DNA & RNA Element - miRTarBase Target Gene (Entrez ID) miRTarBase ID miRNA Species (miRNA) Target Gene Species (Target Gene) Experiments Support Type References (PMID) MIRT006491 cel-miR-35-3p Caenorhabditis elegans lin-23 174058 Caenorhabditis elegans Luciferase reporter assay//qRT-PCR Functional MTI 21691303

DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0015091 cel-let-7* 174058 lin-23 cauuccaucuuuuaACGUAUCAAGu ||:||||||| ggaaaauuguguucUGUAUAGUUCg 2 12 582 606 [ce6:II:6374445-6374469:+] 0.5976 151 7 -16.74 -1.0093 MIMAT0015099 cel-miR-51* 174058 lin-23 acgUGGACAUGGACGAAGGUAc |::| | :| ||||||| cuaAUUUUUCUCCCCUUCCAUu 2 20 529 550 [ce6:II:6374392-6374413:+] 0.5976 151 7 -10.62 -0.4979 MIMAT0000050 cel-miR-78 174058 lin-23 cguguuuguuggucCGGAGGu |||||| ucuccccuuccauuGCCUCCa 2 8 537 557 [ce6:II:6374400-6374420:+] 0.5976 120 6 -16.53 -0.2576 MIMAT0015119 cel-miR-247* 174058 lin-23 ccauuAAUCUUUGAAAA-GAGAu || ||||||| |||| uccccUUCCCAACUUUUCCUCUc 2 18 139 161 [ce6:II:6374002-6374024:+] 0.5259 125 0 -9.42 -0.9142 MIMAT0000320 cel-miR-264 174058 lin-23 guauuguuguuGGUGGGCGg :||||||| ccccgcuuuccUCACCCGCa 2 10 460 479 [ce6:II:6374323-6374342:+] 0.5976 141 7 -16.33 -1.0893 MIMAT0015240 cel-miR-788* 174058 lin-23 gcuaagauuaGGUAAAGg ||||||| aucccucuucCCAUUUCu 2 9 399 416 [ce6:II:6374262-6374279:+] 0.5976 140 7 -10.74 -0.7454 MIMAT0015240 cel-miR-788* 174058 lin-23 gcUAAGAUUAGGUAAAGg | ||| | ||||||: ccACUCUCA-CCAUUUUa 2 17 371 387 [ce6:II:6374234-6374250:+] 0.5976 134 0 -6.93 -0.1114 MIMAT0015240 cel-miR-788* 174058 lin-23 gcuaagauuaGGUAAAGg ||||||: acacuccuucCCAUUUUu 2 9 6 23 [ce6:II:6373869-6373886:+] 0.5259 124 0 -7.21 -0.1686 MIMAT0005522 cel-miR-1021 174058 lin-23 ggcuccuaaaguguacuAGAGUGAa ||||||| cccuucccaacuuuuccUCUCACUa 2 9 141 165 [ce6:II:6374004-6374028:+] 0.5259 140 7 -11.27 -0.9042 MIMAT0005523 cel-miR-1022 174058 lin-23 cuaccgcAG-GAUUGUU-ACUAGAa || ||| :|| |||||| uuuccucUCACUAUUAACUGAUCUg 2 17 153 177 [ce6:II:6374016-6374040:+] 0.5259 123 6 -10.36 -1.0778 MIMAT0006586 cel-miR-1819 174058 lin-23 agguagUUCGA-GUUAGUAAGGu || || || || |||| ------AAUCUACACUCCUUCCc 2 17 1 17 [ce6:II:6373864-6373880:+] 0.5259 123 0 -8.05 -0.2886 MIMAT0011446 cel-miR-2215 174058 lin-23 uuuguuGUGCGCGAUGCUAAGa :||| || ||||||| uucuucUACG-GCGACGAUUCu 2 17 426 446 [ce6:II:6374289-6374309:+] 0.5976 154 7 -18.75 -0.4891 MIMAT0011449 cel-miR-1832b* 174058 lin-23 uuucacccggcucgcUAAGCGAc ||||||| uuccaaauuucuuuuAUUCGCUc 2 9 559 581 [ce6:II:6374422-6374444:+] 0.5976 140 7 -7.72 -1.0447 MIMAT0011451 cel-miR-2217* 174058 lin-23 cuagCUGUGGCUGA-CGGGUGAGAc |:::|| |:| :||||||| ugcgGGUGCCCAUUCAUCCACUCUc 2 21 