DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0015119 cel-miR-247* 172483 gpb-2 ccAUUAAUCUUUGAAAAGAGAu ||| || ||:|||||||| uuUAA-UAUUAAUUUUUCUCUu 2 21 4 24 [ce6:I:7318454-7318474:-] 0.5053 166 7 -12.08 -1.1328 MIMAT0015121 cel-miR-360* 172483 gpb-2 acuggcauuguugcCAGUGUu |||||| aucucaacuuucuaGUCACAa 2 8 117 137 [ce6:I:7318341-7318361:-] 0.5053 120 6 -13.35 -0.1780 MIMAT0005522 cel-miR-1021 172483 gpb-2 ggcuccuAAAGUGUACUAGAG-UGAa |||| | | ||||| ||| ccacuauUUUCUCCU-AUCUCAACUu 2 19 102 126 [ce6:I:7318352-7318376:-] 0.5053 124 0 -11.01 -0.9741 MIMAT0000015 cel-miR-44 172483 gpb-2 ucgacuuacacAGAGAUCAGu |:||||||| ccuaucucaacUUUCUAGUCa 2 11 114 134 [ce6:I:7318344-7318364:-] 0.5053 146 7 -12.93 -1.2202 MIMAT0000016 cel-miR-45 172483 gpb-2 ucgacuuacacAGAGAUCAGu |:||||||| ccuaucucaacUUUCUAGUCa 2 11 114 134 [ce6:I:7318344-7318364:-] 0.5053 146 7 -12.93 -1.2202 MIMAT0000033 cel-miR-61 172483 gpb-2 cuacucaUUGCCAAGAUCAGu ||| |||||||| cuaucucAAC-UUUCUAGUCa 2 15 115 134 [ce6:I:7318344-7318363:-] 0.5053 148 7 -12.71 -1.2173 MIMAT0000047 cel-miR-75 172483 gpb-2 acuucggccAACCAUCGAAAUu || | ||||||| cuuacaauuUUUG-AGCUUUAu 2 14 22 42 [ce6:I:7318436-7318456:-] 0.5053 143 7 -7.53 -0.7987 MIMAT0000051 cel-miR-79 172483 gpb-2 ucGAAACCAUUGGA---UCGAAAUa || | ||::| ||||||| uuCUCUUACAAUUUUUGAGCUUUAu 2 21 18 42 [ce6:I:7318436-7318460:-] 0.5053 143 7 -9.23 -0.8336 MIMAT0000286 cel-miR-231 172483 gpb-2 aaGACGGACAA--CU-AGUGCUCGAAu :| :|| || | |: :|||||| auUUUUCUCUUACAAUUUUUGAGCUUu 2 23 14 40 [ce6:I:7318438-7318464:-] 0.5053 128 6 -12.60 -0.1328 MIMAT0000303 cel-miR-247 172483 gpb-2 ucuucucuuauccGAGAUCAGu :||||||| uccuaucucaacuUUCUAGUCa 2 10 113 134 [ce6:I:7318344-7318365:-] 0.5053 141 7 -12.37 -1.2187 MIMAT0004222 cel-miR-787 172483 gpb-2 gcuuucuaugauuuuGCUCGAAu :|||||| uucucuuacaauuuuUGAGCUUu 2 9 18 40 [ce6:I:7318438-7318460:-] 0.5053 124 6 -9.35 -0.1289 MIMAT0004232 cel-miR-797 172483 gpb-2 agAAGAGUAACACUAACGAC--ACUAu | |||:| | ||||||| |||| agUACUCGU--UCAUUGCUGAAUGAUg 2 24 147 171 [ce6:I:7318307-7318331:-] 0.5053 120 0 -19.65 -0.8571

