DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0015096 cel-miR-46* 174002 frh-1 gacaguuaucugccGAGAGAa |||||| augugauuucuauuCUCUCUc 2 8 16 36 [ce6:II:5918111-5918131:+] 0.7062 120 6 -10.07 -0.3512 MIMAT0015096 cel-miR-46* 174002 frh-1 gacaguuaucugccGAGAGAa |||||| augugauuucuauuCUCUCUc 2 8 16 36 [ce6:II:5918111-5918131:+] 0.7062 120 6 -10.07 -0.3536 MIMAT0015097 cel-miR-47* 174002 frh-1 ugacaguuaucugacGAGAGAa |||||| caugugauuucuauuCUCUCUc 2 8 15 36 [ce6:II:5918110-5918131:+] 0.7062 120 6 -11.01 -0.3512 MIMAT0015097 cel-miR-47* 174002 frh-1 ugacaguuaucugacGAGAGAa |||||| caugugauuucuauuCUCUCUc 2 8 15 36 [ce6:II:5918110-5918131:+] 0.7062 120 6 -11.01 -0.3536 MIMAT0015119 cel-miR-247* 174002 frh-1 ccauuaaucuUUGAAAAGAGAu :|:|||||||| auucucucucGAUUUUUCUCUu 2 13 27 48 [ce6:II:5918122-5918143:+] 0.7062 152 7 -11.28 -1.3111 MIMAT0015119 cel-miR-247* 174002 frh-1 ccAUUA-AUCUUUGAAAAGAGau |:|| || | ||||||| uuUGAUGUAUCAUGUUUUCUCau 3 21 60 82 [ce6:II:5918155-5918177:+] 0.7062 135 0 -7.38 -0.1785 MIMAT0015119 cel-miR-247* 174002 frh-1 ccauuaaucuuugaaAAGAGAu |||||| aucaugugauuucuaUUCUCUc 2 8 13 34 [ce6:II:5918108-5918129:+] 0.7062 120 6 -10.80 -0.1279 MIMAT0015119 cel-miR-247* 174002 frh-1 ccauuaaucuUUGAAAAGAGAu :|:|||||||| auucucucucGAUUUUUCUCUu 2 13 27 48 [ce6:II:5918122-5918143:+] 0.7062 152 7 -11.28 -1.3116 MIMAT0015119 cel-miR-247* 174002 frh-1 ccAUUA-AUCUUUGAAAAGAGau |:|| || | ||||||| uuUGAUGUAUCAUGUUUUCUCau 3 21 60 82 [ce6:II:5918155-5918177:+] 0.7062 135 0 -7.38 -0.1800 MIMAT0015119 cel-miR-247* 174002 frh-1 ccauuaaucuuugaaAAGAGAu |||||| aucaugugauuucuaUUCUCUc 2 8 13 34 [ce6:II:5918108-5918129:+] 0.7062 120 6 -10.80 -0.1290 MIMAT0000321 cel-miR-265 174002 frh-1 uaugguGGGAAGGAGGGAGu :|: |:|||:||| gugauuUCUAUUCUCUCUCg 2 15 18 37 [ce6:II:5918113-5918132:+] 0.7062 134 0 -17.82 -0.2953 MIMAT0000321 cel-miR-265 174002 frh-1 uaugguGGGAAGGAGGGAGu :|: |:|||:||| gugauuUCUAUUCUCUCUCg 2 15 18 37 [ce6:II:5918113-5918132:+] 0.7062 134 0 -17.82 -0.2974 MIMAT0000322 cel-miR-266 174002 frh-1 cgAAACGGUUUC----AGAACGGa | || :|||| ||||||| uuUCUGGUAAAGUUUUUCUUGCCc 2 19 117 140 [ce6:II:5918212-5918235:+] 0.5004 149 7 -15.30 -1.0930 MIMAT0000322 cel-miR-266 174002 frh-1 cgAAACGGUUUCAGAACGga ||| :| |||||| uuUUUCUCUUUUUCUUGCau 3 19 39 58 [ce6:II:5918134-5918153:+] 0.7062 126 0 -9.09 -0.3791 MIMAT0000322 cel-miR-266 174002 frh-1 cgAAACGGUUUC----AGAACGGa | || :|||| ||||||| uuUCUGGUAAAGUUUUUCUUGCCc 2 19 117 140 [ce6:II:5918212-5918235:+] 0.5004 149 7 -15.30 -1.0866 MIMAT0000322 cel-miR-266 174002 frh-1 cgAAACGGUUUCAGAACGga ||| :| |||||| uuUUUCUCUUUUUCUUGCau 