DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0015093 cel-miR-34* 175654 nhl-2 cccaccgucacuuccAUCGGCa |||||| cuuuuuucucauuucUAGCCGu 2 8 46 67 [ce6:III:4895051-4895072:-] 0.6615 120 6 -10.37 -0.2650 MIMAT0015099 cel-miR-51* 175654 nhl-2 acguggacauggacgAAGGUAc |||||| uuguccccgguguugUUCCAUu 2 8 109 130 [ce6:III:4894988-4895009:-] 0.6615 120 6 -12.99 -0.1659 MIMAT0000027 cel-miR-56* 175654 nhl-2 auguuggguuuuaccUAGGCGGu ||||||| cuucucccuuugcuuAUCCGCCu 2 9 81 103 [ce6:III:4895015-4895037:-] 0.6615 140 7 -18.13 -1.2020 MIMAT0015102 cel-miR-60* 175654 nhl-2 uaAAAUACCGUGAGAAGGUCAa | | | ||:|: |||||| cuUAUUUCCCAUUUAUCCAGUu 2 21 289 310 [ce6:III:4894808-4894829:-] 0.5526 128 6 -13.93 -0.2792 MIMAT0000321 cel-miR-265 175654 nhl-2 uaUGGUGGGAAG--GAGGGAGu :|||||| || ||||||| uuGCCACCCCUCCUCUCCCUCa 2 19 196 217 [ce6:III:4894901-4894922:-] 0.6615 165 7 -31.63 -1.1857 MIMAT0000324 cel-miR-268 175654 nhl-2 ugguuugaCGAAGAUUAAGAACGg ||||:| ||||||: cuauauaaGCUUUU-UUUCUUGUa 2 17 18 40 [ce6:III:4895078-4895100:-] 0.6615 138 0 -13.23 -0.3357 MIMAT0000698 cel-miR-356 175654 nhl-2 acuaAACAAGCGCAACGAGUu || ||: : ||||||| ucucUUUUUUAUUUUGCUCAa 2 18 238 258 [ce6:III:4894860-4894880:-] 0.5601 153 7 -9.34 -1.3163 MIMAT0015240 cel-miR-788* 175654 nhl-2 gcUAAGAUUAGGUAAAGg | |:|| ||||||: ccAGUUUAUACCAUUUUa 2 17 305 322 [ce6:III:4894796-4894813:-] 0.6465 136 0 -6.93 -0.3874 MIMAT0015240 cel-miR-788* 175654 nhl-2 gcuAAGAUUAGGUAAAGg |||| :| |||||| uuuUUCUUGUACAUUUCu 2 16 30 47 [ce6:III:4895071-4895088:-] 0.6615 131 6 -9.33 -0.2982 MIMAT0005031 cel-miR-1018 175654 nhl-2 gacauucaGGUUACUAGAGAGa || || ||||||: uuccccucCCCAU-AUCUCUUa 2 15 152 172 [ce6:III:4894946-4894966:-] 0.6615 132 0 -9.38 -0.1809 MIMAT0005822 cel-miR-1019* 175654 nhl-2 uuuuacuuugagcuuguuACGAGUg |||||| aacgucucuuuuuuauuuUGCUCAa 2 8 234 258 [ce6:III:4894860-4894884:-] 0.5601 120 6 -10.17 -0.4551 MIMAT0006588 cel-miR-1821 175654 nhl-2 gauGGAUUGAUAUUCUGGAGu ::| ::| |:||||||| uucUUUCGUUUUGAGACCUCa 2 19 174 194 [ce6:III:4894924-4894944:-] 0.6615 154 7 -18.58 -1.1017 MIMAT0006590 cel-miR-1823 175654 nhl-2 aaugaggauuugugaAGGUCAu |||||| cuuauuucccauuuaUCCAGUu 2 8 289 310 [ce6:III:4894808-4894829:-] 0.5526 120 6 -14.06 -0.2792 MIMAT0015267 cel-miR-1829a* 