DNA & RNA Element - miRNAMap Gene Name Mature miRNA Target Start Target End miRNA 3-5 Alignment Target 5-3 gpb-2; F52A8.2 cel-let-7 103 124 UUGAUAUGUUGGAUGAUGGAGU- ||||| :|| |||:|||| CACUAUUU--UCUCCUAUCUCAA gpb-2; F52A8.2 cel-miR-2 203 236 CGUGU--AGUU---UCGA--CCG----ACACUAU :||| |||| :|| ||: ||||| AUACAAUUCAAAAAGGCAAGGGUGAACUGUGAG- gpb-2; F52A8.2 cel-miR-227 473 492 CAAGUCUUAGUACAG-CUUUCGA ||||||:|| | || :|| ---GAGAAUCGUG-CAGACGGCA gpb-2; F52A8.2 cel-miR-241 107 124 AGUAAAGAGCGUGGAUGGAGU- ||:|| ||||:|||| ---AUUUUCU--CCUAUCUCAA gpb-2; F52A8.2 cel-miR-242 435 460 AGCUUCGUUUCCGGA---UGCGUU- || ||||:| || |||||: GCGCAGCAGAAGCAUCUGACGCAGU gpb-2; F52A8.2 cel-miR-250 216 236 ACGGUUGUCAACUGACACUAA | ||| :|| ||||||| AGGCAAGGGUGAACUGUGAG- gpb-2; F52A8.2 cel-miR-253 59 79 -GGAAGGGUGUUGCGGAUGAUU ||||||||| |:|| ||| CCCUUCCCACCA-GUCU-CUAU gpb-2; F52A8.2 cel-miR-265 95 124 UAUGGUGGG------AAGGAGGG---AGU- ||||:|| ||:||||: ||| -AACCAUCCCACUAUUUUCUCCUAUCUCAA gpb-2; F52A8.2 cel-miR-353 291 308 UUAUGGUUGUGUACCGUUAAC | ||||::||||||| --GAGCAACGUAUGGCAAA-- gpb-2; F52A8.2 cel-miR-358 604 631 -CUGGAA--CUGU-CCC-UAUGGUUA- ||| || ||| ||:||||| CGACAACUGGAAGUGGGCAUGCCAAUG gpb-2; F52A8.2 cel-miR-392 446 469 AGUAGUGUGCACUAGCUACUAU- |||| ||| :|:||||||: GCAUCUGACGCAGUUGAUGAUGA gpb-2; F52A8.2 cel-miR-43 216 236 CGCUGUCGU--UCAUUUGACACUAU :||| :||:|||||||| ----AGGCAAGGGUGAACUGUGAG- gpb-2; F52A8.2 cel-miR-61 121 136 CUACUCAUUGCCAAGAUCAGU- ||| ||||||||| ------CAACU-UUCUAGUCAC gpb-2; F52A8.2 cel-miR-62 228 257 -GACAUUCGA--UCU---AAUGUAUAGU- ||||:|| :|| ||||||| || ACUGUGAGGAAAGGAAAAUUACAUAACAA gpb-2; F52A8.2 cel-miR-797 150 173 AGAAGAGUAACACUAACGAC--ACUAU- |||:|| ||||||| ||||: ---ACUCGUUC--AUUGCUGAAUGAUGU gpb-2; F52A8.2 cel-miR-90 281 303 UCCCCGUAAGUU---UGUUGUAUAGU |:|||||| :||||:||| ---AGUAUUCAAUGAGCAACGUAUG- gpb-2; F52A8.2 cel-let-7 95 122 UUGAUAUGUUG------GAUGAUGGAGU ||| || | || || |||:|||| AACCATCCCACTATTTTCTCCTATCTCA gpb-2; F52A8.2 cel-miR-2 213 236 cguguaGUUUCGAC-CGACACUau |||:| || |||||| aaaaggCAAGGGTGAACTGTGAgg gpb-2; F52A8.2 cel-miR-227 453 477 caaGUC--UUAGUAC-AGCUUUCga ||| :|| ||| ||||:|| acgCAGTTGATGATGATCGAGAGaa gpb-2; F52A8.2 cel-miR-234 278 299 uUCCCAUAAG-AGCUCGUUauu || |||||| :|||||| tAGAGTATTCAATGAGCAAcgt gpb-2; F52A8.2 cel-miR-241 102 122 aGUAAAGAGCGUGGAUGGAGU || | :|: | ||||:|||| cCACTATTTTCTCCTATCTCA gpb-2; F52A8.2 cel-miR-250 216 236 aCGGUUGUCAACUGACACUaa | ||| :|| ||||||| aGGCAAGGGTGAACTGTGAgg gpb-2; F52A8.2 cel-miR-253 60 89 GGAAGGGU-GU------UGCGG--AUGAUu |||||||| || |: || ||||| CCTTCCCACCAGTCTCTATCCCTGTACTAt gpb-2; F52A8.2 cel-miR-265 99 122 UAUGGUGG-GAAGGAGG---GAGU || ||||: :||:|||| |||| ATCCCACTATTTTCTCCTATCTCA gpb-2; F52A8.2 cel-miR-353 288 309 UUA-UGGUUGUGUACCGUUAAc ||| | ||||::||||||| | AATGAGCAACGTATGGCAAATt gpb-2; F52A8.2 cel-miR-358 605 629 CUG--GAACU--GUCCCUAUGGUUA ||| || || ::|| ||:||||| GACAACTGGAAGTGGGCATGCCAAT gpb-2; F52A8.2 cel-miR-43 212 236 cgcUGUCGUU--CAUUUGACACUau | :|||| ||:|||||||| aaaAAGGCAAGGGTGAACTGTGAgg gpb-2; F52A8.2 cel-miR-62 229 255 GACA-----UUCGAUCUAAUGUAUAGU |||| ||| | |||||||| || CTGTGAGGAAAGGAAAATTACATAACA gpb-2; F52A8.2 cel-miR-786 574 598 uaacUUGUA--GUAAGUCCCGUaau |||:| : ||| ||||| agaaAACGTTCTCTTCTGGGCAagc gpb-2; F52A8.2 cel-miR-797 147 171 agAAGAGUAACACUAACGAC--ACUAu | |||:| | ||||||| |||| agTACTCGT--TCATTGCTGAATGATg gpb-2; F52A8.2 cel-miR-82 449 473 uGAC--CG-AAAGUGCUACUAGagu ||| || || |:||||||| tCTGACGCAGTTGATGATGATCgag gpb-2; F52A8.2 cel-miR-90 278 303 ucCCCGUAAGU---UUGUUGUAUAgu | |:||||| |:||||:||| taGAGTATTCAATGAGCAACGTATgg gpb-2; F52A8.2 cel-miR-61 127 134 CUACUCA-----------------------UUGCCAAGAUCAGU ||| ||||||||| UCUAACCAUCCCACUAUUUUCUCCUAUCUCAACU-UUCUAGUCAC

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score gpb-2 RAID00174727 cel-miR-231-3p miRNA MIMAT0000286 gpb-2 mRNA 172483 Prediction 0.1828 gpb-2 RAID00345829 cel-miR-247-3p miRNA MIMAT0000303 gpb-2 mRNA 172483 Prediction 0.2202 gpb-2 RAID00774967 cel-miR-79-3p miRNA MIMAT0000051 gpb-2 mRNA 172483 Prediction 0.2202 gpb-2 RAID01056062 cel-miR-787-3p miRNA MIMAT0004222 gpb-2 mRNA 172483 Prediction 0.1828 gpb-2 RAID01412094 cel-miR-360-3p miRNA MIMAT0000702 gpb-2 mRNA 172483 Prediction 0.1828 gpb-2 RAID01804979 cel-miR-45-3p miRNA MIMAT0000016 gpb-2 mRNA 172483 Prediction 0.2202 gpb-2 RAID01811706 cel-miR-75-3p miRNA MIMAT0000047 gpb-2 mRNA 172483 Prediction 0.1828 gpb-2 RAID02629101 cel-miR-44-3p miRNA MIMAT0000015 gpb-2 mRNA 172483 Prediction 0.2202 gpb-2 RAID02975270 cel-miR-61-3p miRNA MIMAT0000033 gpb-2 mRNA 172483 Prediction 0.2381 gpb-2 RAID03714455 cel-miR-797-5p miRNA MIMAT0004232 gpb-2 mRNA 172483 Prediction 0.1828