DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0015094 cel-miR-37* 174803 gpb-1 cguGGCGUUGCCUGUGGGUgu || ||| ||||||| uuuCCCCAA--AACACCCAaa 3 19 1076 1094 [ce6:II:11742801-11742819:-] 0.5787 131 0 -16.89 -0.2241 MIMAT0015095 cel-miR-42* 174803 gpb-1 gaaguggcuuuuucgUUUGUGGGUg ||||||||| cucuucuuuuccccaAAACACCCAa 2 11 1069 1093 [ce6:II:11742802-11742826:-] 0.5787 150 7 -18.58 -1.2445 MIMAT0015096 cel-miR-46* 174803 gpb-1 gacaGU-UAUCUGC-CGAGAGAa || ||: :|| ||||||| cauaCACAUGCGCGCGCUCUCUu 2 18 437 459 [ce6:II:11743436-11743458:-] 0.5065 151 7 -18.72 -0.1572 MIMAT0015097 cel-miR-47* 174803 gpb-1 ugacaGU-UAUCUG-ACGAGAGAa || ||: :| ||||||| acauaCACAUGCGCGCGCUCUCUu 2 18 436 459 [ce6:II:11743436-11743459:-] 0.5065 143 7 -14.18 -0.1572 MIMAT0015099 cel-miR-51* 174803 gpb-1 acGUGGACA-UGGACGAAG-GUAc | :|| | |||| |||| ||| uuCUUCUCUCACCU-CUUCUCAUc 2 21 183 205 [ce6:II:11743690-11743712:-] 0.5065 121 0 -12.59 -0.3331 MIMAT0015114 cel-miR-238* 174803 gpb-1 cgaaacuugcaggcuCUUGUAGGu |||||||| caauucuugaaaaauGAACAUCCc 2 10 1033 1056 [ce6:II:11742839-11742862:-] 0.5787 145 7 -14.63 -0.3790 MIMAT0015119 cel-miR-247* 174803 gpb-1 ccauuaaucuuuGAAAAGAGAu :|||||||| uuuaagcuucuuUUUUUCUCUa 2 11 700 721 [ce6:II:11743174-11743195:-] 0.5787 146 7 -10.91 -1.2774 MIMAT0015119 cel-miR-247* 174803 gpb-1 ccauuaaucuuugaaAAGAGAu |||||| auuucugguaucaucUUCUCUc 2 8 721 742 [ce6:II:11743153-11743174:-] 0.5787 120 6 -8.40 -0.1209 MIMAT0000327 cel-miR-271 174803 gpb-1 uuaCGAAAG--GGU-GGGCCGCu ||| || |:| ||||||| gucGCUAUCCGCUAUCCCGGCGc 2 18 134 156 [ce6:II:11743739-11743761:-] 0.5065 151 7 -24.92 -0.1700 MIMAT0000329 cel-miR-273 174803 gpb-1 guCGGCUG-UGUCAUGC-CCGu | :||: ||| |||| ||| auGAUGAUGACACUACGUGGCa 2 19 46 67 [ce6:II:11743828-11743849:-] 0.5065 121 0 -20.09 -1.1015 MIMAT0000695 cel-miR-353 174803 gpb-1 uuAUGGUUGUGUACCGUUAAc |: || :||:|||||||| gaUGACACUACGUGGCAAUUu 2 20 51 71 [ce6:II:11743824-11743844:-] 0.5065 167 7 -19.35 -0.7871 MIMAT0000695 cel-miR-353 174803 gpb-1 uuaUGGUUGU-GUACCGUUAAc |::| :| :|| |||||| aaaAUUAUUAUUAUAGCAAUUc 2 19 307 328 [ce6:II:11743567-11743588:-] 0.5065 125 6 -6.41 -0.1046 MIMAT0015239 cel-miR-786* 174803 gpb-1 cauuUAUGG-GGUUG-ACUAUAAGc || |: |:||| |||||||| ucguAUUCUACUAACAUGAUAUUCa 2 20 471 495 [ce6:II:11743400-11743424:-] 0.5065 161 7 -14.88 -1.0770 MIMAT0005522 cel-miR-1021 174803 gpb-1 ggcuccUAAAGUGUACUAGA-GUGAa ||||| |:| ||| |||| ucucucAUUUCUCGUCUUCUACACUa 2 20 737 762 [ce6:II:11743133-11743158:-] 0.5787 131 0 -13.36 -1.1708 MIMAT0011427 cel-miR-2208a 174803 gpb-1 ccuauagucuaagcccAUGUGAa |||||| cucauuucucgucuucUACACUa 2 8 