175654 nhl-2 auguuuguuAAUCUUCAGGGGaa || | |||||| auccgccuuUUUGUUGUCCCCgg 3 15 96 118 [ce6:III:4895000-4895022:-] 0.6615 126 0 -11.35 -0.1049 MIMAT0006771 cel-miR-1829c 175654 nhl-2 auguuggUAGAACUUAAAG-CGAa | :||||||||| ||| uaagugaAAUUUGAAUUUCAGCUc 2 17 474 497 [ce6:III:4894621-4894644:-] 0.5776 132 0 -14.18 -1.1101 MIMAT0006774 cel-miR-1832 175654 nhl-2 uaguAGCUAAGCG---AGGCGGGu || ||:|| ||||||: cuucUCCCUUUGCUUAUCCGCCUu 2 18 81 104 [ce6:III:4895014-4895037:-] 0.6615 132 0 -17.57 -0.1330 MIMAT0006775 cel-miR-1833 175654 nhl-2 cguguGAAUAAAG--CGUUCGGAGc :|| |||| :||||||| uguuuUUUCUUUCUUAUAAGCCUCa 2 19 419 443 [ce6:III:4894675-4894699:-] 0.5776 153 7 -14.42 -1.2839 MIMAT0011441 cel-miR-2213* 175654 nhl-2 aguuugacacuucucAGGCGGu |||||| uucucccuuugcuuaUCCGCCu 2 8 82 103 [ce6:III:4895015-4895036:-] 0.6615 120 6 -11.98 -0.1554 MIMAT0011447 cel-miR-2216 175654 nhl-2 cgGAUGGCUGAAUUUUACAcg :||:: : ||||||||| uuUUAUUCG-UUAAAAUGUaa 3 20 318 337 [ce6:III:4894781-4894800:-] 0.6465 137 0 -8.94 -0.2899 MIMAT0011449 cel-miR-1832b* 175654 nhl-2 uuucacccggcucgcUAAGCGAc |||||:| aguuuauaccauuuuAUUCGUUa 2 9 307 329 [ce6:III:4894789-4894811:-] 0.6465 124 0 -8.11 -0.2168 MIMAT0011458 cel-miR-2218b* 175654 nhl-2 agagugauguuugauGUUUAAa |||||| uagcguuuuuuuuuuCAAAUUu 2 8 345 366 [ce6:III:4894752-4894773:-] 0.6465 120 6 -7.01 -0.1015 MIMAT0000003 cel-miR-1 175654 nhl-2 auguAUGAAGAA-AUGUAAGGu | :||||| ||||||:| gcuuUUUUUCUUGUACAUUUCu 2 18 26 47 [ce6:III:4895071-4895092:-] 0.6615 148 0 -12.68 -0.1041 MIMAT0000006 cel-miR-35 175654 nhl-2 ugACGAUCAAAGGUGGGCCACu | :| ||| :| ||||||| ccUUUUUGUUGUC-CCCGGUGu 2 21 101 121 [ce6:III:4894997-4895017:-] 0.6615 154 7 -20.97 -0.8975 MIMAT0000007 cel-miR-36 175654 nhl-2 guacgcuUAAAAGUGGGCCACu :|| || ||||||| ccuuuuuGUUGUC-CCCGGUGu 2 16 101 121 [ce6:III:4894997-4895017:-] 0.6615 149 7 -17.67 -0.9076 MIMAT0000008 cel-miR-37 175654 nhl-2 ugacguucACAA-GUGGGCCACu |||| : ||||||| cgccuuuuUGUUGUCCCCGGUGu 2 15 99 121 [ce6:III:4894997-4895019:-] 0.6615 149 7 -18.98 -0.9297 MIMAT0000009 cel-miR-38 175654 nhl-2 ugaGGUCAAA-AAGA-GGGCCACu || ||| || | ||||||| ccgCCUUUUUGUUGUCCCCGGUGu 2 20 98 121 [ce6:III:4894997-4895020:-] 0.6615 153 7 -21.42 -0.9232 MIMAT0000010 cel-miR-39 175654 nhl-2 