DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0015102 cel-miR-60* 181292 ldb-1 uaAAAUACCGU-GAG----AAGGUCAa ||||| |: ||| ||||||| aaUUUAUUCCGUCUCCUAUUUCCAGUc 2 21 106 132 [ce6:X:11040068-11040094:+] 0.6435 150 7 -13.53 -0.9621 MIMAT0015119 cel-miR-247* 181292 ldb-1 ccauuaaucuuugaaAAGAGAu |||||| cugaagaucucaaaaUUCUCUg 2 8 454 475 [ce6:X:11040416-11040437:+] 0.4810 120 6 -8.62 -0.1006 MIMAT0000313 cel-miR-258 181292 ldb-1 uuuuccUAAGGAGAGUUUUGg | ||| |||||||| auuuccAGUCCACUCAAAACa 2 16 123 143 [ce6:X:11040085-11040105:+] 0.6435 159 7 -14.89 -0.9203 MIMAT0000324 cel-miR-268 181292 ldb-1 ugGUUUGACGAAGA-UU-AAG--AACGg || |:| ||||| || ||| |||| uaCACAUUUCUUCUCAAUUUCGAUUGCu 2 23 428 455 [ce6:X:11040390-11040417:+] 0.4810 120 0 -13.15 -0.8896 MIMAT0005032 cel-miR-1019 181292 ldb-1 gaccuuucGUU-ACACCUUAAUGUc ||| ||| |||||| acaguucuCAAUUGUCAUAUUACAc 2 17 189 213 [ce6:X:11040151-11040175:+] 0.6435 123 6 -7.33 -0.1359 MIMAT0006586 cel-miR-1819 181292 ldb-1 agGUAGUUCGAGUUAGUAAGgu |||: : :| |||||| guCAUUUGAUUAUUUCAUUCau 3 21 240 261 [ce6:X:11040202-11040223:+] 0.4810 128 0 -10.59 -0.1014 MIMAT0006586 cel-miR-1819 181292 ldb-1 agguaguucgaguuAGUAAGGu ||||||: acacccuuuuguguUCAUUCUa 2 9 391 412 [ce6:X:11040353-11040374:+] 0.4810 124 0 -12.28 -0.1180 MIMAT0006587 cel-miR-1820 181292 ldb-1 cuUGUA-GUAGCUUUUUGUUAGUUUu ||:| |||: || :||||||||| auACGUCCAUU-AACGACAAUCAAAa 2 24 364 388 [ce6:X:11040326-11040350:+] 0.4810 172 7 -17.43 -0.6759 MIMAT0006587 cel-miR-1820 181292 ldb-1 cuUGUAGUAGCUUU-UUG-UUA-GUUUu | | || :|||| |:| ||| |||| ucAAAACACUGAAACAGCAAAUACAAAg 2 24 136 163 [ce6:X:11040098-11040125:+] 0.6435 129 0 -11.62 -1.1177 MIMAT0006590 cel-miR-1823 181292 ldb-1 aaUGAGG-AUUUG-UGAAGGUCAu |:||| | | |:||||||| uuAUUCCGUCUCCUAUUUCCAGUc 2 21 109 132 [ce6:X:11040071-11040094:+] 0.6435 150 7 -20.00 -0.9621 MIMAT0006775 cel-miR-1833 181292 ldb-1 cgugugaauaaAGCGUUCGGAGc || ||||||| uccaaucuuccUCAAAAGCCUCa 2 13 341 363 [ce6:X:11040303-11040325:+] 0.4810 144 7 -13.84 -1.1391 MIMAT0011425 cel-miR-2207 181292 ldb-1 gaauaugugucagaguUAAGUGu |||||| ugugucaaaaaaaauuAUUCACa 2 8 523 545 [ce6:X:11040485-11040507:+] 0.4464 120 6 -9.39 -0.4205 MIMAT0011430 cel-miR-2208b-3p 181292 ldb-1 acUUCACAUGGUUUUAGACGua || | | :: ||||||| auAAAUUUUUUCCAAUCUGC-- 3 21 557 576 [ce6:X:11040519-11040538:+] 0.4601 132 0 -9.09 -0.1736 MIMAT0011431 cel-miR-2209a* 181292 ldb-1 cuuccucuucucaccAAUGUGag |||||| uucucaauugucauaUUACACaa 3 9 193 215 [ce6:X:11040155-11040177:+] 0.6435 120 0 -7.73 -0.1821 MIMAT0011433 cel-miR-2209c* 181292 ldb-1 uuuGUUCUGCACGCCAAUGUGag ||| :|| |||||| ucuCAA-UUGUCAUAUUACACaa 3 21 194 215 [ce6:X:11040156-11040177:+] 0.6435 122 0 -7.76 -0.1770 MIMAT0011435 cel-miR-2210 181292 ldb-1 ggaUUUUUAACUAA--CUAGACGga | ||||| || |||||| uaaAUAAAUUUUUUCCAAUCUGC-- 