DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0015104 cel-miR-63* 178895 mlk-1 acUGAUGGCUGCUCAAUCu |:| :| |||||||| uuAUUUUCUCCGAGUUAGu 2 18 110 128 [ce6:V:5056637-5056655:-] 0.5880 153 7 -14.19 -0.9887 MIMAT0015107 cel-miR-71* 178895 mlk-1 cgcUUUUUGUCUUAUCACUAu |||||| | :||||||| aaaAAAAACUGUGUAGUGAUg 2 19 283 303 [ce6:V:5056462-5056482:-] 0.5880 170 7 -16.13 -0.5503 MIMAT0015110 cel-miR-84* 178895 mlk-1 cggcucaaUCAACUUUGUAACAc | || ||||||| | ugcaucagAAUUCAAACAUUAUu 2 16 333 355 [ce6:V:5056410-5056432:-] 0.5880 127 0 -3.12 -0.1164 MIMAT0015115 cel-miR-239b* 178895 mlk-1 aaaaacgugugguguUUUCACg |||||| uuauuuuuuucuuuuAAAGUGa 2 8 351 372 [ce6:V:5056393-5056414:-] 0.5880 120 6 -7.04 -0.1735 MIMAT0015116 cel-miR-240* 178895 mlk-1 guaagaucagaguuuUAGGAGc |||||| cauuucucaaguuuuAUCCUCu 2 8 48 69 [ce6:V:5056696-5056717:-] 0.5880 120 6 -14.47 -0.2477 MIMAT0015119 cel-miR-247* 178895 mlk-1 ccauuAAUCUUUGAAAAGAGAu || | ||||||||| cuauuUUUGUCUCUUUUCUCUu 2 18 195 216 [ce6:V:5056549-5056570:-] 0.5880 153 7 -11.74 -1.0260 MIMAT0015119 cel-miR-247* 178895 mlk-1 ccAUUAAUCUUUG-AAAAGAGAu |: || |||| |||||:| ugUGUUUUCAAACAAUUUCUUUa 2 21 90 112 [ce6:V:5056653-5056675:-] 0.5880 139 0 -9.82 -0.1204 MIMAT0015119 cel-miR-247* 178895 mlk-1 ccauuaaucuuUGAAAAGAGau || |||||| gaugcuauuguACAUUUCUCaa 3 12 36 57 [ce6:V:5056708-5056729:-] 0.5880 127 0 -7.12 -0.2121 MIMAT0000313 cel-miR-258 178895 mlk-1 uuuuccuAAGGAG-AGUUUUGg ||:||| ||||||| ugucucuUUUCUCUUCAAAACg 2 15 202 223 [ce6:V:5056542-5056563:-] 0.5880 157 7 -12.87 -0.9529 MIMAT0000324 cel-miR-268 178895 mlk-1 ugGUUUGACGAAGAUUAAGAACGg ||||:| ||: ||:|||| auCAAAUUUAUUU---UUUUUGCa 2 23 316 336 [ce6:V:5056429-5056449:-] 0.5880 138 0 -11.57 -0.1021 MIMAT0000698 cel-miR-356 178895 mlk-1 acUAAACAAGCGCAACG-AGUu |||| ||: : |||| ||| aaAUUUAUUUUUUUUGCAUCAg 2 20 319 340 [ce6:V:5056425-5056446:-] 0.5880 127 0 -6.57 -1.2778 MIMAT0004235 cel-miR-800 178895 mlk-1 gccgucuguuAAAGGCUCAAac | |||||||| uucuuuauuuUCUCCGAGUUag 3 13 106 127 [ce6:V:5056638-5056659:-] 0.5880 132 0 -12.46 -0.1538 MIMAT0006587 cel-miR-1820 178895 mlk-1 cuugUAGUAGCUUUUUGUUAGUUUu :| |||| || ||||||| augaGUAAUCGUAA---AAUCAAAu 2 22 301 322 [ce6:V:5056443-5056464:-] 0.5880 153 7 -10.99 -1.2836 MIMAT0011425 cel-miR-2207 178895 mlk-1 gaAUAUGUGUCAGAGUUAAGUgu | | ::|| || |||||| uuUUUUUGCA-UCAGAAUUCAaa 3 22 327 348 [ce6:V:5056417-5056438:-] 0.5880 131 0 -9.03 -0.1746 MIMAT0011444 cel-miR-2214 178895 mlk-1 uuGCGGC-CAGUUCA-ACA-ACAGUUAc | ||| ||:|: | | | ||||||| uuCUCCGAGUUAGUUAUAUGUGUCAAUu 2 24 115 142 [ce6:V:5056623-5056650:-] 0.5880 156 7 -17.38 -1.0234 MIMAT0011451 cel-miR-2217* 178895 mlk-1 cuAGCUGUGGCUGACGGGUGAGac || | |||| | ||||||| uuUCACCCCCGAAU-CCCACUCca 3 23 240 262 [ce6:V:5056503-5056525:-] 0.5880 144 0 -20.81 -0.1153 MIMAT0011458 cel-miR-2218b* 178895 mlk-1 agagugauguuugauGUUUAAa |||||| gaguaaucguaaaauCAAAUUu 2 8 303 324 [ce6:V:5056441-5056462:-] 0.5880 120 6 -6.84 -0.3105 MIMAT0011460 cel-miR-2219 178895 mlk-1 gaagucGAAAGGGAGCGUGAAGc ||||::: |||||||| ucuuuuCUUUUUUACGCACUUCa 2 18 67 89 [ce6:V:5056676-5056698:-] 0.5880 165 7 -21.10 -1.2126 MIMAT0011462 cel-miR-2220 178895 mlk-1 gacAUUCAGGUGUUUGUUAAcu |: ||:: ||||||||| ucaUGUGUUUUCAAACAAUUuc 3 20 87 108 [ce6:V:5056657-5056678:-] 0.5880 147 0 -11.21 -0.1363 MIMAT0014446 cel-miR-2953-5p 178895 mlk-1 uaAAAGUGCUUGUGAAG-ACAu |||:||| |||||| ||| uuUUUUACG--CACUUCAUGUg 2 20 74 93 [ce6:V:5056672-5056691:-] 0.5880 132 0 -18.76 -1.0483 MIMAT0014447 cel-miR-2953-3p 178895 mlk-1 cgaUGUCUUCUCG-AUCACUAgu | | || |: ||||||| uaaAAAAAACUGUGUAGUGAUga 3 20 282 304 [ce6:V:5056461-5056483:-] 0.5880 130 0 -9.28 -0.1003 MIMAT0000003 cel-miR-1 178895 mlk-1 auguaugaAGAAAUGUAAGGu || |||||||| cuccucaaUCCAUACAUUCCg 2 14 147 167 [ce6:V:5056598-5056618:-] 0.5880 149 7 -13.06 -0.9711 MIMAT0000035 cel-miR-63 178895 mlk-1 aaAGG-UUGAGCGAAGU-CACAGUau ||| |::| |:| :| |||||| ucUCCGAGUUAGUUAUAUGUGUCAau 3 23 116 141 [ce6:V:5056624-5056649:-] 0.5880 140 0 -16.69 -0.1568 MIMAT0000036 cel-miR-64 178895 mlk-1 aaGC-CAUUGCGAAGU-CACAGUau || || | |:| :| |||||| ucCGAGUUA-GUUAUAUGUGUCAau 3 22 118 141 [ce6:V:5056624-5056647:-] 0.5880 129 0 -13.49 -0.1598 MIMAT0000037 cel-miR-65 178895 mlk-1 aaGC-CAAUGCGAAGU-CACAGUau || |||| |:| :| |||||| ucCGAGUUA-GUUAUAUGUGUCAau 3 22 118 141 [ce6:V:5056624-5056647:-] 0.5880 137 0 -15.67 -0.1583 MIMAT0000038 cel-miR-66 178895 mlk-1 agugUAGGGAUUAGUCACAGUac :|: | || |||||| ccgaGUUAGUUAUAUGUGUCAau 3 20 119 141 [ce6:V:5056624-5056646:-] 0.5880 127 0 -10.57 -0.1583 MIMAT0000049 cel-miR-77 178895 mlk-1 accUGUCGAUACCGGACUACUu | | ||:|| |||||| aaaAAAACUGUGUAGUGAUGAg 2 20 284 305 [ce6:V:5056460-5056481:-] 0.5880 127 6 -14.65 -0.1393 MIMAT0000058 cel-miR-85 178895 mlk-1 cgugcUGAAAAG--UUUAU-GAAACAu || || | :|:|| |||||| uccauACAUUCCGUGAGUAUCUUUGUu 2 20 155 181 [ce6:V:5056584-5056610:-] 0.5880 122 6 -10.33 -0.8608 MIMAT0000284 cel-miR-229 178895 mlk-1 gcuaccuuUUCUAUUGGU---CACAGUaa :|| ||:::| |||||| uuuucuccGAGUUAGUUAUAUGUGUCAau 3 