guucgacuaAAUGUGGGCCACu ||:: ||||||| gccuuuuugUUGUCCCCGGUGu 2 14 100 121 [ce6:III:4894997-4895018:-] 0.6615 149 7 -18.68 -0.9264 MIMAT0000011 cel-miR-40 175654 nhl-2 aaucGACUACAUGUGGGCCACu :|| ||| | ||||||| cuuuUUGUUGU-C-CCCGGUGu 2 19 102 121 [ce6:III:4894997-4895016:-] 0.6615 150 7 -20.66 -0.8942 MIMAT0000012 cel-miR-41 175654 nhl-2 auccacuaAAAAGUGGGCCACu || || ||||||| ccuuuuugUUGUC-CCCGGUGu 2 15 101 121 [ce6:III:4894997-4895017:-] 0.6615 148 7 -17.43 -0.9042 MIMAT0000013 cel-miR-42 175654 nhl-2 agacaucuACAAU-UGGGCCACu ||||: ||||||| cgccuuuuUGUUGUCCCCGGUGu 2 15 99 121 [ce6:III:4894997-4895019:-] 0.6615 149 7 -20.15 -0.9232 MIMAT0000043 cel-miR-71 175654 nhl-2 agugauggguacAGAAAGu |||||| auaucucuuaauUCUUUCg 2 8 163 181 [ce6:III:4894937-4894955:-] 0.6615 120 6 -10.15 -0.1715 MIMAT0000043 cel-miR-71 175654 nhl-2 agugauggguacAGAAAGu |||||| uuuugcucaaauUCUUUCc 2 8 249 267 [ce6:III:4894851-4894869:-] 0.4588 120 6 -11.40 -0.1257 MIMAT0000047 cel-miR-75 175654 nhl-2 acuucggccaaccaUCGAAAuu |||||| ccaauuccuauauaAGCUUUuu 3 9 11 32 [ce6:III:4895086-4895107:-] 0.6615 120 0 -6.37 -0.4592 MIMAT0000047 cel-miR-75 175654 nhl-2 acuucggccaaccaUCGAAAuu |||||| ccuccucucccucaAGCUUUuu 3 9 204 225 [ce6:III:4894893-4894914:-] 0.6615 120 0 -6.37 -0.1087 MIMAT0000051 cel-miR-79 175654 nhl-2 ucgaAACCAUUGGAUCGAAAua || || : |||||| ccaaUUCCUAUAUAAGCUUUuu 3 19 11 32 [ce6:III:4895086-4895107:-] 0.6615 126 0 -7.15 -0.4592 MIMAT0000051 cel-miR-79 175654 nhl-2 ucgaaaccauuGGAUCGAAAua :| |||||| ccuccucucccUCAAGCUUUuu 3 12 204 225 [ce6:III:4894893-4894914:-] 0.6615 123 0 -7.85 -0.1098 MIMAT0000060 cel-miR-87 175654 nhl-2 cguguggacuuUGAAACGAGUg |:|||||||| gucucuuuuuuAUUUUGCUCAa 2 12 237 258 [ce6:III:4894860-4894881:-] 0.5601 151 7 -13.86 -1.3179 MIMAT0000288 cel-miR-233 175654 nhl-2 ggcguguacgcguAACGAGUu ||||||| ucucuuuuuuauuUUGCUCAa 2 9 238 258 [ce6:III:4894860-4894880:-] 0.5601 140 7 -13.89 -1.3179 MIMAT0000300 cel-miR-244 175654 nhl-2 guauggugaaacauguuGGUUUCu |||||| uuuugcucaaauucuuuCCAAAGa 2 8 249 272 [ce6:III:4894846-4894869:-] 0.4588 120 6 -11.71 -0.2377 MIMAT0000700 cel-miR-358 175654 nhl-2 cuGGAACU--GUC-CCUAUGGUua | || | ||| |||||| ccCAUUUAUCCAGUUUAUACCAuu 3 20 296 319 [ce6:III:4894799-4894822:-] 0.5526 