DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0015111 cel-miR-124* 174478 eif-3.F ugauuucagugaucccACGUACg |||||| ugacugaauuguuuuuUGCAUGa 2 8 318 340 [ce6:II:9333857-9333879:+] 0.5281 120 6 -13.62 -0.1995 MIMAT0015119 cel-miR-247* 174478 eif-3.F ccauuAAUCUUUGAAAAGAGau ||| |||: |||||| aauucUUA-AAAUAUUUCUCcc 3 18 112 132 [ce6:II:9333651-9333671:+] 0.4954 139 0 -6.47 -0.1098 MIMAT0006772 cel-miR-1830 174478 eif-3.F cggaucuuuugcacUUUGGAGc ||||||| acuuucuaucggauAAACCUCg 2 9 274 295 [ce6:II:9333813-9333834:+] 0.4930 140 7 -17.79 -0.4433 MIMAT0011430 cel-miR-2208b-3p 174478 eif-3.F acUUCACAUGGU-UUUAGACGua | || | |:| |||||| ccAUGUUUUCUAUCUAUCUGCcu 3 21 132 154 [ce6:II:9333671-9333693:+] 0.4954 127 0 -10.59 -0.1554 MIMAT0011435 cel-miR-2210 174478 eif-3.F ggauuuuuaacUAACUAGACGGa || ||||||| ccauguuuucuAUCUAUCUGCCu 2 13 132 154 [ce6:II:9333671-9333693:+] 0.4954 144 7 -12.18 -1.1915 MIMAT0011439 cel-miR-2212 174478 eif-3.F guUUCAGUCGGAUA-CUAGACGGu | ||: :|||| ||||||| ccAUGUU-UUCUAUCUAUCUGCCu 2 22 132 154 [ce6:II:9333671-9333693:+] 0.4954 150 7 -16.11 -1.1915 MIMAT0011463 cel-miR-2221 174478 eif-3.F ugaucgccagACCA-UAGUGAAc || | ||||||| agguuucugaUGAUGAUCACUUu 2 13 256 278 [ce6:II:9333795-9333817:+] 0.4942 143 7 -11.45 -0.4294 MIMAT0000004 cel-miR-2 174478 eif-3.F cguguAGUUUCGACCGAC-ACUAu |::||| | ||| |||| aauguUUGAAGGUUUCUGAUGAUg 2 19 247 270 [ce6:II:9333786-9333809:+] 0.4942 122 0 -11.17 -0.6947 MIMAT0000049 cel-miR-77 174478 eif-3.F accugucgauaccGGACUACUu :||||||| auguuugaagguuUCUGAUGAu 2 10 248 269 [ce6:II:9333787-9333808:+] 0.4942 141 7 -12.37 -0.8800 MIMAT0000282 cel-miR-124 174478 eif-3.F accguaaguggcgcACGGAAu |||||| guuuucuaucuaucUGCCUUu 2 8 136 156 [ce6:II:9333675-9333695:+] 0.4954 120 6 -9.77 -0.2364 MIMAT0000285 cel-miR-230 174478 eif-3.F agaggaccagcguguuGAUUAUg |||||| uuugucccgauuuuuuCUAAUAu 2 8 29 51 [ce6:II:9333568-9333590:+] 0.4954 120 6 -8.70 -0.2063 MIMAT0000310 cel-miR-254 174478 eif-3.F ggAUGUCAGCGCUUUCUAAACgu || |: : | |||||| uuUAGCCUUCUUAUUGAUUUGgu 3 22 210 232 [ce6:II:9333749-9333771:+] 0.4954 121 0 -7.13 -0.1177 MIMAT0004232 cel-miR-797 174478 eif-3.F agaagaguAAC-ACUAACGAC-ACUAu ||| |:|| ||| |||| aucaauguUUGAAGGUUUCUGAUGAUg 2 18 244 270 [ce6:II:9333783-9333809:+] 0.4942 120 0 -13.40 -0.7022

DNA & RNA Element - miRNAMap Gene Name Mature miRNA Target Start Target End miRNA 3-5 Alignment Target 5-3 eif-3.F; D2013.7 cel-miR-236 168 189 UCGCAGUAAUGGACU---GUCAUAAU |||::|||| :|||||| -----GAUUGUCUGAAAUUAGUAUUU eif-3.F; D2013.7 cel-miR-241 122 157 AGUAAAGAGCG--------------UGGAUGGAGU :||||||| | |:||:|||: AUAUUUCUCCCCAUGUUUUCUAUCUAUCUGCCUUU eif-3.F; D2013.7 cel-miR-249 245 270 CCGUUGCGAGUUUUCA-GGAC-ACU- |||:|:|::||:|| :||| ||| -UCAAUGUUUGAAGGUUUCUGAUGAU eif-3.F; D2013.7 cel-miR-265 95 113 -UAUGGUGGGAAGGAGGGAGU |||:||:|||||:||| UAUAUCAUCCUUCUUCCA--- eif-3.F; D2013.7 cel-miR-270 88 106 GAGGUGACGAUGUAGUACGG- ||||:| ||:||||| || AUCCAUU--UAUAUCAU-CCU eif-3.F; D2013.7 cel-miR-357 51 75 -UGAGGACGUUGCUGACCGUAAAU- |:|::| :|::||||:|||: UAUUUUUUUU-UGGUUGGCGUUUGU eif-3.F; D2013.7 cel-miR-38 8 39 UGAGGU------------CAAAAAGAGGGCCACU ||||| |||||| ||||| UCUCCACACUAUAAACUCGUUUUUGUCCCGA--- eif-3.F; D2013.7 cel-miR-77 256 270 ACCUGUCGAUACCG--GACUACUU ||: ||||||| ----------AGGUUUCUGAUGAU eif-3.F; D2013.7 cel-miR-793 274 297 AGACAGAUUGAUUCUA--UGGAGU- || |||| :||| |||||: ACUUUCUAUC--GGAUAAACCUCGU eif-3.F; D2013.7 cel-miR-795 135 157 UUCGAGCGACUAGUUAGAUGGAGU |:|: || ||| ||||:|||: -UGUUUUCU-AUCUAUCUGCCUUU eif-3.F; D2013.7 cel-miR-80 256 275 AGCCGAAAGUUGAUUACUAGAGU ||:| || |:|||||| -AGGUU-UCUGAUGAUGAUCA-- eif-3.F; D2013.7 cel-miR-81 255 275 UGAUCGAAAG--UGCUACUAGAGU || |||| |:||||||| --AAGGUUUCUGAUGAUGAUCA-- eif-3.F; D2013.7 cel-miR-82 256 275 UGACCGAA-AGUGCUACUAGAGU ||:|| | |:||||||| --AGGUUUCUGAUGAUGAUCA-- eif-3.F; D2013.7 cel-miR-236 163 188 ucgcagUAAUGGACU---GUCAUAAu |||::|||| :|||||| taatggATTGTCTGAAATTAGTATTt eif-3.F; D2013.7 cel-miR-241 135 156 aguAAAGAGCG-UGGAUGGAgu ||||| | |:||:||| tgtTTTCTATCTATCTGCCTtt eif-3.F; D2013.7 cel-miR-249 244 268 ccGUUGCGAGUUUUC-AGGAC-ACU |||:|:|::||:| |:||| ||| atCAATGTTTGAAGGTTTCTGATGA eif-3.F; D2013.7 cel-miR-265 96 114 UAUGGUGGGAAGGAGGGagu |||:||:|||| ||:|| ATATCATCCTT-CTTCCaat eif-3.F; D2013.7 cel-miR-38 22 41 UGAGGUCAAAAAGAGGGCCAcu |||| |||||| ||||| | ACTC--GTTTTTGTCCCGATtt eif-3.F; D2013.7 cel-miR-795 134 156 UUCGAGCGACUAGUUAGAUGGAgu | |:|: || ||| ||||:||| ATGTTTTCT-ATCTATCTGCCTtt eif-3.F; D2013.7 cel-miR-80 255 276 agCCGAAAGUUGAUUACUAGAGu || |||| : |:|||||| | aaGG-TTTCTGATGATGATCACt eif-3.F; D2013.7 cel-miR-81 253 276 ugaUCGAAAG--UGCUACUAGAGu || |||| |:||||||| | tgaAGGTTTCTGATGATGATCACt eif-3.F; D2013.7 cel-miR-82 254 276 ugaCCGAA-AGUGCUACUAGAGu ||:|| | |:||||||| | gaaGGTTTCTGATGATGATCACt eif-3.F; D2013.7 cel-miR-77 262 269 AC-------------------------CUGUCGAUACCGGACUACUU || :|:| :||||||| UUUGGUUUUAAAGAAAAAUCAAUGUUUGAAGGUU----UCUGAUGAU

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score eif-3.F RAID00823581 cel-miR-254-3p miRNA MIMAT0000310 eif-3.F mRNA 174478 Prediction 0.1828 eif-3.F RAID02693790 cel-miR-2-3p miRNA MIMAT0000004 eif-3.F mRNA 174478 CLIP-seq//Prediction 0.6308 eif-3.F RAID03201212 cel-miR-124-3p miRNA MIMAT0000282 eif-3.F mRNA 174478 Prediction 0.1828 eif-3.F RAID03209382 cel-miR-797-5p miRNA MIMAT0004232 eif-3.F mRNA 174478 CLIP-seq//Prediction 0.6308 eif-3.F RAID03558663 cel-miR-77-3p miRNA MIMAT0000049 eif-3.F mRNA 174478 CLIP-seq//Prediction 0.6308 eif-3.F RAID04060170 cel-miR-230-3p miRNA MIMAT0000285 eif-3.F mRNA 174478 CLIP-seq//Prediction 0.6308