354 378 [ce6:II:6374217-6374241:+] 0.5976 155 7 -21.86 -0.8938 MIMAT0011458 cel-miR-2218b* 174058 lin-23 agAGUGAUGUUUGAUGUUUAAa |::| | ||:| |||||| caUUGCCUCCAAUUCCAAAUUu 2 21 547 568 [ce6:II:6374410-6374431:+] 0.5976 132 6 -9.84 -0.1021 MIMAT0014446 cel-miR-2953-5p 174058 lin-23 uaaaagugcuugugAAGACAu |||||| cucggaaaauugugUUCUGUa 2 8 579 599 [ce6:II:6374442-6374462:+] 0.5976 120 6 -10.02 -0.1856 MIMAT0000031 cel-miR-59 174058 lin-23 guAGUAGGACUAUUUGC-UAAGCu |::|::| :||| || ||||| ucUUGUUUUUGUAACCGCAUUCGa 2 22 273 296 [ce6:II:6374136-6374159:+] 0.4002 133 0 -13.49 -0.4536 MIMAT0000058 cel-miR-85 174058 lin-23 cgUGCUGAAAAGUUU-AUGAAACAu | || || ||| | |||||| aaAAGAAAGUUGAAAUUCCUUUGUa 2 23 99 123 [ce6:II:6373962-6373986:+] 0.5259 129 6 -11.54 -0.1162 MIMAT0000697 cel-miR-355 174058 lin-23 guAUCGAG---UCCGAU-UUUGUUu |||:|| | | || |||||| uaUAGUUCGAAAUGAUAUAAACAAa 2 20 598 622 [ce6:II:6374461-6374485:+] 0.5976 122 6 -13.48 -1.3032 MIMAT0004227 cel-miR-792 174058 lin-23 agacuuucaACUUCUCUAAAGUu ||| ||||||| acuauuaacUGAUCUGAUUUCAu 2 15 162 184 [ce6:II:6374025-6374047:+] 0.5259 146 7 -9.54 -0.7424 MIMAT0004232 cel-miR-797 174058 lin-23 agaaGAGUAACACUAACG-ACACUAu || | | ||||| | |||||| uuaaCUGA-UCUGAUUUCAUGUGAUa 2 22 166 190 [ce6:II:6374029-6374053:+] 0.5259 131 6 -15.37 -0.8279

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score lin-23 RAID00022652 cel-miR-256 miRNA MIMAT0000311 lin-23 mRNA 174058 CLIP-seq 0.5483 lin-23 RAID00083492 cel-miR-250-3p miRNA MIMAT0000306 lin-23 mRNA 174058 CLIP-seq 0.5483 lin-23 RAID00223754 cel-miR-246-3p miRNA MIMAT0000302 lin-23 mRNA 174058 CLIP-seq 0.5483 lin-23 RAID00342327 cel-miR-265 miRNA MIMAT0000321 lin-23 mRNA 174058 CLIP-seq 0.5483 lin-23 RAID01205464 cel-miR-85-3p miRNA MIMAT0000058 lin-23 mRNA 174058 CLIP-seq//Prediction 0.6308 lin-23 RAID01355161 cel-miR-797-5p miRNA MIMAT0004232 lin-23 mRNA 174058 CLIP-seq//Prediction 0.6478 lin-23 RAID01863529 cel-miR-2-3p miRNA MIMAT0000004 lin-23 mRNA 174058 CLIP-seq 0.5483 lin-23 RAID02207828 cel-miR-80-3p miRNA MIMAT0000053 lin-23 mRNA 174058 CLIP-seq 0.5483 lin-23 RAID02257392 cel-mir-2953 miRNA MI0013633 lin-23 mRNA 174058 Prediction 0.1828 lin-23 RAID02282155 cel-miR-43-3p miRNA MIMAT0000014 lin-23 mRNA 174058 CLIP-seq 0.5483 lin-23 RAID02414589 cel-miR-35-3p miRNA MIMAT0000006 lin-23 mRNA 174058 Reporter Assay//RT-PCR 0.8808 lin-23 RAID02985018 cel-miR-355-5p miRNA MIMAT0000697 lin-23 mRNA 174058 Prediction 0.1828 lin-23 RAID03072298 cel-miR-792-3p miRNA MIMAT0004227 lin-23 mRNA 174058 Prediction 0.1828 lin-23 RAID03690581 cel-miR-59-3p miRNA MIMAT0000031 lin-23 mRNA 174058 Prediction 0.1828