121 0 -8.71 -0.1711 MIMAT0000749 cel-lsy-6 175654 nhl-2 gcuuUACGCAGAG-UAUGUUUu | || |:|: ||||||| ccucAAGCUUUUUAAUACAAAa 2 18 213 234 [ce6:III:4894884-4894905:-] 0.6615 152 7 -9.60 -1.2833 MIMAT0004231 cel-miR-796 175654 nhl-2 aaugauuGGAGUUGAUGUAAGGu ::|| ||||||:| agcuuuuUUUCUUGUACAUUUCu 2 17 25 47 [ce6:III:4895071-4895093:-] 0.6615 132 0 -12.48 -0.1072

DNA & RNA Element - miRNAMap Gene Name Mature miRNA Target Start Target End miRNA 3-5 Alignment Target 5-3 nhl-2; CELE_F26F4.7; F26F4.7 cel-miR-264 375 399 GUAUUGUU--GUUGGU---GGGCGG- ||| ||||| |||||| --CAACUUUUCAACCCGCCCCCGCCU nhl-2; CELE_F26F4.7; F26F4.7 cel-miR-265 196 219 UAUGGUGGGAAGG--AGGGAGU- |:|||||| ||| ||||||| UUGCCACCCCUCCUCUCCCUCAA nhl-2; CELE_F26F4.7; F26F4.7 cel-miR-266 248 269 CGAAACG-GUUUCAGAACGGA :||||| |||| |||| || AUUUUGCUCAAAUUCUUUCCA nhl-2; CELE_F26F4.7; F26F4.7 cel-miR-271 90 122 UUACGAAAGGGU-------------GGGCCGCU ||||| :||: |||||:| -UUGCUUAUCCGCCUUUUUGUUGUCCCCGGUGU nhl-2; CELE_F26F4.7; F26F4.7 cel-miR-35 89 122 UGACGAUCAAAGGU-------------GGGCCACU :|||| |||: ||||||| UUUGCUUA--UCCGCCUUUUUGUUGUCCCCGGUGU nhl-2; CELE_F26F4.7; F26F4.7 cel-miR-36 99 122 GUACGCU----UAAAAGUGGGCCACU || :|| || ||||||| --CGCCUUUUUGUUGUC-CCCGGUGU nhl-2; CELE_F26F4.7; F26F4.7 cel-miR-37 105 122 UGACGUUCACAAGUGGGCCACU :||: || || ||||||| UUUGU---UG-UC-CCCGGUGU nhl-2; CELE_F26F4.7; F26F4.7 cel-miR-38 96 122 UGAGGUCAAAAAGA-----GGGCCACU |||: ||||: ||||||| -AUCCGCCUUUUUGUUGUCCCCGGUGU nhl-2; CELE_F26F4.7; F26F4.7 cel-miR-39 107 122 GUUCGACUAAAUGUGGGCCACU |:|| | ||||||| --UGUUGU----C-CCCGGUGU nhl-2; CELE_F26F4.7; F26F4.7 cel-miR-40 105 122 AAUCGACUACAUGUGGGCCACU :|| ||| | ||||||| ---UUUGUUGU-C-CCCGGUGU nhl-2; CELE_F26F4.7; F26F4.7 cel-miR-41 106 122 AUCCACUAAAAAGUGGGCCACU || || ||||||| ---UUGUUG--UC-CCCGGUGU nhl-2; CELE_F26F4.7; F26F4.7 cel-miR-42 106 122 AGACAUCUACAAUU-GGGCCACU ||||: ||||||| -------UUGUUGUCCCCGGUGU nhl-2; CELE_F26F4.7; F26F4.7 cel-miR-793 174 196 -AGACAGAUUGAUUCUAUGGAGU- ||| || :|:||| ||||| UUCUUUCGUUUUGAGA--CCUCAU nhl-2; CELE_F26F4.7; F26F4.7 cel-miR-87 234 259 CGUGUGGACUU----UGAAACGAGUG ||::|| |:|||||||| -AACGUCUCUUUUUUAUUUUGCUCAA nhl-2; CELE_F26F4.7; F26F4.7 cel-miR-264 378 397 GUAUUGUUGUUGGUGGGCGG | | |||| | |||||| CTTTTCAACCCGCCCCCGCC