DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0015115 cel-miR-239b* 172303 chn-1 aaaAACGUGUGGUGUUUUCACg || :|| | :||||||| caaUUUUACUGC-UAAAAGUGa 2 20 256 276 [ce6:I:6181362-6181382:-] 0.4785 149 7 -11.89 -0.7226 MIMAT0000309 cel-miR-253* 172303 chn-1 ccagucacaAUCACUCCACAc || ||||||| uguaugaaaUAAAGAGGUGUg 2 13 291 311 [ce6:I:6181327-6181347:-] 0.4785 144 7 -15.57 -1.1761 MIMAT0000324 cel-miR-268 172303 chn-1 ugGUUUGACGAAGAUUAAG-AACGg | | ||:||| |:||| |||| uuCUACAUGUUUC-AGUUCUUUGCa 2 23 72 95 [ce6:I:6181543-6181566:-] 0.4785 128 0 -16.86 -1.2459 MIMAT0005033 cel-miR-1020 172303 chn-1 gacUUUCACAGUGUCUUAUua | | | |: ||||||| ---AUACUAUU-CAGAAUAuu 3 19 1 17 [ce6:I:6181621-6181637:-] 0.4785 128 0 -6.75 -0.1286 MIMAT0011460 cel-miR-2219 172303 chn-1 gaagucgaaagggaGCGUGAAGc :||||||| uuucugguagaaagUGCACUUCa 2 10 216 238 [ce6:I:6181400-6181422:-] 0.4785 141 7 -14.72 -1.0532 MIMAT0011460 cel-miR-2219 172303 chn-1 gaaGUCGAAAGGGAGCG-UGAAGc | |||| :| :|| ||||| uggCUGCUUCUCAAUGCAACUUCu 2 21 42 65 [ce6:I:6181573-6181596:-] 0.4785 124 0 -16.82 -0.6713 MIMAT0000003 cel-miR-1 172303 chn-1 augUAUGAAGAAA--UGUAAGGu || | | || ||||||| aaaAUUCAACAUUAAACAUUCCu 2 19 20 42 [ce6:I:6181596-6181618:-] 0.4785 145 7 -9.65 -0.9678 MIMAT0000043 cel-miR-71 172303 chn-1 agugauggguacAGAAAGu |||||| uagcuuuaguuuUCUUUCa 2 8 184 202 [ce6:I:6181436-6181454:-] 0.4785 120 6 -8.58 -0.2213 MIMAT0000047 cel-miR-75 172303 chn-1 acuucggccAACCAUCGAAAUu || |||||||| uugguguauUUUUUAGCUUUAg 2 14 171 192 [ce6:I:6181446-6181467:-] 0.4785 149 7 -12.71 -1.1683 MIMAT0000051 cel-miR-79 172303 chn-1 ucGAAAC-CAU--UGGAUCGAAAUa ||| | ||| ::|||||||| auCUUGGUGUAUUUUUUAGCUUUAg 2 21 168 192 [ce6:I:6181446-6181470:-] 0.4785 154 7 -16.91 -1.1683 MIMAT0000059 cel-miR-86 172303 chn-1 cugacacCGUUUCGUAAGUGAAu |||| : ||||||| ucucaauGCAACUUCUUCACUUu 2 17 50 72 [ce6:I:6181566-6181588:-] 0.4785 152 7 -10.58 -0.4697 MIMAT0000287 cel-miR-232 172303 chn-1 aguggcGUCAAUUCUACGUAAAu ||||| ||||||| auguuuCAGUU-CUUUGCAUUUu 2 18 78 99 [ce6:I:6181539-6181560:-] 0.4785 147 7 -13.07 -1.1663 MIMAT0000304 cel-miR-248 172303 chn-1 acucgcAAUAG-GCACGUGC-ACAUa ||||: : || ||| |||| aaacuuUUAUUGUUUGAACGCUGUAc 2 19 114 139 [ce6:I:6181499-6181524:-] 0.4785 121 0 -11.20 -0.6502 MIMAT0004216 cel-miR-255 172303 chn-1 gacauuuUUUAGAGAAGUCAAa | || | ||||||| cuuuucuACAUGU-UUCAGUUc 2 16 69 89 [ce6:I:6181549-6181569:-] 0.4785 145 7 -8.15 -0.9873 MIMAT0000314 cel-miR-259 172303 chn-1 acGAUGGUCUAAUCCUACUCUAAa :|||: | | | :||||||| uuUUACU-GCUAAAAGUGAGAUUc 2 23 259 281 [ce6:I:6181357-6181379:-] 0.4785 152 7 -13.08 -0.5578 MIMAT0000699 cel-miR-357 172303 chn-1 ugAGGACGUUGCUGACCGUAAAu | :| ||:: :| |||||| caUGUUUCAGUUCUUUGCAUUUu 2 22 77 99 [ce6:I:6181539-6181561:-] 0.4785 125 6 -7.35 -0.1469 MIMAT0004220 cel-miR-785 172303 chn-1 agAUGUGUUUUGUU----AAGUGAAu | | ||| :||| ||||||| gcUUCUCAAUGCAACUUCUUCACUUu 2 21 47 72 [ce6:I:6181566-6181591:-] 0.4785 151 7 -12.63 -0.4764 MIMAT0004220 cel-miR-785 172303 chn-1 agAUGUGUUUUGUUAAG-UGAAu || | |: :|| ||| |||| ggUAGAAAGUGCACUUCAACUUg 2 21 221 243 [ce6:I:6181395-6181417:-] 0.4785 124 0 -7.94 -0.4663 MIMAT0004231 cel-miR-796 172303 chn-1 aaUGA-UUGGAGUUGAUGUAAGGu |:| ||| |:|| ||||||| aaAUUCAACAUUAA--ACAUUCCu 2 22 21 42 [ce6:I:6181596-6181617:-] 0.4785 157 7 -14.21 -0.9436

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score chn-1 RAID00048501 cel-miR-357-3p miRNA MIMAT0000699 chn-1 mRNA 172303 Prediction 0.1828 chn-1 RAID00304715 cel-miR-796 miRNA MIMAT0004231 chn-1 mRNA 172303 Prediction 0.2202 chn-1 RAID00614599 cel-miR-785-3p miRNA MIMAT0004220 chn-1 mRNA 172303 Prediction 0.1828 chn-1 RAID01139864 cel-miR-1-3p miRNA MIMAT0000003 chn-1 mRNA 172303 Prediction 0.1828 chn-1 RAID01259502 cel-miR-232-3p miRNA MIMAT0000287 chn-1 mRNA 172303 Prediction 0.2202 chn-1 RAID01532815 cel-miR-248 miRNA MIMAT0000304 chn-1 mRNA 172303 Prediction 0.1828 chn-1 RAID01719074 cel-miR-259-5p miRNA MIMAT0000314 chn-1 mRNA 172303 Prediction 0.1828 chn-1 RAID02708240 cel-miR-79-3p miRNA MIMAT0000051 chn-1 mRNA 172303 Prediction 0.2381 chn-1 RAID02941639 cel-miR-86-5p miRNA MIMAT0000059 chn-1 mRNA 172303 Prediction 0.1828 chn-1 RAID03051392 cel-miR-255-3p miRNA MIMAT0004216 chn-1 mRNA 172303 Prediction 0.2202 chn-1 RAID03469907 cel-miR-71-5p miRNA MIMAT0000043 chn-1 mRNA 172303 Prediction 0.1828 chn-1 RAID03748874 cel-miR-75-3p miRNA MIMAT0000047 chn-1 mRNA 172303 Prediction 0.2202