3 19 39 58 [ce6:II:5918134-5918153:+] 0.7062 126 0 -9.09 -0.3817 MIMAT0000324 cel-miR-268 174002 frh-1 ugGUUUGACGAAGAUUAAGAACGg |:| :| : ||| ||||||| cuCGAUUUUUCUCUUUUUCUUGCa 2 23 34 57 [ce6:II:5918129-5918152:+] 0.7062 158 7 -14.75 -1.3380 MIMAT0000324 cel-miR-268 174002 frh-1 ugguuugacgaagauuAAGAACGg ||||||| uuuucugguaaaguuuUUCUUGCc 2 9 116 139 [ce6:II:5918211-5918234:+] 0.5004 140 7 -15.48 -0.9280 MIMAT0000324 cel-miR-268 174002 frh-1 ugGUUUGACGAAGAUUAAGAACGg |:| :| : ||| ||||||| cuCGAUUUUUCUCUUUUUCUUGCa 2 23 34 57 [ce6:II:5918129-5918152:+] 0.7062 158 7 -14.75 -1.3383 MIMAT0000324 cel-miR-268 174002 frh-1 ugguuugacgaagauuAAGAACGg ||||||| uuuucugguaaaguuuUUCUUGCc 2 9 116 139 [ce6:II:5918211-5918234:+] 0.5004 140 7 -15.48 -0.9146 MIMAT0000325 cel-miR-269 174002 frh-1 ucAAAACGGUCUCAGAACGg |||| :| |||||| auUUUUCUCUUUUUCUUGCa 2 19 38 57 [ce6:II:5918133-5918152:+] 0.7062 122 6 -8.71 -0.6397 MIMAT0000325 cel-miR-269 174002 frh-1 ucAAAACGGUCUCAGAACGg |||| :| |||||| auUUUUCUCUUUUUCUUGCa 2 19 38 57 [ce6:II:5918133-5918152:+] 0.7062 122 6 -8.71 -0.6428 MIMAT0000326 cel-miR-270 174002 frh-1 gagguGACGAUGUAGUACGg :|| |::||||||: cauauUUGAUGUAUCAUGUu 2 16 56 75 [ce6:II:5918151-5918170:+] 0.7062 139 0 -12.66 -0.2640 MIMAT0000326 cel-miR-270 174002 frh-1 gaggUGACGAUGUAGUACGg |:| | |:||||||: ccggAUUUC-AUAUCAUGUg 2 17 2 20 [ce6:II:5918097-5918115:+] 0.7062 134 0 -10.92 -0.1163 MIMAT0000326 cel-miR-270 174002 frh-1 gagguGACGAUGUAGUACGg :|| |::||||||: cauauUUGAUGUAUCAUGUu 2 16 56 75 [ce6:II:5918151-5918170:+] 0.7062 139 0 -12.66 -0.2659 MIMAT0000326 cel-miR-270 174002 frh-1 gaggUGACGAUGUAGUACGg |:| | |:||||||: ccggAUUUC-AUAUCAUGUg 2 17 2 20 [ce6:II:5918097-5918115:+] 0.7062 134 0 -10.92 -0.1537 MIMAT0015241 cel-miR-797* 174002 frh-1 uaAAGUGUCUUUGGUUACUUUu ||:|:| : ::||||||| uuUUUAUA-CGUUUAAUGAAAa 2 21 147 167 [ce6:II:5918242-5918262:+] 0.5004 150 7 -11.67 -1.1789 MIMAT0015241 cel-miR-797* 174002 frh-1 uaAAGUGUCUUUGGUUACUUUu ||:|:| : ::||||||| uuUUUAUA-CGUUUAAUGAAAa 2 21 147 167 [ce6:II:5918242-5918262:+] 0.5004 150 7 -11.67 -0.9725 MIMAT0005031 cel-miR-1018 174002 frh-1 gaCAUUCAGGUUACUAGAGAGa ||:| |:| || |||||| auGUGAUUUCUAUUCUCUCUCg 2 21 16 37 [ce6:II:5918111-5918132:+] 0.7062 136 6 -16.29 -0.7517 MIMAT0005031 cel-miR-1018 174002 frh-1 gacauuCAGGUUACUAGAGAga || || |||||| gaaacuGUGGAAAAAUCUCUga 3 17 169 190 [ce6:II:5918264-5918285:+] 0.5004 128 0 -11.21 -0.2134 MIMAT0005031 cel-miR-1018 174002 frh-1 gaCAUUCAGGUUACUAGAGAGa ||:| |:| || |||||| auGUGAUUUCUAUUCUCUCUCg 2 21 16 37 [ce6:II:5918111-5918132:+] 0.7062 136 6 -16.29 -0.7549 