3 21 554 576 [ce6:X:11040516-11040538:+] 0.4601 135 0 -6.19 -0.1687 MIMAT0011439 cel-miR-2212 181292 ldb-1 guUUCAGUCGGAUACUAGACGgu || |: :| | |||||| uaAAUUUUUUCCA--AUCUGC-- 3 22 558 576 [ce6:X:11040520-11040538:+] 0.4601 122 0 -7.07 -0.1627 MIMAT0011451 cel-miR-2217* 181292 ldb-1 cuaGCUGUGGCUGA----CGGGUGAGac || | || |:| |:|||||| uucCGUCUCCUAUUUCCAGUCCACUCaa 3 22 112 139 [ce6:X:11040074-11040101:+] 0.6435 132 0 -17.42 -0.1955 MIMAT0011453 cel-miR-2209b* 181292 ldb-1 cuuccucuucucaacAAUGUGa |||||| uucucaauugucauaUUACACa 2 8 193 214 [ce6:X:11040155-11040176:+] 0.6435 120 6 -4.76 -0.2811 MIMAT0011458 cel-miR-2218b* 181292 ldb-1 agagUGAUGUUUGAUGUUUAaa :| ||:|| |||||| acagGCCACGAA--ACAAAUca 3 19 87 106 [ce6:X:11040049-11040068:+] 0.6435 131 0 -7.53 -0.1164 MIMAT0000035 cel-miR-63 181292 ldb-1 aaaggUUGAGCGAAGUCAC-AGUAu ||| | |||: ||| |||| aaaagAACACCCUUUUGUGUUCAUu 2 20 385 409 [ce6:X:11040347-11040371:+] 0.4810 131 0 -10.53 -0.6812 MIMAT0000035 cel-miR-63 181292 ldb-1 aaagguuGAGCGAAGUCACAGUau :|: || |||||| ucauuguUUUCCUAGUGUGUCAaa 3 18 508 531 [ce6:X:11040470-11040493:+] 0.4464 125 0 -11.01 -0.1505 MIMAT0000035 cel-miR-63 181292 ldb-1 aaAGGUUGAGCGAAGUCACAGUAu | ||::| || | |||||| acUACAGUU--CUCAAUUGUCAUa 2 23 186 207 [ce6:X:11040148-11040169:+] 0.6435 123 6 -14.14 -0.2830 MIMAT0000036 cel-miR-64 181292 ldb-1 aagccauUGCGAAGUCAC-AGUAu || |||: ||| |||| aaagaacACCCUUUUGUGUUCAUu 2 17 386 409 [ce6:X:11040348-11040371:+] 0.4810 124 0 -10.08 -0.6775 MIMAT0000036 cel-miR-64 181292 ldb-1 aagcCAUUGCGAAGUCACAGUau || : || |||||| cauuGUUUUCCUAGUGUGUCAaa 3 20 509 531 [ce6:X:11040471-11040493:+] 0.4464 123 0 -9.50 -0.1534 MIMAT0000036 cel-miR-64 181292 ldb-1 aagccaUUGCGAAGUCACAGUAu |:: || | |||||| uacuacAGUUCUCAAUUGUCAUa 2 18 185 207 [ce6:X:11040147-11040169:+] 0.6435 121 6 -11.01 -0.2879 MIMAT0000037 cel-miR-65 181292 ldb-1 aagcCAAUGCGAAGUCACAGUau ||| : || |||||| cauuGUUUUCCUAGUGUGUCAaa 3 20 509 531 [ce6:X:11040471-11040493:+] 0.4464 131 0 -9.29 -0.1520 MIMAT0000037 cel-miR-65 181292 ldb-1 aagccaaUGCGAAGUCAC-AGUAu || |||: ||| |||| aaagaacACCCUUUUGUGUUCAUu 2 17 386 409 [ce6:X:11040348-11040371:+] 0.4810 124 0 -9.67 -0.6775 MIMAT0000037 cel-miR-65 181292 ldb-1 aagccaAUG-CGA-AG-UCACAGUAu ||| |:| || | |||||| gauuacUACAGUUCUCAAUUGUCAUa 2 18 182 207 [ce6:X:11040144-11040169:+] 0.6435 122 6 -11.82 -0.2854 MIMAT0000038 cel-miR-66 181292 ldb-1 aguguAGGGAUUAGUCACAGUac |:||||:| |||||| uuguuUUCCUAGU--GUGUCAaa 3 19 511 531 [ce6:X:11040473-11040493:+] 0.4464 139 0 -15.36 -0.1355 MIMAT0000038 cel-miR-66 181292 ldb-1 agUGUAGGGAUUAGUCACAGUAc ||| ::|| | | |||||| cuACAGUUCUCA--AUUGUCAUa 2 22 187 207 [ce6:X:11040149-11040169:+] 0.6435 126 6 -11.35 -0.2854 MIMAT0000038 cel-miR-66 181292 ldb-1 agUGUAGGGAUUAGUCAC-AGUAc ||| |||| |: ||| |||| gaACA-CCCU--UUUGUGUUCAUu 2 22 389 409 [ce6:X:11040351-11040371:+] 0.4810 120 0 -14.54 -0.6775 MIMAT0000048 cel-miR-76 181292 ldb-1 agUUCCGAAGUAGU-UGUUGCUu |: |: |: | | :|||||| cgAGUGUGUUCUGAUGCAACGAa 2 21 58 80 [ce6:X:11040020-11040042:+] 0.6435 131 6 -16.59 -0.1016 MIMAT0000059 cel-miR-86 181292 ldb-1 cugacaccGUUUCGUAAGUGAAu ||||| ||||||| agcaaauaCAAAG--UUCACUUu 2 16 151 171 [ce6:X:11040113-11040133:+] 0.6435 152 7 -12.51 -0.9256 MIMAT0000284 cel-miR-229 181292 ldb-1 gcuaccuUUUCUAUUGGUCACAGUAa | || | | | |||||| gauuacuACAGUUCUCAAUUGUCAUa 2 20 182 207 [ce6:X:11040144-11040169:+] 0.6435 123 6 -7.09 -0.2854 MIMAT0000284 cel-miR-229 181292 ldb-1 gcuaccuuuucuauugguCACAGUaa |||||| aaucauuguuuuccuaguGUGUCAaa 3 9 506 531 [ce6:X:11040468-11040493:+] 0.4464 120 0 -9.05 -0.1520 MIMAT0000749 cel-lsy-6 181292 ldb-1 gcuuuacgcagagUAUGUUUu ||||||| acugaaacagcaaAUACAAAg 2 9 143 163 [ce6:X:11040105-11040125:+] 0.6435 140 7 -9.49 -1.0619 MIMAT0000749 cel-lsy-6 181292 ldb-1 gcuuUACGCAGAGUAUGUUuu :| | |: :|||||| uuguGUUCAUUCUAUACAAua 3 18 399 419 [ce6:X:11040361-11040381:+] 0.4810 129 0 -9.84 -0.1629 MIMAT0004220 cel-miR-785 181292 ldb-1 agaUGU-GUUU-UGUU--AAGUGAAu ||| |||| |||| ||||||| gaaACAGCAAAUACAAAGUUCACUUu 2 20 146 171 [ce6:X:11040108-11040133:+] 0.6435 164 7 -14.57 -0.9441

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score ldb-1 RAID00197581 cel-miR-66-5p miRNA MIMAT0000038 ldb-1 mRNA 181292 Prediction 0.1828 ldb-1 RAID00214178 cel-lsy-6-3p miRNA MIMAT0000749 ldb-1 mRNA 181292 Prediction 0.2202 ldb-1 RAID00990412 cel-miR-82-3p miRNA MIMAT0000055 ldb-1 mRNA 181292 Prediction 0.2202 ldb-1 RAID01064995 cel-miR-65-5p miRNA MIMAT0000037 ldb-1 mRNA 181292 Prediction 0.1828 ldb-1 RAID01150148 cel-miR-47-3p miRNA MIMAT0000018 ldb-1 mRNA 181292 Prediction 0.1828 ldb-1 RAID01279140 cel-miR-355-5p miRNA MIMAT0000697 ldb-1 mRNA 181292 Prediction 0.1828 ldb-1 RAID01872215 cel-miR-81-3p miRNA MIMAT0000054 ldb-1 mRNA 181292 Prediction 0.1828 ldb-1 RAID01881095 cel-miR-64-5p miRNA MIMAT0000036 ldb-1 mRNA 181292 Prediction 0.1828 ldb-1 RAID02062920 cel-miR-76-3p miRNA MIMAT0000048 ldb-1 mRNA 181292 Prediction 0.2202 ldb-1 RAID02065845 cel-miR-86-5p miRNA MIMAT0000059 ldb-1 mRNA 181292 Prediction 0.2202 ldb-1 RAID02352773 cel-miR-63-3p miRNA MIMAT0000035 ldb-1 mRNA 181292 Prediction 0.1828 ldb-1 RAID02707132 cel-miR-80-3p miRNA MIMAT0000053 ldb-1 mRNA 181292 Prediction 0.1828 ldb-1 RAID03087862 cel-miR-229-5p miRNA MIMAT0000284 ldb-1 mRNA 181292 Prediction 0.1828 ldb-1 RAID03147818 cel-miR-250-3p miRNA MIMAT0000306 ldb-1 mRNA 181292 Prediction 0.1828 ldb-1 RAID03771547 cel-miR-58a-3p miRNA MIMAT0000030 ldb-1 mRNA 181292 Prediction 0.2202 ldb-1 RAID03824338 cel-miR-785-3p miRNA MIMAT0004220 ldb-1 mRNA 181292 Prediction 0.1828