DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0015096 cel-miR-46* 178547 cul-3 gacaguuaucuGCCGAGAGaa | |||||| uucacucucauCUGCUCUCca 3 11 32 52 [ce6:V:184486-184506:+] 0.4659 122 0 -11.73 -0.1476 MIMAT0015096 cel-miR-46* 178547 cul-3 gacaguuaucugccGAGAGAa |||||| uuuauuuauuccuuCUCUCUu 2 8 142 162 [ce6:V:184596-184616:+] 0.5163 120 6 -11.32 -0.1566 MIMAT0015097 cel-miR-47* 178547 cul-3 ugacaguuaucuGACGAGAGaa |||||||| uuucacucucauCUGCUCUCca 3 11 31 52 [ce6:V:184485-184506:+] 0.4659 130 0 -17.56 -0.1476 MIMAT0015097 cel-miR-47* 178547 cul-3 ugacaguuaucugacGAGAGAa |||||| auuuauuuauuccuuCUCUCUu 2 8 141 162 [ce6:V:184595-184616:+] 0.5163 120 6 -12.11 -0.1566 MIMAT0015099 cel-miR-51* 178547 cul-3 acGUGGACAUGGACGA-AGGUAc |||: |:||||| ||||| uuCACUCUCAUCUGCUCUCCAUu 2 21 32 54 [ce6:V:184486-184508:+] 0.4659 132 0 -19.84 -0.6977 MIMAT0015110 cel-miR-84* 178547 cul-3 cgGCU-CAAUCAACUUUGU-AACAc :|| |||: | :|||| |||| ccUGAUGUUGCCUUGAACAUUUGUa 2 22 185 209 [ce6:V:184639-184663:+] 0.5009 124 0 -12.94 -0.8149 MIMAT0015119 cel-miR-247* 178547 cul-3 ccAUUAAUCUUUGA-AAAGAGAu || ||| |:| |||||| uuUAUUUAUUUAUUCCUUCUCUc 2 21 138 160 [ce6:V:184592-184614:+] 0.5163 123 6 -6.47 -0.1878 MIMAT0000313 cel-miR-258 178547 cul-3 uuuuccUAAGGAGAGUUUUGg | || |:||||||: cccccaAAUCAUUUCAAAAUu 2 16 239 259 [ce6:V:184693-184713:+] 0.5009 139 0 -8.40 -0.1989 MIMAT0015240 cel-miR-788* 178547 cul-3 gcuaaGAUUAGGUAAAGg | || :|||||| uucccCCAAAUCAUUUCa 2 14 237 254 [ce6:V:184691-184708:+] 0.5009 133 6 -7.35 -0.3668 MIMAT0015241 cel-miR-797* 178547 cul-3 uaAAGUGUCUUUGGUUA-CUUUu ||: :||||| ||| |||| gaUUUUUAGAAA-AAAUCGAAAa 2 21 408 429 [ce6:V:184862-184883:+] 0.5000 126 0 -10.17 -1.0866 MIMAT0005031 cel-miR-1018 178547 cul-3 gacauucagguuacuAGAGAGa |||||| uauuuauuuauuccuUCUCUCu 2 8 140 161 [ce6:V:184594-184615:+] 0.5163 120 6 -11.94 -0.1250 MIMAT0005522 cel-miR-1021 178547 cul-3 ggcuccuAAAGUGUACUAGAGUGAa | || : | ||||||| uuccuucUCUCUUUUUUUCUCACUc 2 19 150 174 [ce6:V:184604-184628:+] 0.5086 146 7 -10.11 -0.9021 MIMAT0006586 cel-miR-1819 178547 cul-3 agGUAGUUCGAG-UUAGUAAGGu :||: | | |||||||:| auUAUUUCCCCCAAAUCAUUUCa 2 21 232 254 [ce6:V:184686-184708:+] 0.5009 135 0 -13.27 -0.1475 MIMAT0015267 cel-miR-1829a* 178547 cul-3 auguuuguuaaucuUCAGGGGAa :||||||| aaaccgacacccuuGGUCCCCUu 2 10 430 452 [ce6:V:184884-184906:+] 0.5000 141 7 -18.84 -0.5592 MIMAT0011434 cel-miR-2209c 178547 cul-3 acAUCACAUUGGCCACCAGAAAa || ||||: :| ||||||| ugUA-UGUAGAUG--GGUCUUUu 2 22 206 225 [ce6:V:184660-184679:+] 0.5009 152 7 -17.64 -0.8183 MIMAT0011454 cel-miR-2209b 178547 cul-3 acuucguguuggcgAGUAGAGa ||||||| uuauuuucauuauaUCAUCUCg 2 9 266 287 [ce6:V:184720-184741:+] 0.5009 140 7 -11.48 -1.1323 MIMAT0000035 cel-miR-63 178547 cul-3 aaagguugagcgaagUCACAGUAu :||||||| uuuguccccaccaagGGUGUCAUu 2 10 331 354 [ce6:V:184785-184808:+] 0.5000 141 7 -12.32 -0.4606 MIMAT0000035 cel-miR-63 