DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0015094 cel-miR-37* 176295 nhl-1 cgUGGCGUUGCCU---GUGGGUgu |:|| || || |||||| uuAUCGAUACCGAUGCCACCCAac 3 20 67 90 [ce6:III:9147427-9147450:-] 0.5886 130 0 -20.07 -0.1088 MIMAT0015095 cel-miR-42* 176295 nhl-1 gaAGUGGCUUUUUCGUUUGUGGGUg |:|:||| | | : |||||| ugUUAUCGAUACCGAUGCCACCCAa 2 24 65 89 [ce6:III:9147428-9147452:-] 0.5886 131 6 -20.67 -0.1469 MIMAT0000299 cel-miR-243 176295 nhl-1 cuAUAGGGCGGCGCUAGC-AUGGc || ::: |:|: |||| |||| ugUAAUUUUCUGUUAUCGAUACCg 2 22 55 78 [ce6:III:9147439-9147462:-] 0.5886 125 0 -19.85 -1.1068 MIMAT0000324 cel-miR-268 176295 nhl-1 ugguuugacgaaGAUUAAGAACGg || |||||||: guuuuuucgggcCUUAUUCUUGUu 2 13 6 29 [ce6:III:9147488-9147511:-] 0.5886 136 0 -13.24 -0.1270 MIMAT0004235 cel-miR-800 176295 nhl-1 gccgucuGUUAAAGGCUCAAAc | :|||:||||||| aacacuuCUGUUUUCGAGUUUc 2 16 174 195 [ce6:III:9147322-9147343:-] 0.5886 159 7 -14.58 -0.9694 MIMAT0011436 cel-miR-2210* 176295 nhl-1 cacccaucucGUUA-GCUGAAAu || | ||||||| uauuauuaccCAUUACGACUUUc 2 13 143 165 [ce6:III:9147352-9147374:-] 0.5886 143 7 -9.09 -1.0946 MIMAT0011440 cel-miR-2212* 176295 nhl-1 cuaccgAAUAGUU-----UACGGUGaa |||||:| ||||||| uuucugUUAUCGAUACCGAUGCCACcc 3 17 61 87 [ce6:III:9147430-9147456:-] 0.5886 131 0 -15.01 -0.1085 MIMAT0011447 cel-miR-2216 176295 nhl-1 cggAUGGCUGAAUUUUACAcg | :: | ||||||||| ucaUUUUCAAUUAAAAUGUcu 3 19 30 50 [ce6:III:9147467-9147487:-] 0.5886 138 0 -7.40 -0.1042 MIMAT0011456 cel-miR-2218a* 176295 nhl-1 auguuUGAUGU-GAUAAGACCGGa |:||:: :| ||| |||| -----AUUAUGUUUUUUCGGGCCu 2 19 1 19 [ce6:III:9147498-9147516:-] 0.5886 125 0 -14.59 -0.1475 MIMAT0011460 cel-miR-2219 176295 nhl-1 gaAGUCGAAAGGGA-G---CGUGAAGc ||| |||| | | ||||||: uuUCAUCUUUAGGUACAAAGCACUUUu 2 22 101 127 [ce6:III:9147390-9147416:-] 0.5886 131 0 -14.92 -0.1157 MIMAT0011460 cel-miR-2219 176295 nhl-1 gaagucgaaagggagcGUGAAGc |||||| acuuucgguuuuaaaaCACUUCu 2 8 160 182 [ce6:III:9147335-9147357:-] 0.5886 120 6 -16.18 -0.1598 MIMAT0014446 cel-miR-2953-5p 176295 nhl-1 uaAAAGUGCUUGUGAAGACAu |||:| ||||||||||| ggUUUUA-AAACACUUCUGUu 2 20 166 185 [ce6:III:9147332-9147351:-] 0.5886 169 7 -19.11 -1.1750 MIMAT0014446 cel-miR-2953-5p 176295 nhl-1 uaaAAGUGCUUGUGAAGACAu ||::: ||: :|||||| uccUUUGU-AAU-UUUCUGUu 2 19 50 68 [ce6:III:9147449-9147467:-] 0.5886 130 6 -8.30 -0.1106 MIMAT0000038 cel-miR-66 176295 nhl-1 aguguaGGGAUUAG-UCACAGUAc ||:|| || || |||| uucgggCCUUAUUCUUGUUUCAUu 2 18 11 34 [ce6:III:9147483-9147506:-] 0.5886 124 0 -11.67 -0.1027 MIMAT0000058 cel-miR-85 176295 nhl-1 cguGCUGAAAAGUUUAUGAA-ACAu ||: |||| ||| |||| ||| uuuCGG-UUUUAAAACACUUCUGUu 2 22 162 185 [ce6:III:9147332-9147355:-] 0.5886 135 0 -11.27 -1.1103 