nhl-2; CELE_F26F4.7; F26F4.7 cel-miR-265 196 217 uAUGGUGGGAAG--GAGGGAGU |:|||||| || |||||||| tTGCCACCCCTCCTCTCCCTCA nhl-2; CELE_F26F4.7; F26F4.7 cel-miR-271 105 121 uuACGAAAGGGUGGGCCGCu ||:| || |||||:| ttTGTTGTC---CCCGGTGt nhl-2; CELE_F26F4.7; F26F4.7 cel-miR-35 101 121 uGACGAUCAAAGGUGGGCCACu || :| ||| :| ||||||| cCTTTTTGTTGTC-CCCGGTGt nhl-2; CELE_F26F4.7; F26F4.7 cel-miR-36 95 121 gUACGCUUAAAAGU-----GGGCCACu || || ||||:: ||||||| tATCCGCCTTTTTGTTGTCCCCGGTGt nhl-2; CELE_F26F4.7; F26F4.7 cel-miR-37 99 121 ugacguucACAA-GUGGGCCACu |||| : ||||||| cgccttttTGTTGTCCCCGGTGt nhl-2; CELE_F26F4.7; F26F4.7 cel-miR-38 98 121 uGAGGUCAAA-AAGA-GGGCCACu | || ||| || | ||||||| cCGCCTTTTTGTTGTCCCCGGTGt nhl-2; CELE_F26F4.7; F26F4.7 cel-miR-39 100 121 guucgacuaAAUGUGGGCCACu ||:: ||||||| gcctttttgTTGTCCCCGGTGt nhl-2; CELE_F26F4.7; F26F4.7 cel-miR-40 102 121 aaucgACUACAUGUGGGCCACu || ||| | ||||||| cttttTGTTGT-C-CCCGGTGt nhl-2; CELE_F26F4.7; F26F4.7 cel-miR-41 101 121 auccacuaAAAAGUGGGCCACu || || ||||||| cctttttgTTGTC-CCCGGTGt nhl-2; CELE_F26F4.7; F26F4.7 cel-miR-42 99 121 agacaucuACAAU-UGGGCCACu ||||: ||||||| cgccttttTGTTGTCCCCGGTGt nhl-2; CELE_F26F4.7; F26F4.7 cel-miR-56* 81 103 auguuggguuuuaccUAGGCGGu ||||||| cttctccctttgcttATCCGCCt nhl-2; CELE_F26F4.7; F26F4.7 cel-miR-793 175 194 AGACAGAUUGAUUCUAUGGAGU ||| || ::| || |||||| TCTTTC--GTTTTGAGACCTCA nhl-2; CELE_F26F4.7; F26F4.7 cel-miR-265 210 217 U---------------------AUGGUGGGAA--GGAGGGAGU |:|||||| :|||||||| UCUUUCGUUUUGAGACCUCAUUUGCCACCCCUCCUCUCCCUCAA nhl-2; CELE_F26F4.7; F26F4.7 cel-miR-35 114 121 U----------GACGAUCAAAGGU-------------GGGCCACU :|||| |||: ||||||| UCCUUCUCCCUUUGCUUA--UCCGCCUUUUUGUUGUCCCCGGUGU nhl-2; CELE_F26F4.7; F26F4.7 cel-miR-36 114 121 GUACGCU----------------------UAAAAGUGGGCCACU :|| || ||||||| UCCUUCUCCCUUUGCUUAUCCGCCUUUUUGUUGUC-CCCGGUGU nhl-2; CELE_F26F4.7; F26F4.7 cel-miR-37 114 121 U--------------------------GACGUUCACAAGUGGGCCACU :||: ||| | ||||||| UCCUUCUCCCUUUGCUUAUCCGCCUUUUUGU---UGU-C-CCCGGUGU nhl-2; CELE_F26F4.7; F26F4.7 cel-miR-38 114 121 UG----------------AGGUCAAAAAGA-----GGGCCACU |||: ||||: ||||||| UCCUUCUCCCUUUGCUUAUCCGCCUUUUUGUUGUCCCCGGUGU nhl-2; CELE_F26F4.7; F26F4.7 cel-miR-39 114 121 