DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0015111 cel-miR-124* 172508 chs-1 ugauuucagugaucccACGUACg |||||| uuaguauuauuauuauUGCAUGc 2 8 41 63 [ce6:I:7559492-7559514:+] 0.4845 120 6 -14.16 -0.1217 MIMAT0000317 cel-miR-262 172508 chs-1 uagucuuuugUAGCUCUUUg | :|||||| ccucuuuuuaAAUGAGAAAc 2 11 141 160 [ce6:I:7559592-7559611:+] 0.4664 126 6 -10.58 -0.1233 MIMAT0004229 cel-miR-794 172508 chs-1 ucACUGUUGCUAC--UAAUGGAGu | |: :| ||| ||||||| uaUUAUUGC-AUGCUCUUACCUCa 2 21 51 73 [ce6:I:7559502-7559524:+] 0.4845 141 7 -12.38 -0.8512 MIMAT0004229 cel-miR-794 172508 chs-1 ucACUGUUGCUAC--UAAUGGAGu | |: :| ||| ||||||| uaUUAUUGC-AUGCUCUUACCUCa 2 21 51 73 [ce6:I:7559502-7559524:+] 0.4845 141 7 -12.38 -0.8443 MIMAT0005031 cel-miR-1018 172508 chs-1 gacauucagguuACUAGAGAGa | ||||||| caugcucuuaccUCAUCUCUCg 2 11 59 80 [ce6:I:7559510-7559531:+] 0.4845 142 7 -11.54 -0.4889 MIMAT0005031 cel-miR-1018 172508 chs-1 gacauucagguuACUAGAGAGa | ||||||| caugcucuuaccUCAUCUCUCa 2 11 59 80 [ce6:I:7559510-7559530,7559907-7559907:+] 0.5796 142 7 -11.34 -0.9644 MIMAT0015266 cel-miR-1822* 172508 chs-1 cggcuaucGAAAGGGU--CUCUUUGa ||||:: | ||||||| uucacccuCUUUUUAAAUGAGAAACu 2 17 136 161 [ce6:I:7559587-7559612:+] 0.4664 151 7 -15.49 -1.1301 MIMAT0011454 cel-miR-2209b 172508 chs-1 acUUCGUGUUGGCGAGUAGAGa | || | | |||||||| gcAUGCUCUUAC-CUCAUCUCu 2 21 58 78 [ce6:I:7559509-7559529:+] 0.4845 146 7 -17.88 -0.4614 MIMAT0011454 cel-miR-2209b 172508 chs-1 acUUCGUGUUGGCGAGUAGAGa | || | | |||||||| gcAUGCUCUUAC-CUCAUCUCu 2 21 58 78 [ce6:I:7559509-7559529:+] 0.4845 146 7 -17.88 -0.4265 MIMAT0014446 cel-miR-2953-5p 172508 chs-1 uaaAAGUGCUUGUGAAGACAu ||:|: | |||||||| gccUUUAUUA--ACUUCUGUu 2 19 80 98 [ce6:I:7559531-7559549:+] 0.4845 151 7 -11.61 -1.0957 MIMAT0000291 cel-miR-236 172508 chs-1 ucgcaGUAAUGGACUGUCAUAAu || |||| :|||||| uauugCA-UACCAAUUAGUAUUa 2 19 28 49 [ce6:I:7559479-7559500:+] 0.4845 136 6 -14.14 -0.2198 MIMAT0000291 cel-miR-236 172508 chs-1 ucgcaGUAAUGGACUGUCAUAAu || |||| :|||||| uauugCA-UACCAAUUAGUAUUa 2 19 28 49 [ce6:I:7559479-7559500:+] 0.4845 136 6 -14.14 -0.1366 MIMAT0000700 cel-miR-358 172508 chs-1 cuggAACUGUCCCUAUGGUUa || |: | ||||||| uuuaUUUAU-UGCAUACCAAu 2 18 22 41 [ce6:I:7559473-7559492:+] 0.4845 