MIMAT0011448 cel-miR-2216* 174002 frh-1 uccGUGUAAAAUUCAUCUAUc :|:|| ||: |||||| aguUAUAUAUUGUCUAGAUAc 2 19 95 115 [ce6:II:5918190-5918210:+] 0.5004 130 6 -8.87 -0.1074 MIMAT0011448 cel-miR-2216* 174002 frh-1 uccGUGUAAAAUUCAUCUAUc :|:|| ||: |||||| aguUAUAUAUUGUCUAGAUAc 2 19 95 115 [ce6:II:5918190-5918210:+] 0.5004 130 6 -8.87 -0.1047 MIMAT0000004 cel-miR-2 174002 frh-1 cguguaguuucgaccgACACUAu |||||| uccggauuucauaucaUGUGAUu 2 8 1 23 [ce6:II:5918096-5918118:+] 0.7896 120 6 -12.92 -0.2873 MIMAT0000004 cel-miR-2 174002 frh-1 cguguaguuucgaccgACACUAu |||||| uccggauuucauaucaUGUGAUu 2 8 1 23 [ce6:II:5918096-5918118:+] 0.7896 120 6 -12.92 -0.3247 MIMAT0000014 cel-miR-43 174002 frh-1 cgcugucguucauuugACACUAu |||||| uccggauuucauaucaUGUGAUu 2 8 1 23 [ce6:II:5918096-5918118:+] 0.7896 120 6 -10.29 -0.2898 MIMAT0000014 cel-miR-43 174002 frh-1 cgcugucguucauuugACACUAu |||||| uccggauuucauaucaUGUGAUu 2 8 1 23 [ce6:II:5918096-5918118:+] 0.7896 120 6 -10.29 -0.3274 MIMAT0000021 cel-miR-50 174002 frh-1 ggguucuuauggucuGUAUAGu |||||| ------uccggauuuCAUAUCa 2 8 1 16 [ce6:II:5918096-5918111:+] 0.7896 120 6 -14.25 -0.4200 MIMAT0000021 cel-miR-50 174002 frh-1 ggguucuuauggucuGUAUAGu |||||| ------uccggauuuCAUAUCa 2 8 1 16 [ce6:II:5918096-5918111:+] 0.7896 120 6 -14.25 -0.4983 MIMAT0000034 cel-miR-62 174002 frh-1 gacauucGAUCUAAUGUAUAGu | :|||| |||||| ------uCCGGAUUUCAUAUCa 2 16 1 16 [ce6:II:5918096-5918111:+] 0.7896 131 6 -13.57 -0.4169 MIMAT0000034 cel-miR-62 174002 frh-1 gacauucGAUCUAAUGUAUAGu | :|||| |||||| ------uCCGGAUUUCAUAUCa 2 16 1 16 [ce6:II:5918096-5918111:+] 0.7896 131 6 -13.57 -0.4949 MIMAT0000035 cel-miR-63 174002 frh-1 aaAGGUUGAGCGAAGU-CACAGUAu ||: :| : :|| | || |||| uuUCUUGCAUAUUUGAUGUAUCAUg 2 23 49 73 [ce6:II:5918144-5918168:+] 0.7062 121 0 -9.49 -0.1131 MIMAT0000035 cel-miR-63 174002 frh-1 aaAGGUUGAGCGAAGU-CACAGUAu ||: :| : :|| | || |||| uuUCUUGCAUAUUUGAUGUAUCAUg 2 23 49 73 [ce6:II:5918144-5918168:+] 0.7062 121 0 -9.49 -0.1140 MIMAT0000038 cel-miR-66 174002 frh-1 agUGUAGGGAUUAGUCACAGUAc :||| ::|:|| || |||| uuGCAUAUUUGAU--GUAUCAUg 2 22 53 73 [ce6:II:5918148-5918168:+] 0.7062 126 0 -12.53 -0.1068 MIMAT0000038 cel-miR-66 174002 frh-1 agUGUAGGGAUUAGUCACAGUAc :||| ::|:|| || |||| uuGCAUAUUUGAU--GUAUCAUg 2 22 53 73 [ce6:II:5918148-5918168:+] 0.7062 126 0 -12.53 -0.1077 MIMAT0000044 cel-miR-72 174002 frh-1 agucgauacgguuguAGAACGGa ||||||| uucugguaaaguuuuUCUUGCCc 2 9 118 140 [ce6:II:5918213-5918235:+] 0.5004 140 7 -13.46 -1.0906 MIMAT0000044 cel-miR-72 174002 frh-1 agUCGAUACGGUUGUAGAACGga | :| | :| : |||||| cgAUUUUUCUCUUUUUCUUGCau 3 22 36 58 [ce6:II:5918131-5918153:+] 0.7062 125 0 -8.35 -0.3821 MIMAT0000044 cel-miR-72 174002 frh-1 agucgauacgguuguAGAACGGa ||||||| uucugguaaaguuuuUCUUGCCc 2 9 118 140 [ce6:II:5918213-5918235:+] 0.5004 140 7 -13.46 -1.0842 MIMAT0000044 cel-miR-72 174002 frh-1 agUCGAUACGGUUGUAGAACGga | :| | :| : |||||| cgAUUUUUCUCUUUUUCUUGCau 3 22 36 58 [ce6:II:5918131-5918153:+] 0.7062 125 0 -8.35 -0.3847 MIMAT0000045 cel-miR-73 174002 frh-1 ugacuugacggauguAGAACGGu ||||||| uucugguaaaguuuuUCUUGCCc 2 9 118 140 [ce6:II:5918213-5918235:+] 0.5004 140 7 -16.82 -1.0906 MIMAT0000045 cel-miR-73 174002 frh-1 ugacuuGACGGAUGUAGAACGgu :| :|| : |||||| cgauuuUUCUCUUUUUCUUGCau 3 18 36 58 [ce6:II:5918131-5918153:+] 0.7062 129 0 -10.70 -0.3791 MIMAT0000045 cel-miR-73 174002 frh-1 ugacuugacggauguAGAACGGu ||||||| uucugguaaaguuuuUCUUGCCc 2 9 118 140 [ce6:II:5918213-5918235:+] 0.5004 140 7 -16.82 -1.0842 MIMAT0000045 cel-miR-73 174002 frh-1 ugacuuGACGGAUGUAGAACGgu :| :|| : |||||| cgauuuUUCUCUUUUUCUUGCau 3 18 36 58 [ce6:II:5918131-5918153:+] 0.7062 129 0 -10.70 -0.3817 MIMAT0000046 cel-miR-74 174002 frh-1 acaucugacgguAAAGAACGGu ||||||||| ucugguaaaguuUUUCUUGCCc 2 11 119 140 [ce6:II:5918214-5918235:+] 0.5004 150 7 -15.32 -1.0906 MIMAT0000046 cel-miR-74 174002 frh-1 acaucuGACGGUAAAGAACGgu || |: |||||||| auuuuuCU-CUUUUUCUUGCau 3 17 38 58 [ce6:II:5918133-5918153:+] 0.7062 134 0 -11.54 -0.3821 MIMAT0000046 cel-miR-74 174002 frh-1 acaucugacgguAAAGAACGGu ||||||||| ucugguaaaguuUUUCUUGCCc 2 11 119 140 [ce6:II:5918214-5918235:+] 0.5004 150 7 -15.32 -1.0842 MIMAT0000046 cel-miR-74 174002 frh-1 acaucuGACGGUAAAGAACGgu || |: |||||||| auuuuuCU-CUUUUUCUUGCau 3 17 38 58 [ce6:II:5918133-5918153:+] 0.7062 134 0 -11.54 -0.3847 MIMAT0000061 cel-miR-90 174002 frh-1 uccccguaaguuuguuGUAUAGu |||||| -------uccggauuuCAUAUCa 2 8 1 16 [ce6:II:5918096-5918111:+] 0.7896 120 6 -12.92 -0.4137 MIMAT0000061 cel-miR-90 174002 frh-1 uccccguaaguuuguuGUAUAGu |||||| -------uccggauuuCAUAUCa 2 8 1 16 [ce6:II:5918096-5918111:+] 0.7896 120 6 -12.92 -0.4914 MIMAT0000302 cel-miR-246 174002 frh-1 cgaggaugggcuuuGUACAUu |||||| guaucauguuuucuCAUGUAu 2 8 66 86 [ce6:II:5918161-5918181:+] 0.7062 120 6 -8.39 -0.2012 MIMAT0000302 cel-miR-246 174002 frh-1 cgaggaugggcuuuGUACAUu |||||| guaucauguuuucuCAUGUAu 2 8 66 86 [ce6:II:5918161-5918181:+] 0.7062 120 6 -8.39 -0.2028 MIMAT0000306 cel-miR-250 174002 frh-1 acgguugucaacugACACUAa |||||| cggauuucauaucaUGUGAUu 2 8 3 23 [ce6:II:5918098-5918118:+] 0.7062 120 6 -9.24 -0.1906 MIMAT0000306 cel-miR-250 174002 frh-1 acgguugucaacugACACUAa |||||| cggauuucauaucaUGUGAUu 2 8 3 23 [ce6:II:5918098-5918118:+] 0.7062 120 6 -9.24 -0.2179 MIMAT0004227 cel-miR-792 174002 frh-1 agacuuucaacuucUCUAAAGUu :||||||| -----------uccGGAUUUCAu 2 10 1 12 [ce6:II:5918096-5918107:+] 0.7896 141 7 -6.67 -1.2498 MIMAT0004227 cel-miR-792 174002 frh-1 agacuuucaACUUCUCUAAAGuu | | | |||||| gauuucauaUCAUGUGAUUUCua 3 15 5 27 [ce6:II:5918100-5918122:+] 0.7062 126 0 -5.26 -0.2328 MIMAT0004227 cel-miR-792 174002 frh-1 agacuuucaacuucUCUAAAGUu :||||||| -----------uccGGAUUUCAu 2 10 1 12 [ce6:II:5918096-5918107:+] 0.7896 141 7 -6.67 -1.2721 MIMAT0004227 cel-miR-792 174002 frh-1 agacuuucaACUUCUCUAAAGuu | | | |||||| gauuucauaUCAUGUGAUUUCua 3 15 5 27 [ce6:II:5918100-5918122:+] 0.7062 126 0 -5.26 -0.2440 MIMAT0004232 cel-miR-797 174002 frh-1 agaagaguaacacuaacgACACUAu |||||| --uccggauuucauaucaUGUGAUu 2 8 1 23 [ce6:II:5918096-5918118:+] 0.7896 120 6 -10.87 -0.2898 MIMAT0004232 cel-miR-797 174002 frh-1 agaagaguaacacuaacgACACUAu |||||| --uccggauuucauaucaUGUGAUu 2 8 1 23 [ce6:II:5918096-5918118:+] 0.7896 120 6 -10.87 -0.3274

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score frh-1 RAID00419597 cel-miR-66-5p miRNA MIMAT0000038 frh-1 mRNA 174002 Prediction 0.1828 frh-1 RAID00705771 cel-miR-43-3p miRNA MIMAT0000014 frh-1 mRNA 174002 Prediction 0.1828 frh-1 RAID00752365 cel-miR-73-3p miRNA MIMAT0000045 frh-1 mRNA 174002 Prediction 0.2202 frh-1 RAID00951916 cel-miR-797-5p miRNA MIMAT0004232 frh-1 mRNA 174002 Prediction 0.2202 frh-1 RAID01819288 cel-miR-50-5p miRNA MIMAT0000021 frh-1 mRNA 174002 Prediction 0.2202 frh-1 RAID01992362 cel-miR-72-5p miRNA MIMAT0000044 frh-1 mRNA 174002 Prediction 0.2202 frh-1 RAID02218722 cel-miR-269 miRNA MIMAT0000325 frh-1 mRNA 174002 Prediction 0.1828 frh-1 RAID02234968 cel-miR-90-3p miRNA MIMAT0000061 frh-1 mRNA 174002 Prediction 0.2381 frh-1 RAID02423239 cel-miR-792-3p miRNA MIMAT0004227 frh-1 mRNA 174002 Prediction 0.1828 frh-1 RAID02472177 cel-miR-246-3p miRNA MIMAT0000302 frh-1 mRNA 174002 Prediction 0.1828 frh-1 RAID02522435 cel-miR-62 miRNA MIMAT0000034 frh-1 mRNA 174002 Prediction 0.2202 frh-1 RAID02578827 cel-miR-63-3p miRNA MIMAT0000035 frh-1 mRNA 174002 Prediction 0.1828 frh-1 RAID02781661 cel-miR-268 miRNA MIMAT0000324 frh-1 mRNA 174002 Prediction 0.1828 frh-1 RAID03368073 cel-miR-250-3p miRNA MIMAT0000306 frh-1 mRNA 174002 Prediction 0.2202 frh-1 RAID03697316 cel-miR-2-3p miRNA MIMAT0000004 frh-1 mRNA 174002 Prediction 0.1828 frh-1 RAID03898965 cel-miR-266 miRNA MIMAT0000322 frh-1 mRNA 174002 Prediction 0.1828 frh-1 RAID04000941 cel-miR-74-3p miRNA MIMAT0000046 frh-1 mRNA 174002 Prediction 0.2202