004216 cbp-1 mRNA 176380 Prediction 0.1828 cbp-1 RAID00793985 cel-miR-242 miRNA MIMAT0000298 cbp-1 mRNA 176380 CLIP-seq 0.5483 cbp-1 RAID01358753 cel-miR-70-3p miRNA MIMAT0000042 cbp-1 mRNA 176380 CLIP-seq//Prediction 0.6308 cbp-1 RAID01383614 cel-miR-229-5p miRNA MIMAT0000284 cbp-1 mRNA 176380 CLIP-seq//Prediction 0.6308 cbp-1 RAID01440187 cel-miR-250-3p miRNA MIMAT0000306 cbp-1 mRNA 176380 CLIP-seq 0.5483 cbp-1 RAID01487386 cel-miR-87-3p miRNA MIMAT0000060 cbp-1 mRNA 176380 CLIP-seq 0.5483 cbp-1 RAID01751428 cel-miR-2-3p miRNA MIMAT0000004 cbp-1 mRNA 176380 CLIP-seq 0.5483 cbp-1 RAID01895728 cel-miR-233-3p miRNA MIMAT0000288 cbp-1 mRNA 176380 CLIP-seq 0.5483 cbp-1 RAID02117717 cel-miR-785-3p miRNA MIMAT0004220 cbp-1 mRNA 176380 Prediction 0.1828 cbp-1 RAID02573266 cel-miR-66-5p miRNA MIMAT0000038 cbp-1 mRNA 176380 CLIP-seq//Prediction 0.6308 cbp-1 RAID02843691 cel-miR-43-3p miRNA MIMAT0000014 cbp-1 mRNA 176380 CLIP-seq 0.5483 cbp-1 RAID03042622 cel-miR-248 miRNA MIMAT0000304 cbp-1 mRNA 176380 CLIP-seq 0.5483 cbp-1 RAID03052704 cel-miR-797-5p miRNA MIMAT0004232 cbp-1 mRNA 176380 CLIP-seq//Prediction 0.6308 cbp-1 RAID03472635 cel-miR-356a miRNA MIMAT0000698 cbp-1 mRNA 176380 CLIP-seq 0.5483 cbp-1 RAID03569452 cel-miR-77-3p miRNA MIMAT0000049 cbp-1 mRNA 176380 CLIP-seq//Prediction 0.6308