19 113 141 [ce6:V:5056624-5056652:-] 0.5880 129 0 -11.24 -0.1538 MIMAT0000291 cel-miR-236 178895 mlk-1 ucGCAGUAAU-GGACUGUCAUAAu | ||| | :| ||| |||| ugCAUCAGAAUUCAAACAUUAUUu 2 22 333 356 [ce6:V:5056409-5056432:-] 0.5880 120 0 -7.29 -0.1043 MIMAT0000298 cel-miR-242 178895 mlk-1 agcuucguuuccGGAUGCGUu ::|||||| ccucuuuucuuuUUUACGCAc 2 10 65 85 [ce6:V:5056680-5056700:-] 0.5880 125 6 -8.34 -0.2160 MIMAT0000304 cel-miR-248 178895 mlk-1 acucgcAAUAGGCACG---UGCACAUa || ||: | | ||||||| ugucucUUUUCUCUUCAAAACGUGUAc 2 19 202 228 [ce6:V:5056537-5056563:-] 0.5880 145 7 -11.41 -1.0914 MIMAT0000697 cel-miR-355 178895 mlk-1 guaucgaguccgauUUUGUUu |||||| cuucauguguuuucAAACAAu 2 8 85 105 [ce6:V:5056660-5056680:-] 0.5880 120 6 -7.03 -0.1921 MIMAT0004231 cel-miR-796 178895 mlk-1 aaugauuGGAGUUG---AUGUAAGGu ||||||: |||||||| uuuuccuCCUCAAUCCAUACAUUCCg 2 17 142 167 [ce6:V:5056598-5056623:-] 0.5880 159 7 -21.89 -0.9742

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score mlk-1 RAID00524359 cel-miR-229-5p miRNA MIMAT0000284 mlk-1 mRNA 178895 Prediction 0.1828 mlk-1 RAID00844221 cel-miR-236-3p miRNA MIMAT0000291 mlk-1 mRNA 178895 Prediction 0.1828 mlk-1 RAID00934393 cel-miR-796 miRNA MIMAT0004231 mlk-1 mRNA 178895 Prediction 0.2381 mlk-1 RAID01708313 cel-lsy-6-3p miRNA MIMAT0000749 mlk-1 mRNA 178895 Prediction 0.1828 mlk-1 RAID01733365 cel-miR-66-5p miRNA MIMAT0000038 mlk-1 mRNA 178895 Prediction 0.1828 mlk-1 RAID01760619 cel-miR-1-3p miRNA MIMAT0000003 mlk-1 mRNA 178895 Prediction 0.2202 mlk-1 RAID02168931 cel-miR-248 miRNA MIMAT0000304 mlk-1 mRNA 178895 Prediction 0.2381 mlk-1 RAID02564212 cel-miR-65-5p miRNA MIMAT0000037 mlk-1 mRNA 178895 Prediction 0.1828 mlk-1 RAID02732332 cel-miR-77-3p miRNA MIMAT0000049 mlk-1 mRNA 178895 Prediction 0.1828 mlk-1 RAID02780904 cel-miR-355-5p miRNA MIMAT0000697 mlk-1 mRNA 178895 Prediction 0.1828 mlk-1 RAID02995357 cel-miR-239b-5p miRNA MIMAT0000295 mlk-1 mRNA 178895 Prediction 0.1828 mlk-1 RAID03222438 cel-miR-238-3p miRNA MIMAT0000293 mlk-1 mRNA 178895 Prediction 0.1828 mlk-1 RAID03428624 cel-miR-64-5p miRNA MIMAT0000036 mlk-1 mRNA 178895 Prediction 0.1828 mlk-1 RAID03826173 cel-miR-239a-5p miRNA MIMAT0000294 mlk-1 mRNA 178895 Prediction 0.1828 mlk-1 RAID03856300 cel-miR-63-3p miRNA MIMAT0000035 mlk-1 mRNA 178895 Prediction 0.1828 mlk-1 RAID03979486 cel-miR-242 miRNA MIMAT0000298 mlk-1 mRNA 178895 Prediction 0.1828 mlk-1 RAID04044450 cel-miR-85-3p miRNA MIMAT0000058 mlk-1 mRNA 178895 Prediction 0.1828