DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0015119 cel-miR-247* 172925 duo-3 ccauuaaucuuUGAAAAGAGAu ::|||||||| guauuucccuuGUUUUUCUCUu 2 12 150 171 [ce6:I:10464417-10464438:-] 0.5000 147 7 -9.79 -1.1819 MIMAT0011434 cel-miR-2209c 172925 duo-3 acaucacauuggccacCAGAAAa |||||| aauauacccauuuuuuGUCUUUc 2 8 112 134 [ce6:I:10464454-10464476:-] 0.5000 120 6 -5.36 -0.1120 MIMAT0011451 cel-miR-2217* 172925 duo-3 cuagcUGUGGCUGACGGGUGAGac |||:: | ||||||| auguuACAUUAUAUUCCCACUCaa 3 20 46 69 [ce6:I:10464519-10464542:-] 0.5000 135 0 -16.89 -0.1556 MIMAT0011453 cel-miR-2209b* 172925 duo-3 cuuccUCUUCUCAACAAUGUGa || | | |||||||: uucaaAGUACA-AUGUUACAUu 2 18 35 55 [ce6:I:10464533-10464553:-] 0.5000 131 0 -10.06 -0.1164 MIMAT0000043 cel-miR-71 172925 duo-3 agugAUGGGU-----ACAGAAAGu |||||| |||||||| aauaUACCCAUUUUUUGUCUUUCa 2 16 112 135 [ce6:I:10464453-10464476:-] 0.5000 150 7 -20.22 -1.2558 MIMAT0000291 cel-miR-236 172925 duo-3 ucgcaguAAUGGACUGUCAUAAu || ||| |||||||| caacaguUUCCCU-ACAGUAUUu 2 17 134 155 [ce6:I:10464433-10464454:-] 0.5000 158 7 -14.24 -0.8527 MIMAT0000293 cel-miR-238 172925 duo-3 agacuuaccguAGCCUCAUGUUu || ||||||| uaacuuuaaguUCAAAGUACAAu 2 13 25 47 [ce6:I:10464541-10464563:-] 0.5000 144 7 -8.15 -1.0632 MIMAT0000294 cel-miR-239a 172925 duo-3 ggucAUGGAUACACA----UCAUGUUu || || | || ||||||| guuuUAACUUUAAGUUCAAAGUACAAu 2 20 21 47 [ce6:I:10464541-10464567:-] 0.5000 142 7 -8.73 -1.0683 MIMAT0000295 cel-miR-239b 172925 duo-3 gucaUGAAA-ACA--CAUCAUGUUu ||||| || ||||||| uuuaACUUUAAGUUCAAAGUACAAu 2 19 23 47 [ce6:I:10464541-10464565:-] 0.5000 144 7 -9.35 -1.0632 MIMAT0000300 cel-miR-244 172925 duo-3 guAUGGUGAAACAU---GUUG-GUUUCu |:::|| || || | || ||||| aaUGUUACAUUAUAUUCCCACUCAAAGa 2 23 45 72 [ce6:I:10464516-10464543:-] 0.5000 121 0 -12.04 -1.2062 MIMAT0004227 cel-miR-792 172925 duo-3 agacuuucaACUUCUCUAAAGuu | || ||||||| uauucccacUCAA-AGAUUUCua 3 15 57 78 [ce6:I:10464510-10464531:-] 0.5000 128 0 -6.21 -0.1444

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score duo-3 RAID00764907 cel-miR-236-3p miRNA MIMAT0000291 duo-3 mRNA 172925 Prediction 0.1828 duo-3 RAID01691578 cel-miR-244-5p miRNA MIMAT0000300 duo-3 mRNA 172925 Prediction 0.1828 duo-3 RAID02912379 cel-miR-239b-5p miRNA MIMAT0000295 duo-3 mRNA 172925 Prediction 0.1828 duo-3 RAID03114766 cel-miR-238-3p miRNA MIMAT0000293 duo-3 mRNA 172925 Prediction 0.1828 duo-3 RAID03647043 cel-miR-792-3p miRNA MIMAT0004227 duo-3 mRNA 172925 Prediction 0.1828 duo-3 RAID03776339 cel-miR-239a-5p miRNA MIMAT0000294 duo-3 mRNA 172925 Prediction 0.1828 duo-3 RAID04057530 cel-miR-71-5p miRNA MIMAT0000043 duo-3 mRNA 172925 Prediction 0.1828