DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000052 cel-miR-227 177419 dnj-11 caagucUUAGU-ACAGCUUUCGa | |:| | |:|||||| uuauucAUUUAUUCUUGAAAGCc 2 17 127 149 [ce6:IV:6588008-6588030:+] 0.5658 135 6 -11.56 -0.2245 MIMAT0015113 cel-miR-230* 177419 dnj-11 auuAUAAUUUAGCGGCUGGUUca | ||:| || ::|||||| cauUCUUGACUC-UUGACCAAcu 3 21 155 176 [ce6:IV:6588036-6588057:+] 0.5658 138 0 -10.31 -0.1091 MIMAT0000324 cel-miR-268 177419 dnj-11 ugguuUGACGAAG--AUUAAGAACgg |:| ||| | ||||||| ucuucAUUUAUUCAUUUAUUCUUGaa 3 20 120 145 [ce6:IV:6588001-6588026:+] 0.5658 134 0 -9.63 -0.1414 MIMAT0000698 cel-miR-356 177419 dnj-11 acuAAACAAGCGCAACGAGUu ||| | :|| |||||| aacUUUUUCUGCAGUGCUCAa 2 19 222 242 [ce6:IV:6588103-6588123:+] 0.5658 130 6 -13.61 -0.2134 MIMAT0005822 cel-miR-1019* 177419 dnj-11 uuuUACUUUG---AGCUUGUUACGAGUg || |||| |: :||:|||||| gucAUCAAACUUUUUCUGCAGUGCUCAa 2 23 215 242 [ce6:IV:6588096-6588123:+] 0.5658 145 6 -17.51 -0.2214 MIMAT0006587 cel-miR-1820 177419 dnj-11 cuuguaguagcuuuuuguUAGUUUu |||||| uuuuuuuuuguuucugucAUCAAAc 2 8 200 224 [ce6:IV:6588081-6588105:+] 0.5658 120 6 -6.08 -0.1139 MIMAT0006775 cel-miR-1833 177419 dnj-11 cguGUGAAUAA-AGCGUUCGGAGc ||:||||| |:| ||||||: auuCAUUUAUUCUUGAAAGCCUUa 2 21 129 152 [ce6:IV:6588010-6588033:+] 0.5658 159 0 -17.74 -0.2627 MIMAT0014446 cel-miR-2953-5p 177419 dnj-11 uaAAAGUGCUUGUGAAGACAu |||: : :::|||||| acUUUUUUUUUUGUUUCUGUc 2 20 197 217 [ce6:IV:6588078-6588098:+] 0.5658 131 6 -8.10 -0.1473 MIMAT0000015 cel-miR-44 177419 dnj-11 ucgacuuacacaGAGAUCAGu :||||||| ----------ucUUCUAGUCc 2 10 1 11 [ce6:IV:6587882-6587892:+] 0.5658 141 7 -9.65 -0.5572 MIMAT0000016 cel-miR-45 177419 dnj-11 ucgacuuacacaGAGAUCAGu :||||||| ----------ucUUCUAGUCc 2 10 1 11 [ce6:IV:6587882-6587892:+] 0.5658 141 7 -9.65 -0.5572 MIMAT0000033 cel-miR-61 177419 dnj-11 cuacucauugccAAGAUCAGu |||||||| ----------ucUUCUAGUCc 2 10 1 11 [ce6:IV:6587882-6587892:+] 0.5658 145 7 -9.08 -0.5572 MIMAT0000035 cel-miR-63 177419 dnj-11 aaagguugagcgaagucACAGUAu |||||| acuuuuuuuuuuguuucUGUCAUc 2 8 197 220 [ce6:IV:6588078-6588101:+] 0.5658 120 6 -15.44 -0.2506 MIMAT0000036 cel-miR-64 177419 dnj-11 aagccauugcgaagucACAGUAu |||||| cuuuuuuuuuuguuucUGUCAUc 2 8 198 220 [ce6:IV:6588079-6588101:+] 0.5658 120 6 -10.57 -0.2551 MIMAT0000037 cel-miR-65 177419 dnj-11 aagccaaugcgaagucACAGUAu |||||| cuuuuuuuuuuguuucUGUCAUc 2 8 198 220 [ce6:IV:6588079-6588101:+] 0.5658 120 6 -10.57 -0.2528 MIMAT0000038 