DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000313 cel-miR-258 179413 cul-5 uuuuCCUAAGGAGAGUUUUGg || || :||||||||: ucucGGCUUAUUCUCAAAAUa 2 18 160 180 [ce6:V:10183023-10183043:+] 0.4756 149 0 -12.66 -0.1181 MIMAT0005522 cel-miR-1021 179413 cul-5 ggcUCCUAAAGUGUACU-AGAGUGAa | | | | ::|| | ||||||| uauAUGUUAUAGUAUCAGUCUCACUu 2 23 28 53 [ce6:V:10182891-10182916:+] 0.4756 153 7 -13.69 -0.5757 MIMAT0011460 cel-miR-2219 179413 cul-5 gaAGUCGAAAG-GGAGCGU-GAAGc | | :| || ::|:||| |||| uaUAAUUUGUCAUUUUGCAUCUUCg 2 22 115 139 [ce6:V:10182978-10183002:+] 0.4756 120 0 -16.89 -0.9742 MIMAT0011461 cel-miR-2220* 179413 cul-5 cuauuuAUCAAAUACCAGAAUg |:|| |: ||||||| ucgauuUGGUAUG-GGUCUUAa 2 17 137 157 [ce6:V:10183000-10183020:+] 0.4756 150 7 -13.37 -0.8707 MIMAT0014446 cel-miR-2953-5p 179413 cul-5 uaAAAGUGCUUGUGAAGACAu |||||| |: :|||||| uuUUUCAC-CAUUUUUCUGUa 2 20 94 113 [ce6:V:10182957-10182976:+] 0.4756 145 6 -15.69 -0.2516 MIMAT0000015 cel-miR-44 179413 cul-5 ucgacuuacacagAGAUCAGu ||||||| ucucacuuuccgaUCUAGUCa 2 9 46 66 [ce6:V:10182909-10182929:+] 0.4756 140 7 -11.56 -0.8257 MIMAT0000016 cel-miR-45 179413 cul-5 ucgacuuacacagAGAUCAGu ||||||| ucucacuuuccgaUCUAGUCa 2 9 46 66 [ce6:V:10182909-10182929:+] 0.4756 140 7 -11.56 -0.8257 MIMAT0000033 cel-miR-61 179413 cul-5 cuACUCAUUGCCAAGAUCAGu | | | | | ||||||| ucUCACUUUCCGAUCUAGUCa 2 20 46 66 [ce6:V:10182909-10182929:+] 0.4756 147 7 -12.78 -0.8292 MIMAT0000035 cel-miR-63 179413 cul-5 aaagguugagcgaagucACAGUAu |||||| uuuucuguauuauaauuUGUCAUu 2 8 105 128 [ce6:V:10182968-10182991:+] 0.4756 120 6 -7.22 -0.1128 MIMAT0000036 cel-miR-64 179413 cul-5 aagccauugcgaagucACAGUAu |||||| uuucuguauuauaauuUGUCAUu 2 8 106 128 [ce6:V:10182969-10182991:+] 0.4756 120 6 -7.71 -0.1117 MIMAT0000037 cel-miR-65 179413 cul-5 aagccaaugcgaagucACAGUAu |||||| uuucuguauuauaauuUGUCAUu 2 8 106 128 [ce6:V:10182969-10182991:+] 0.4756 120 6 -6.76 -0.1106 MIMAT0000038 cel-miR-66 179413 cul-5 aguguagggauuagucACAGUAc |||||| uuucuguauuauaauuUGUCAUu 2 8 106 128 [ce6:V:10182969-10182991:+] 0.4756 120 6 -8.39 -0.1095 MIMAT0000284 cel-miR-229 179413 cul-5 gcuaccuuuucuauuggucACAGUAa |||||| auuuuucuguauuauaauuUGUCAUu 2 8 103 128 [ce6:V:10182966-10182991:+] 0.4756 120 6 -8.49 -0.1073 MIMAT0000287 cel-miR-232 179413 cul-5 aguGGCGUCA-AUUCUAC-GUAAAu |:|:| | ||| || ||||| uuuCUGUAUUAUAAUUUGUCAUUUu 2 21 106 130 [ce6:V:10182969-10182993:+] 0.4756 123 0 -8.18 -0.9392 MIMAT0000303 cel-miR-247 179413 cul-5 ucuucucuuaucCGAGAUCAGu | ||||||| gucucacuuuccGAUCUAGUCa 2 11 45 66 [ce6:V:10182908-10182929:+] 0.4756 142 7 -11.56 -0.8292 MIMAT0004220 cel-miR-785 179413 cul-5 agAUGUGUUUUGUUA-AGUGAAu ||:| : | ||:| |||||| guUAUA-GUAUCAGUCUCACUUu 2 21 33 54 [ce6:V:10182896-10182917:+] 0.4756 122 6 -12.24 -0.3823

