DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0015091 cel-let-7* 179045 dre-1 cauuccaucUUUUAACG-UAUCAAGu || || |: ||||||: agucauguuAAUAUGGUAAUAGUUUa 2 17 331 356 [ce6:V:6533617-6533642:-] 0.5262 135 0 -9.95 -0.2164 MIMAT0015095 cel-miR-42* 179045 dre-1 gaAGUGGCUUUUUCGUUUG-UGGGUg |||:: | | || || ||||| auUCAUUAUCACAUCACACUACCCAu 2 24 68 93 [ce6:V:6533880-6533905:-] 0.5111 123 0 -14.30 -0.8760 MIMAT0015115 cel-miR-239b* 179045 dre-1 aaAAACGUGUGGUGUUUUCACg ||| || :: : |||||| ucUUUCAACCUUUUUAAAGUGc 2 21 228 249 [ce6:V:6533724-6533745:-] 0.5262 124 6 -12.49 -0.1007 MIMAT0015119 cel-miR-247* 179045 dre-1 ccaUUAAUCUUU-GA-AAAGAGAu :||| ||:| || ||||||| accGAUUUGAGAUCUCUUUCUCUu 2 20 109 132 [ce6:V:6533841-6533864:-] 0.5262 161 7 -12.21 -0.3531 MIMAT0015119 cel-miR-247* 179045 dre-1 ccAU-UAAUCUUUGAA-AAGAGAu || || | |||| |||||| aaUAUAUCAUUCACUUCUUCUCUc 2 21 29 52 [ce6:V:6533921-6533944:-] 0.4959 123 6 -8.39 -1.0707 MIMAT0015240 cel-miR-788* 179045 dre-1 gcuaaGAUUAGGUAAAGg || | ||||||| ucacaCU-ACCCAUUUCg 2 14 81 97 [ce6:V:6533876-6533892:-] 0.5262 143 7 -9.87 -0.5232 MIMAT0005031 cel-miR-1018 179045 dre-1 gacauucagguuacuAGAGAGa |||||| auaucauucacuucuUCUCUCa 2 8 32 53 [ce6:V:6533920-6533941:-] 0.4959 120 6 -9.50 -0.1123 MIMAT0006586 cel-miR-1819 179045 dre-1 agGUAGUUCGAGUUAGUAAGgu || ||| | ||||||| ucCA-CAA-AUAUAUCAUUCac 3 21 23 42 [ce6:V:6533931-6533950:-] 0.4959 128 0 -13.84 -0.1051 MIMAT0006590 cel-miR-1823 179045 dre-1 aaugagGAUUUGUGAAG-GUCAu ||| ||:||| |||| aucacaCUACCCAUUUCGCAGUc 2 17 80 102 [ce6:V:6533871-6533893:-] 0.5262 124 0 -13.60 -1.1131 MIMAT0011425 cel-miR-2207 179045 dre-1 gaauaugugucagaguUAAGUGu |||||| ucuccacaaauauaucAUUCACu 2 8 21 43 [ce6:V:6533930-6533952:-] 0.4959 120 6 -9.92 -0.1067 MIMAT0011451 cel-miR-2217* 179045 dre-1 cuagcuguggcugacggGUGAGAc |||||| uuuuugguguaauuuaaCACUCUa 2 8 159 182 [ce6:V:6533791-6533814:-] 0.5262 120 6 -11.99 -0.1965 MIMAT0011455 cel-miR-2218a 179045 dre-1 acuccgaauuuugaacAUCAAAc |||||| cauguuaauaugguaaUAGUUUa 2 8 334 356 [ce6:V:6533617-6533639:-] 0.5262 120 6 -3.39 -0.2404 MIMAT0011458 cel-miR-2218b* 179045 dre-1 agAGU-GAUGUUUGAUGUUUAaa ||| || | | |||||| uuUCACCUUC--UCCACAAAUau 3 21 13 33 [ce6:V:6533940-6533960:-] 0.4959 124 0 -7.75 -0.1199 MIMAT0011463 cel-miR-2221 179045 dre-1 ugaucGCCAGAC-CAUAGUGAAc || :|| |||||||| uuuucCGCAUUGCUUAUCACUUu 2 18 203 225 [ce6:V:6533748-6533770:-] 0.5262 148 7 -11.09 -1.1113 MIMAT0011463 cel-miR-2221 179045 dre-1 ugaucgccagaccauAGUGAAc |||||| ccacaaauauaucauUCACUUc 2 8 24 45 [ce6:V:6533928-6533949:-] 0.4959 120 6 -5.09 -0.1124 MIMAT0014446 cel-miR-2953-5p 179045 dre-1 uaaaagugcuugugAAGACAu |||||| aauaguuuaauaaaUUCUGUu 2 8 348 368 [ce6:V:6533605-6533625:-] 0.5262 120 6 -6.77 -0.4334 MIMAT0000004 cel-miR-2 179045 dre-1 cguguaGUUUCGACCGACACUAu |||| :| ||||||| aaagugCAAACUUUUCUGUGAUa 2 18 243 265 [ce6:V:6533708-6533730:-] 0.5262 157 7 -14.85 -1.2606 MIMAT0000014 cel-miR-43 179045 dre-1 