143 7 -9.94 -0.8898 MIMAT0000700 cel-miR-358 172508 chs-1 cuggAACUGUCCCUAUGGUUa || |: | ||||||| uuuaUUUAU-UGCAUACCAAu 2 18 22 41 [ce6:I:7559473-7559492:+] 0.4845 143 7 -9.94 -0.8888 MIMAT0004221 cel-miR-786 172508 chs-1 uaaCUUGUAGUAA--GUCCC-GUAAu ||:|| |:|| ||||| |||| ggcGAGCA-CGUUUGCAGGGUCAUUc 2 21 236 260 [ce6:I:7559687-7559711:+] 0.5231 129 0 -19.16 -0.4044

DNA & RNA Element - miRNAMap Gene Name Mature miRNA Target Start Target End miRNA 3-5 Alignment Target 5-3 chs-1; CELE_T25G3.2; T25G3.2 cel-let-7 51 75 UUGAU-AUGUUGGAUGAUGGAGU- |:|| |:|| || :||||||| UAUUAUUGCAUGCUCUUACCUCAU chs-1; CELE_T25G3.2; T25G3.2 cel-miR-241 52 75 -AGUAAAGAGCGUGGAUGGAGU- |:||| | :|| |:||||||| AUUAUUGCAUGCUCUUACCUCAU chs-1; CELE_T25G3.2; T25G3.2 cel-miR-48 55 75 -AGCGUAGAUGACUCGGAUGGAGU- |:|||| :|| |:||||||| AUUGCAU--GCU---CUUACCUCAU chs-1; CELE_T25G3.2; T25G3.2 cel-miR-794 57 75 UCACUGUUGCUACU--AAUGGAGU- :| ||| |||||||| ------UGC-AUGCUCUUACCUCAU chs-1; CELE_T25G3.2; T25G3.2 cel-miR-795 55 75 UUCGAGCG-ACUAGUUAGAUGGAGU- |:|| || || :||||||| ---AUUGCAUGCUC---UUACCUCAU chs-1; CELE_T25G3.2; T25G3.2 cel-miR-84 53 75 AUGUUAUAAUGUAUGA---UGGAGU- ||||:|||:|| |||||| ----UUAUUGCAUGCUCUUACCUCAU chs-1; CELE_T25G3.2; T25G3.2 cel-miR-241 53 73 AGUAAAGAGCGUGGAUGGAGU |:||| | :|| |:||||||| TTATTGCATGCTCTTACCTCA chs-1; CELE_T25G3.2; T25G3.2 cel-miR-48 56 73 AGCGUAGAUGACUCGGAUGGAGU |:||| |:|| |:||||||| TTGCA--TGCT---CTTACCTCA chs-1; CELE_T25G3.2; T25G3.2 cel-miR-795 52 73 uucgAGCG-ACUAGUUAGAUGGAGU |:|| || || :||||||| attaTTGCATGCTC---TTACCTCA chs-1; CELE_T25G3.2; T25G3.2 cel-miR-84 49 73 augUUAUAAUGUAU---GAUGGAGU | ||||:|||: :||||||| attATTATTGCATGCTCTTACCTCA chs-1; CELE_T25G3.2; T25G3.2 cel-miR-794 66 73 UCACUGU--------------------UGCUACU--AAUGGAGU :| ||| |||||||| UGCAUACCAAUUAGUAUUAUUAUUAUUGC-AUGCUCUUACCUCAU

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score chs-1 RAID01056007 cel-miR-786-3p miRNA MIMAT0004221 chs-1 mRNA 172508 Prediction 0.1828 chs-1 RAID01490345 cel-miR-236-3p miRNA MIMAT0000291 chs-1 mRNA 172508 Prediction 0.1828 chs-1 RAID02017888 cel-miR-358-3p miRNA MIMAT0000700 chs-1 mRNA 172508 Prediction 0.1828 chs-1 RAID02762666 cel-mir-2953 miRNA MI0013633 chs-1 mRNA 172508 Prediction 0.1828