740 762 [ce6:II:11743133-11743155:-] 0.5787 120 6 -7.49 -0.1580 MIMAT0011429 cel-miR-2208b-5p 174803 gpb-1 ccuauagucuaggcccAUGUGAa |||||| cucauuucucgucuucUACACUa 2 8 740 762 [ce6:II:11743133-11743155:-] 0.5787 120 6 -9.66 -0.1565 MIMAT0011431 cel-miR-2209a* 174803 gpb-1 cuuccucuucucaccaAUGUGAg |||||| cucauuucucgucuucUACACUa 2 8 740 762 [ce6:II:11743133-11743155:-] 0.5787 120 6 -6.57 -0.1595 MIMAT0011433 cel-miR-2209c* 174803 gpb-1 uuuguucugcacgccaAUGUGAg |||||| cucauuucucgucuucUACACUa 2 8 740 762 [ce6:II:11743133-11743155:-] 0.5787 120 6 -9.25 -0.1535 MIMAT0011437 cel-miR-2211* 174803 gpb-1 gcagUCUACCUCUUAUCUACCUCc |||| | |:| ||||||| agcaAGAUAUACAGU-GAUGGAGc 2 21 546 568 [ce6:II:11743327-11743349:-] 0.5628 158 7 -14.26 -0.1864 MIMAT0011440 cel-miR-2212* 174803 gpb-1 cuaccgaauaGUUUACGGUGAa :|: ||||||| uuuauucggaUAGCUGCCACUu 2 13 962 983 [ce6:II:11742912-11742933:-] 0.5787 144 7 -14.68 -0.4257 MIMAT0011447 cel-miR-2216 174803 gpb-1 cggauggcUGAAUUUUACAcg || | |||||| -----gaaACAUCAAAUGUcu 3 14 1 16 [ce6:II:11743879-11743894:-] 0.6308 129 0 -3.78 -0.1496 MIMAT0011451 cel-miR-2217* 174803 gpb-1 cuAGCUGUGGCUGACGGGUG-AGAc || | :| || ||||| ||| ucUCCCCCUCAACCCCCCACAUCUg 2 23 996 1020 [ce6:II:11742875-11742899:-] 0.5787 122 0 -19.00 -0.6375 MIMAT0011458 cel-miR-2218b* 174803 gpb-1 agagugAUGUUUGAUGUUUAAa ||:: | ||||||| uauauaUAUGUAAGACAAAUUu 2 17 514 535 [ce6:II:11743360-11743381:-] 0.5468 148 7 -7.85 -0.4679 MIMAT0011463 cel-miR-2221 174803 gpb-1 ugaucgccAGACCAUAGU-GAAc |||||||||| ||| ucucuauuUCUGGUAUCAUCUUc 2 15 716 738 [ce6:II:11743157-11743179:-] 0.5787 134 0 -17.75 -0.9518 MIMAT0000015 cel-miR-44 174803 gpb-1 ucgacuuacacAGAGAUCAGu |:||||||| uuguucgguacUUUCUAGUCu 2 11 211 231 [ce6:II:11743664-11743684:-] 0.5065 146 7 -12.90 -0.5888 MIMAT0000016 cel-miR-45 174803 gpb-1 ucgacuuacacAGAGAUCAGu |:||||||| uuguucgguacUUUCUAGUCu 2 11 211 231 [ce6:II:11743664-11743684:-] 0.5065 146 7 -12.90 -0.5888 MIMAT0000033 cel-miR-61 174803 gpb-1 cuACUCAUUGCCAAGAUCAGu | :||| : |||||||| guUCGGUACU--UUCUAGUCu 2 20 213 231 [ce6:II:11743664-11743682:-] 0.5065 148 7 -14.98 -0.5815 MIMAT0000058 cel-miR-85 174803 gpb-1 cgUGCUGAAAAGUUUAUG-AAACAu |: ||||| | : || ||||| auAUUACUUUCCUUG-ACGUUUGUu 2 23 251 274 [ce6:II:11743621-11743644:-] 0.5065 120 0 -8.97 -0.5623 MIMAT0000293 cel-miR-238 174803 gpb-1 agacuuacCGUAGCCUCAUGUUu ||: |||||||||| agccacgcGCG-CGGAGUACAAu 2 16 566 587 [ce6:II:11743308-11743329:-] 0.5787 157 7 -20.89 -0.1754 MIMAT0000294 cel-miR-239a 174803 gpb-1 ggucaUGGAUACACAUCAUGUUu || : | | ||||||| gagccACGCGCGCGGAGUACAAu 2 19 565 587 [ce6:II:11743308-11743330:-] 0.5787 146 7 -11.82 -0.1771 MIMAT0000295 cel-miR-239b 174803 gpb-1 gucaugaaaaCACAUCAUGUUu | | ||||||| agccacgcgcGCGGAGUACAAu 2 13 566 587 [ce6:II:11743308-11743329:-] 0.5787 144 7 -9.35 -0.1788 MIMAT0000297 cel-miR-241 174803 gpb-1 aguAAAGAGCGUGGA-UGGAGu |||:|| : :|| ||||| cucUUUUUCUUCUCUCACCUCu 2 19 177 198 [ce6:II:11743697-11743718:-] 0.5065 126 0 -13.75 -0.4290 MIMAT0000302 cel-miR-246 174803 gpb-1 cgAGGAUGGGCU--UUGUAC-AUu || ||::| | |||||| || gaUCGUAUUCUACUAACAUGAUAu 2 20 469 492 [ce6:II:11743403-11743426:-] 0.5065 122 0 -11.90 -0.7838 MIMAT0000303 cel-miR-247 174803 gpb-1 ucuucucUUAUCCGAGAUCAGu ::|| :||||||| uuuguucGGUACUUUCUAGUCu 2 16 210 231 [ce6:II:11743664-11743685:-] 0.5065 147 7 -10.93 -0.5888 MIMAT0000314 cel-miR-259 174803 gpb-1 acgauggucuaauccUACUCUAaa ||||||| caagaaaagcacaauAUGAGAUcc 3 10 642 665 [ce6:II:11743230-11743253:-] 0.5787 125 0 -8.33 -0.1230

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score gpb-1 RAID00071357 cel-miR-77-3p miRNA MIMAT0000049 gpb-1 mRNA 174803 Prediction 0.1828 gpb-1 RAID00147530 cel-miR-241-5p miRNA MIMAT0000297 gpb-1 mRNA 174803 CLIP-seq//Prediction 0.6308 gpb-1 RAID00282680 cel-miR-247-3p miRNA MIMAT0000303 gpb-1 mRNA 174803 CLIP-seq//Prediction 0.6308 gpb-1 RAID00358606 cel-miR-239b-5p miRNA MIMAT0000295 gpb-1 mRNA 174803 CLIP-seq//Prediction 0.6308 gpb-1 RAID00577790 cel-miR-238-3p miRNA MIMAT0000293 gpb-1 mRNA 174803 CLIP-seq//Prediction 0.6308 gpb-1 RAID00959624 cel-miR-86-5p miRNA MIMAT0000059 gpb-1 mRNA 174803 Prediction 0.1828 gpb-1 RAID01133987 cel-miR-246-3p miRNA MIMAT0000302 gpb-1 mRNA 174803 CLIP-seq//Prediction 0.6308 gpb-1 RAID01233473 cel-miR-239a-5p miRNA MIMAT0000294 gpb-1 mRNA 174803 CLIP-seq//Prediction 0.6308 gpb-1 RAID01410429 cel-miR-85-3p miRNA MIMAT0000058 gpb-1 mRNA 174803 CLIP-seq//Prediction 0.6308 gpb-1 RAID01717007 cel-miR-45-3p miRNA MIMAT0000016 gpb-1 mRNA 174803 CLIP-seq//Prediction 0.6308 gpb-1 RAID02274403 cel-miR-392-3p miRNA MIMAT0000768 gpb-1 mRNA 174803 Prediction 0.1828 gpb-1 RAID02574643 cel-miR-44-3p miRNA MIMAT0000015 gpb-1 mRNA 174803 CLIP-seq//Prediction 0.6308 gpb-1 RAID02609899 cel-miR-58a-3p miRNA MIMAT0000030 gpb-1 mRNA 174803 Prediction 0.1828 gpb-1 RAID02928750 cel-miR-61-3p miRNA MIMAT0000033 gpb-1 mRNA 174803 CLIP-seq//Prediction 0.6478 gpb-1 RAID03095068 cel-miR-265 miRNA MIMAT0000321 gpb-1 mRNA 174803 CLIP-seq 0.5483 gpb-1 RAID03821322 cel-miR-259-5p miRNA MIMAT0000314 gpb-1 mRNA 174803 CLIP-seq//Prediction 0.6308 gpb-1 RAID03946744 cel-miR-82-3p miRNA MIMAT0000055 gpb-1 mRNA 174803 Prediction 0.1828