DNA & RNA Element - miRNAMap Gene Name Mature miRNA Target Start Target End miRNA 3-5 Alignment Target 5-3 cul-5; ZK856.1 cel-miR-247 58 68 UCUUCUCUUAUCCGAGAUCAGU- |||||||| -------------AUCUAGUCAA cul-5; ZK856.1 cel-miR-273 136 154 GUCGGCUGUGUCAUGCCCGU :|||: :|||:|||: --UUCGAUUUGGUAUGGGUC cul-5; ZK856.1 cel-miR-34 55 82 -GUU-GGUCGAUU-GGUGUGAC-GGA- |:| |:||: :|:||:|| ||| CCGAUCUAGUCAAUUCGCAUUGGCCUC cul-5; ZK856.1 cel-miR-392 222 243 -AGUAGUGUGC-ACUAGCUACUAU ||| |||:| ||: ||:||| UUCAA-ACAUGGUGG-CGGUGAA- cul-5; ZK856.1 cel-miR-44 44 68 UCGACUUACACAG-----------AGAUCAGU- ||| |||||||| ---------AGUCUCACUUUCCGAUCUAGUCAA cul-5; ZK856.1 cel-miR-45 44 68 UCGACUUACACAG-----------AGAUCAGU- ||| |||||||| ---------AGUCUCACUUUCCGAUCUAGUCAA cul-5; ZK856.1 cel-miR-52 130 154 UCGUGCCU-UUGUAUACAUGCCCAC |||: :|: |||:|||| UGCAUCUUCGAUUUG-GUAUGGGUC cul-5; ZK856.1 cel-miR-53 130 154 UCGUGCCUUUGUUUA--CAUGCCCAC |||: |:| |||:|||| UGCAUCUU--CGAUUUGGUAUGGGUC cul-5; ZK856.1 cel-miR-59 122 147 GUAGUAGGACUAUUU-GCUAAGCU- :||||::|| |||||:|: UGUCAUUUUGCAUCUUCGAUUUGGU cul-5; ZK856.1 cel-miR-71 78 102 AGUGAUG---GGUA-CAGAAAGU- | ||| |||| ||:||||| CCUCUAACCACCAUAGUUUUUCAC cul-5; ZK856.1 cel-miR-78 48 85 CGUGUUU-GUUGGU--------------CCGGAGGU- ||| |:|:| ||||||:| UCACUUUCCGAUCUAGUCAAUUCGCAUUGGCCUCUAA cul-5; ZK856.1 cel-miR-797 217 243 -AGAAGAGUAAC-ACUAACGACACUAU ||||:||| ||:| || |||| CUCUUUUCAAACAUGGUGGCGGUGAA- cul-5; ZK856.1 cel-miR-273 132 153 GUCG--GCUGUGUCAUGCCCgu || | |||: ::|||:||| CATCTTCGATTTGGTATGGGtc cul-5; ZK856.1 cel-miR-34 56 80 GUU-GGUCGAUU-GGUGUGA-CGGA |:| |:||: || :|:||:| |||| CGATCTAGTCAATTCGCATTGGCCT cul-5; ZK856.1 cel-miR-392 220 243 AGUAGUGUGCACUA--GCUACUau |: ||| || ||:| ||:||| TTTTCAAACATGGTGGCGGTGAat cul-5; ZK856.1 cel-miR-53 128 153 ucgugccuuuGUUUA--CAUGCCCAc |:| | |||:|||| tttgcatcttCGATTTGGTATGGGTc cul-5; ZK856.1 cel-miR-78 62 83 cguGUUUGUUG-GUCCGGAGGU ||| : :| : ||||||:| agtCAATTCGCATTGGCCTCTA cul-5; ZK856.1 cel-miR-797 218 243 AGAAGAG-UAACACUAACGACACUau ||||:|| | ||:| || |||| TCTTTTCAAACATGGTGGCGGTGAat cul-5; ZK856.1 cel-miR-247 59 66 UCUUCUCUUAUCCG---------------------AGAUCAGU |||||||| UAACUAUAUGUUAUAGUAUCAGUCUCACUUUCCGAUCUAGUCAA cul-5; ZK856.1 cel-miR-44 59 66 UCGACUUACACAG----------------------AGAUCAGU |||||||| UAACUAUAUGUUAUAGUAUCAGUCUCACUUUCCGAUCUAGUCAA cul-5; ZK856.1 cel-miR-45 59 66 UCGACUUACACAG----------------------AGAUCAGU |||||||| UAACUAUAUGUUAUAGUAUCAGUCUCACUUUCCGAUCUAGUCAA

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score cul-5 RAID00026796 cel-miR-61-3p miRNA MIMAT0000033 cul-5 mRNA 179413 CLIP-seq//Prediction 0.6308 cul-5 RAID00270028 cel-miR-66-5p miRNA MIMAT0000038 cul-5 mRNA 179413 CLIP-seq//Prediction 0.6308 cul-5 RAID00439277 cel-miR-232-3p miRNA MIMAT0000287 cul-5 mRNA 179413 CLIP-seq//Prediction 0.6308 cul-5 RAID01088136 cel-miR-65-5p miRNA MIMAT0000037 cul-5 mRNA 179413 CLIP-seq//Prediction 0.6308 cul-5 RAID01448717 cel-miR-247-3p miRNA MIMAT0000303 cul-5 mRNA 179413 CLIP-seq//Prediction 0.6308 cul-5 RAID01939082 cel-miR-64-5p miRNA MIMAT0000036 cul-5 mRNA 179413 CLIP-seq//Prediction 0.6308 cul-5 RAID02393196 cel-miR-63-3p miRNA MIMAT0000035 cul-5 mRNA 179413 CLIP-seq//Prediction 0.6308 cul-5 RAID02906410 cel-miR-45-3p miRNA MIMAT0000016 cul-5 mRNA 179413 CLIP-seq//Prediction 0.6308 cul-5 RAID03158093 cel-miR-229-5p miRNA MIMAT0000284 cul-5 mRNA 179413 CLIP-seq//Prediction 0.6308 cul-5 RAID03722393 cel-miR-44-3p miRNA MIMAT0000015 cul-5 mRNA 179413 CLIP-seq//Prediction 0.6308 cul-5 RAID03897157 cel-miR-785-3p miRNA MIMAT0004220 cul-5 mRNA 179413 CLIP-seq//Prediction 0.6308