MIMAT0000058 cel-miR-85 176295 nhl-1 cgugcugaaaaguuuauGAAACAu |||||| uucaauuaaaaugucucCUUUGUa 2 8 35 58 [ce6:III:9147459-9147482:-] 0.5886 120 6 -7.43 -0.3698 MIMAT0000291 cel-miR-236 176295 nhl-1 ucgcaguaauggacugUCAUAAu |||||| acaaagcacuuuuacaAGUAUUa 2 8 115 137 [ce6:III:9147380-9147402:-] 0.5886 120 6 -11.06 -0.3156 MIMAT0000293 cel-miR-238 176295 nhl-1 agacuuaccGUAG--CCUCAUGUUu |||| :|||||| uaguguuuuCAUCUUUAGGUACAAa 2 15 95 119 [ce6:III:9147398-9147422:-] 0.5886 125 6 -12.15 -0.1860 MIMAT0000294 cel-miR-239a 176295 nhl-1 ggUCAUGGA--UACACA-UCAUGUUu |||:::| || | | :|||||| uuAGUGUUUUCAUCUUUAGGUACAAa 2 22 94 119 [ce6:III:9147398-9147423:-] 0.5886 139 6 -13.19 -0.1877 MIMAT0000295 cel-miR-239b 176295 nhl-1 guCAUGAAA--ACACA-UCAUGUUu ||::||| | | | :|||||| uaGUGUUUUCAUCUUUAGGUACAAa 2 21 95 119 [ce6:III:9147398-9147422:-] 0.5886 138 6 -12.85 -0.1860

DNA & RNA Element - miRNAMap Gene Name Mature miRNA Target Start Target End miRNA 3-5 Alignment Target 5-3 nhl-1; F54G8.4 cel-miR-231 177 196 AAGACGGACAACUAGUGCUCGAAU || :||||| ||||:|| -ACU-UCUGUUUU---CGAGUUUC nhl-1; F54G8.4 cel-miR-243 44 80 CUAUAGGGC-----------GGCGCUAGC-AUGGC- ||:||:| |:|: |||| ||||| AAUGUCUCCUUUGUAAUUUUCUGUUAUCGAUACCGA nhl-1; F54G8.4 cel-miR-71 144 168 -AGUGAUGGGUA---CAGAAAGU- |:|:||||||| | |||||: AUUAUUACCCAUUACGACUUUCGG nhl-1; F54G8.4 cel-miR-800 164 196 -GCCGUC----UGU-----UAAAGGCUCAAAC |||: ||| :|||:||||||| UCGGUUUUAAAACACUUCUGUUUUCGAGUUUC nhl-1; F54G8.4 cel-miR-231 172 195 aagacgGACAACUAGUGCUCGAAu || || |: ||||:|| aaaacaCTTCTGTTTTCGAGTTTc nhl-1; F54G8.4 cel-miR-243 55 78 cuAUAGGGCGGCGCUAGC-AUGGC || ::: |:|: |||| ||||| tgTAATTTTCTGTTATCGATACCG nhl-1; F54G8.4 cel-miR-264 72 90 gUAUUGUUGUUGGUGGGcgg ||| |:|: :|||||| gATACCGAT-GCCACCCaac nhl-1; F54G8.4 cel-miR-71 145 166 AGUGAUGGGUA---CAGAAAGu |:|:||||||| | ||||| TTATTACCCATTACGACTTTCg nhl-1; F54G8.4 cel-miR-800 188 195 ------------GCCGUC----UGU-----UAAAGGCUCAAAC |||: ||| :|||:||||||| CAUUACGACUUUCGGUUUUAAAACACUUCUGUUUUCGAGUUUC

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score nhl-1 RAID00518229 cel-lsy-6-3p miRNA MIMAT0000749 nhl-1 mRNA 176295 Prediction 0.1828 nhl-1 RAID00541850 cel-miR-66-5p miRNA MIMAT0000038 nhl-1 mRNA 176295 Prediction 0.1828 nhl-1 RAID01819406 cel-miR-239b-5p miRNA MIMAT0000295 nhl-1 mRNA 176295 Prediction 0.2202 nhl-1 RAID02039619 cel-miR-238-3p miRNA MIMAT0000293 nhl-1 mRNA 176295 Prediction 0.2202 nhl-1 RAID02693230 cel-miR-239a-5p miRNA MIMAT0000294 nhl-1 mRNA 176295 Prediction 0.2202 nhl-1 RAID02870780 cel-miR-85-3p miRNA MIMAT0000058 nhl-1 mRNA 176295 Prediction 0.1828 nhl-1 RAID03750148 cel-miR-236-3p miRNA MIMAT0000291 nhl-1 mRNA 176295 Prediction 0.2202