178547 cul-3 aaagguugagcgaagucACAGUAu |||||| gaacauugagcacaaaaUGUCAUa 2 8 539 562 [ce6:V:184993-185016:+] 0.5000 120 6 -11.15 -0.1135 MIMAT0000036 cel-miR-64 178547 cul-3 aagccauugcgaagUCACAGUAu :||||||| uuguccccaccaagGGUGUCAUu 2 10 332 354 [ce6:V:184786-184808:+] 0.5000 141 7 -11.40 -0.4639 MIMAT0000036 cel-miR-64 178547 cul-3 aagccauugcgaagucACAGUAu |||||| aacauugagcacaaaaUGUCAUa 2 8 540 562 [ce6:V:184994-185016:+] 0.5000 120 6 -9.15 -0.1124 MIMAT0000037 cel-miR-65 178547 cul-3 aagccaaugcgaagUCACAGUAu :||||||| uuguccccaccaagGGUGUCAUu 2 10 332 354 [ce6:V:184786-184808:+] 0.5000 141 7 -11.40 -0.4639 MIMAT0000037 cel-miR-65 178547 cul-3 aagccaaugcgaagucACAGUAu |||||| aacauugagcacaaaaUGUCAUa 2 8 540 562 [ce6:V:184994-185016:+] 0.5000 120 6 -9.15 -0.1124 MIMAT0000038 cel-miR-66 178547 cul-3 aguGUAGGGAU--UAGUCACAGUAc ::|||| | | :||||||| uuuUGUCCCCACCAAGGGUGUCAUu 2 21 330 354 [ce6:V:184784-184808:+] 0.5000 151 7 -15.57 -0.4572 MIMAT0000038 cel-miR-66 178547 cul-3 aguguagggauuagucACAGUAc |||||| aacauugagcacaaaaUGUCAUa 2 8 540 562 [ce6:V:184994-185016:+] 0.5000 120 6 -8.15 -0.1124 MIMAT0000048 cel-miR-76 178547 cul-3 aguuccgaaGUAGUUGUUGCUu || ||||||||| cuuaaaacaCAGCAACAACGAu 2 14 72 93 [ce6:V:184526-184547:+] 0.4659 157 7 -15.33 -0.8348 MIMAT0000284 cel-miR-229 178547 cul-3 gcuaccuuuucuauUGGU---CACAGUAa |||| ||||||| aaguuuuuguccccACCAAGGGUGUCAUu 2 13 326 354 [ce6:V:184780-184808:+] 0.5000 143 7 -13.48 -0.4672 MIMAT0000284 cel-miR-229 178547 cul-3 gcuaccuuuucuauuggucACAGUAa |||||| cugaacauugagcacaaaaUGUCAUa 2 8 537 562 [ce6:V:184991-185016:+] 0.5000 120 6 -8.00 -0.1124 MIMAT0000287 cel-miR-232 178547 cul-3 aguGGCGUCAAU-UCUACGUAAAu |:|::|||| | ||||| uuuCUGUGGUUAUUUUUACAUUUa 2 21 112 135 [ce6:V:184566-184589:+] 0.4911 123 0 -12.86 -0.1073 MIMAT0004227 cel-miR-792 178547 cul-3 agacuuucAACUUCU---CUAAAGUu ||||| | ||||||| gggugucaUUGAAUAAUCGAUUUCAa 2 16 345 370 [ce6:V:184799-184824:+] 0.5000 150 7 -9.98 -0.9062 MIMAT0004227 cel-miR-792 178547 cul-3 agacuuucaacuucucUAAAGUu |||||| uuauuucccccaaaucAUUUCAa 2 8 233 255 [ce6:V:184687-184709:+] 0.5009 120 6 -4.33 -0.4154

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score cul-3 RAID00147939 cel-miR-792-3p miRNA MIMAT0004227 cul-3 mRNA 178547 Prediction 0.1828 cul-3 RAID00302347 cel-miR-63-3p miRNA MIMAT0000035 cul-3 mRNA 178547 Prediction 0.1828 cul-3 RAID01025702 cel-miR-229-5p miRNA MIMAT0000284 cul-3 mRNA 178547 Prediction 0.1828 cul-3 RAID02212080 cel-miR-66-5p miRNA MIMAT0000038 cul-3 mRNA 178547 Prediction 0.1828 cul-3 RAID02411685 cel-miR-232-3p miRNA MIMAT0000287 cul-3 mRNA 178547 Prediction 0.1828 cul-3 RAID03061167 cel-miR-65-5p miRNA MIMAT0000037 cul-3 mRNA 178547 Prediction 0.1828 cul-3 RAID03933951 cel-miR-64-5p miRNA MIMAT0000036 cul-3 mRNA 178547 Prediction 0.1828 cul-3 RAID04062094 cel-miR-76-3p miRNA MIMAT0000048 cul-3 mRNA 178547 Prediction 0.1828