cel-miR-66 177419 dnj-11 aguguAGGGAUUAGUCACAGUAc |:::| :|: |||||| cuuuuUUUUUUGUUUCUGUCAUc 2 19 198 220 [ce6:IV:6588079-6588101:+] 0.5658 122 6 -6.98 -0.2574 MIMAT0000060 cel-miR-87 177419 dnj-11 cguguggacuuugaaACGAGUg |||||| aaacuuuuucugcagUGCUCAa 2 8 221 242 [ce6:IV:6588102-6588123:+] 0.5658 120 6 -12.24 -0.2234 MIMAT0000284 cel-miR-229 177419 dnj-11 gcuaccuuuucuauuggucACAGUAa |||||| guacuuuuuuuuuuguuucUGUCAUc 2 8 195 220 [ce6:IV:6588076-6588101:+] 0.5658 120 6 -6.45 -0.2574 MIMAT0000288 cel-miR-233 177419 dnj-11 ggcguguACGCGUAACGAGUu | :||| |||||| aacuuuuUCUGCAGUGCUCAa 2 15 222 242 [ce6:IV:6588103-6588123:+] 0.5658 126 6 -14.36 -0.2194 MIMAT0000303 cel-miR-247 177419 dnj-11 ucuucucuuauccGAGAUCAGu :||||||| -----------ucUUCUAGUCc 2 10 1 11 [ce6:IV:6587882-6587892:+] 0.5658 141 7 -9.64 -0.5572 MIMAT0004216 cel-miR-255 177419 dnj-11 gacAUUUUUUAGAG---AAGUCAaa |:| || ||| |||||| ucuUGACCAA-CUCAAAUUCAGUag 3 20 165 188 [ce6:IV:6588046-6588069:+] 0.5658 124 0 -7.92 -0.1040 MIMAT0004216 cel-miR-255 177419 dnj-11 gacauuuuuuagagaAGUCAAa |||||| cucaauauucaugucUCAGUUa 2 8 238 259 [ce6:IV:6588119-6588140:+] 0.5658 120 6 -7.97 -0.1430 MIMAT0004226 cel-miR-791 177419 dnj-11 acGGAAUAGACGCCUCACG-GUUu |:|| ||||| ||||| ||| aaCUUUUUCUGC--AGUGCUCAAu 2 22 222 243 [ce6:IV:6588103-6588124:+] 0.5658 134 0 -19.23 -0.9113

DNA & RNA Element - miRNAMap Gene Name Mature miRNA Target Start Target End miRNA 3-5 Alignment Target 5-3 dnj-11; CELE_F38A5.13; F38A5.13 cel-miR-228 227 243 GGCACUUAAGUACGUCACG-GUAA ||| |||||||| || ------UUUC-UGCAGUGCUCAA- dnj-11; CELE_F38A5.13; F38A5.13 cel-miR-233 212 244 -GGCG------UGUAC---GCGUAACGAGUU- |:|: || :||| ||||||| UCUGUCAUCAAACUUUUUCUGCAGUGCUCAAU dnj-11; CELE_F38A5.13; F38A5.13 cel-miR-241 49 70 -AGUAAAGAGCGUGGAUGGAGU |:||||||:|: :|| |||| AUUAUUUCUUGUUUCU-CCUCC dnj-11; CELE_F38A5.13; F38A5.13 cel-miR-249 231 264 CCGUUGCGAGUUUU-----CAGGAC----ACU- |||::|||||| |||: ||| UGCAGUGCUCAAUAUUCAUGUCUCAGUUAUGAA dnj-11; CELE_F38A5.13; F38A5.13 cel-miR-265 16 41 -UAUGGU-GGGAA--GGAGGGAGU- |||:| |:|| :||:||||| AAUAUCUUCUCUAAAUCUUCCUCAU dnj-11; CELE_F38A5.13; F38A5.13 cel-miR-49 228 242 -AGACGUCGAAGAGCACCACGAA |||||||: ||| UUCUGCAGUG-CUCA-------- dnj-11; CELE_F38A5.13; F38A5.13 cel-miR-72 228 255 -AGUCGAUACG-GUUGUAGA-ACGGA- || || :||| |||:||: ||:|| UUCUGCAGUGCUCAAUAUUCAUGUCUC dnj-11; CELE_F38A5.13; F38A5.13 cel-miR-791 223 244 ACGGAAUAGACGCCUCACG-GUUU |:|| ||||| ||||| ||| -ACUUUUUCUGC--AGUGCUCAAU dnj-11; CELE_F38A5.13; F38A5.13 cel-miR-228 221 243 ggcacuuAAGUACGUCACG-GUaa ||| |||||||| || aaactttTTC-TGCAGTGCTCAat dnj-11; CELE_F38A5.13; F38A5.13 cel-miR-233 222 242 ggcguguACGCGUAACGAGUU | :||| ||||||| aacttttTCTGCAGTGCTCAA dnj-11; CELE_F38A5.13; F38A5.13 cel-miR-241 50 69 AGUAAAGAGCGUGGAUGGAGu |:||||||:|: :|| |||| TTATTTCTTGTTTCT-CCTCc dnj-11; CELE_F38A5.13; F38A5.13 cel-miR-265 17 39 UAU-GGUGGGA--AGGAGGGAGU ||| |: |:|| :||:||||| ATATCTTCTCTAAATCTTCCTCA dnj-11; CELE_F38A5.13; F38A5.13 cel-miR-49 212 240 AGAC----G-UCGAAGAGCAC--CACGAa |||| | | |||:|: || ||||| TCTGTCATCAAACTTTTTCTGCAGTGCTc dnj-11; CELE_F38A5.13; F38A5.13 cel-miR-72 229 253 AGUCGAUACG-GUUGU-AGAACGGA || || :||| |||:| || ||:|| TCTGCAGTGCTCAATATTCATGTCT dnj-11; CELE_F38A5.13; F38A5.13 cel-miR-791 222 243 acGGAAUAGACGCCUCACG-GUUu |:|| ||||| ||||| ||| aaCTTTTTCTGC--AGTGCTCAAt

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score dnj-11 RAID00609691 cel-miR-356a miRNA MIMAT0000698 dnj-11 mRNA 177419 CLIP-seq//Prediction 0.6308 dnj-11 RAID00883434 cel-miR-64-5p miRNA MIMAT0000036 dnj-11 mRNA 177419 CLIP-seq//Prediction 0.6308 dnj-11 RAID00980415 cel-miR-233-3p miRNA MIMAT0000288 dnj-11 mRNA 177419 CLIP-seq//Prediction 0.6478 dnj-11 RAID01215445 cel-miR-229-5p miRNA MIMAT0000284 dnj-11 mRNA 177419 CLIP-seq//Prediction 0.6308 dnj-11 RAID01275650 cel-miR-66-5p miRNA MIMAT0000038 dnj-11 mRNA 177419 CLIP-seq//Prediction 0.6308 dnj-11 RAID01523267 cel-miR-247-3p miRNA MIMAT0000303 dnj-11 mRNA 177419 Prediction 0.1828 dnj-11 RAID01691377 cel-miR-45-3p miRNA MIMAT0000016 dnj-11 mRNA 177419 Prediction 0.1828 dnj-11 RAID02071930 cel-miR-255-3p miRNA MIMAT0004216 dnj-11 mRNA 177419 CLIP-seq//Prediction 0.6478 dnj-11 RAID02165333 cel-miR-61-3p miRNA MIMAT0000033 dnj-11 mRNA 177419 Prediction 0.1828 dnj-11 RAID02575220 cel-miR-63-3p miRNA MIMAT0000035 dnj-11 mRNA 177419 CLIP-seq//Prediction 0.6308 dnj-11 RAID03091395 cel-miR-65-5p miRNA MIMAT0000037 dnj-11 mRNA 177419 CLIP-seq//Prediction 0.6308 dnj-11 RAID03357752 cel-miR-34-5p miRNA MIMAT0000005 dnj-11 mRNA 177419 CLIP-seq 0.5483 dnj-11 RAID03546331 cel-miR-44-3p miRNA MIMAT0000015 dnj-11 mRNA 177419 Prediction 0.1828 dnj-11 RAID03885875 cel-miR-87-3p miRNA MIMAT0000060 dnj-11 mRNA 177419 CLIP-seq//Prediction 0.6308 dnj-11 RAID03909844 cel-miR-791-3p miRNA MIMAT0004226 dnj-11 mRNA 177419 CLIP-seq//Prediction 0.6308