cgcuguCG-UUCAUUUGACACUAu || || | ||||||| uaaaguGCAAACUUUUCUGUGAUa 2 18 242 265 [ce6:V:6533708-6533731:-] 0.5262 144 7 -13.88 -1.2606 MIMAT0000043 cel-miR-71 179045 dre-1 agUGAUGGGUA------CAGAAAGu ||||||||| ||||||| acACUACCCAUUUCGCAGUCUUUCa 2 18 83 107 [ce6:V:6533866-6533890:-] 0.5262 156 7 -28.07 -1.0842 MIMAT0000043 cel-miR-71 179045 dre-1 agUGAUGGGUACAGAAAGu |: ||:: | |||||| uuAUCACUUUUAUCUUUCa 2 18 216 234 [ce6:V:6533739-6533757:-] 0.5262 125 6 -13.00 -0.1921 MIMAT0000059 cel-miR-86 179045 dre-1 cugacaccGUUUCGUAAGUGAAu :| | ||||||||| uccacaaaUAUAUCAUUCACUUc 2 16 23 45 [ce6:V:6533928-6533950:-] 0.4959 155 7 -11.83 -1.0146 MIMAT0000059 cel-miR-86 179045 dre-1 cugacaccguuucguaAGUGAAu |||||| uuuuccgcauugcuuaUCACUUu 2 8 203 225 [ce6:V:6533748-6533770:-] 0.5262 120 6 -11.58 -0.1048 MIMAT0000290 cel-miR-235 179045 dre-1 aguccggccccUCUCACGUUau | ||||||| ucaaccuuuuuAAAGUGCAAac 3 12 232 253 [ce6:V:6533720-6533741:-] 0.5262 127 0 -9.43 -0.1382 MIMAT0000306 cel-miR-250 179045 dre-1 acgGUUGUCAACUGACACUAa ||| | || ||||||| gugCAA-ACUUUUCUGUGAUa 2 19 246 265 [ce6:V:6533708-6533727:-] 0.5262 152 7 -13.37 -1.2617 MIMAT0004220 cel-miR-785 179045 dre-1 agAUGUGUUU-UGU--UAAGUGAAu | |||||| |:| |||||||| ucUCCACAAAUAUAUCAUUCACUUc 2 21 21 45 [ce6:V:6533928-6533952:-] 0.4959 166 7 -15.94 -1.0088 MIMAT0004220 cel-miR-785 179045 dre-1 agauguguuuuguuaAGUGAAu |||||| uuuccgcauugcuuaUCACUUu 2 8 204 225 [ce6:V:6533748-6533769:-] 0.5262 120 6 -12.07 -0.1069 MIMAT0004232 cel-miR-797 179045 dre-1 agAAGAGUAACAC---U--AACGACACUAu ||:|:| ||| | || ||||||| ccUUUUUAAAGUGCAAACUUUUCUGUGAUa 2 24 236 265 [ce6:V:6533708-6533737:-] 0.5262 153 7 -17.42 -1.2659

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score dre-1 RAID00076057 cel-miR-2-3p miRNA MIMAT0000004 dre-1 mRNA 179045 CLIP-seq//Prediction 0.6478 dre-1 RAID00361029 cel-miR-58a-3p miRNA MIMAT0000030 dre-1 mRNA 179045 Prediction 0.1828 dre-1 RAID00415725 cel-miR-785-3p miRNA MIMAT0004220 dre-1 mRNA 179045 CLIP-seq//Prediction 0.6308 dre-1 RAID00798329 cel-miR-265 miRNA MIMAT0000321 dre-1 mRNA 179045 CLIP-seq 0.5483 dre-1 RAID00844466 cel-miR-235-3p miRNA MIMAT0000290 dre-1 mRNA 179045 CLIP-seq//Prediction 0.6308 dre-1 RAID01131999 cel-miR-43-3p miRNA MIMAT0000014 dre-1 mRNA 179045 CLIP-seq//Prediction 0.6478 dre-1 RAID01397827 cel-miR-797-5p miRNA MIMAT0004232 dre-1 mRNA 179045 CLIP-seq//Prediction 0.6559 dre-1 RAID01662618 cel-miR-82-3p miRNA MIMAT0000055 dre-1 mRNA 179045 Prediction 0.1828 dre-1 RAID01829950 cel-miR-47-3p miRNA MIMAT0000018 dre-1 mRNA 179045 CLIP-seq 0.5483 dre-1 RAID02032491 cel-miR-124-3p miRNA MIMAT0000282 dre-1 mRNA 179045 Prediction 0.1828 dre-1 RAID02755705 cel-miR-86-5p miRNA MIMAT0000059 dre-1 mRNA 179045 CLIP-seq//Prediction 0.6308 dre-1 RAID03286019 cel-miR-71-5p miRNA MIMAT0000043 dre-1 mRNA 179045 CLIP-seq//Prediction 0.6478 dre-1 RAID03827622 cel-miR-250-3p miRNA MIMAT0000306 dre-1 mRNA 179045 CLIP-seq//Prediction 0.6478