GUU--------------------------CGACUAAAUGUGGGCCACU |:|| | ||||||| UCCUUCUCCCUUUGCUUAUCCGCCUUUUUGUUGU----C-CCCGGUGU nhl-2; CELE_F26F4.7; F26F4.7 cel-miR-40 114 121 AAUC-----------------------GACUACAUGUGGGCCACU :|| ||| | ||||||| UCCUUCUCCCUUUGCUUAUCCGCCUUUUUGUUGU-C-CCCGGUGU nhl-2; CELE_F26F4.7; F26F4.7 cel-miR-41 114 121 AUCCACUAAAA----------------------AGUGGGCCACU || ||||||| UCCUUCUCCCUUUGCUUAUCCGCCUUUUUGUUGUC-CCCGGUGU nhl-2; CELE_F26F4.7; F26F4.7 cel-miR-42 114 121 AGACAUCU--------------------ACAAUU-GGGCCACU ||||: ||||||| UCCUUCUCCCUUUGCUUAUCCGCCUUUUUGUUGUCCCCGGUGU nhl-2; CELE_F26F4.7; F26F4.7 cel-miR-56* 96 103 AUGUU--------------------GGGUUUUACCUAGGCGGU ||| ||||||| UAGCCGUCUUCUUUUUUUUCCUUCUCCCUUUGCUUAUCCGCCU nhl-2; CELE_F26F4.7; F26F4.7 cel-miR-87 251 258 CG-----------------UGUGGACUU----UGAAACGAGUG || || |:|||||||| CAAGCUUUUUAAUACAAAAACGUCUCUUUUUUAUUUUGCUCAA

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score nhl-2 RAID00290157 cel-miR-796 miRNA MIMAT0004231 nhl-2 mRNA 175654 Prediction 0.1828 nhl-2 RAID00381735 cel-miR-233-3p miRNA MIMAT0000288 nhl-2 mRNA 175654 Prediction 0.1828 nhl-2 RAID00421061 cel-miR-39-3p miRNA MIMAT0000010 nhl-2 mRNA 175654 Prediction 0.2202 nhl-2 RAID00610424 cel-miR-36-3p miRNA MIMAT0000007 nhl-2 mRNA 175654 Prediction 0.2202 nhl-2 RAID00752090 cel-miR-358-3p miRNA MIMAT0000700 nhl-2 mRNA 175654 Prediction 0.1828 nhl-2 RAID01065569 cel-lsy-6-3p miRNA MIMAT0000749 nhl-2 mRNA 175654 Prediction 0.2202 nhl-2 RAID01134617 cel-miR-1-3p miRNA MIMAT0000003 nhl-2 mRNA 175654 Prediction 0.1828 nhl-2 RAID01140019 cel-miR-244-5p miRNA MIMAT0000300 nhl-2 mRNA 175654 Prediction 0.2202 nhl-2 RAID01492608 cel-miR-35-3p miRNA MIMAT0000006 nhl-2 mRNA 175654 Prediction 0.2202 nhl-2 RAID02082033 cel-miR-77-3p miRNA MIMAT0000049 nhl-2 mRNA 175654 Prediction 0.1828 nhl-2 RAID02183152 cel-miR-42-3p miRNA MIMAT0000013 nhl-2 mRNA 175654 Prediction 0.2202 nhl-2 RAID02724586 cel-miR-79-3p miRNA MIMAT0000051 nhl-2 mRNA 175654 Prediction 0.1828 nhl-2 RAID02993400 cel-miR-38-3p miRNA MIMAT0000009 nhl-2 mRNA 175654 Prediction 0.2202 nhl-2 RAID03030837 cel-miR-41-3p miRNA MIMAT0000012 nhl-2 mRNA 175654 Prediction 0.2202 nhl-2 RAID03488002 cel-miR-71-5p miRNA MIMAT0000043 nhl-2 mRNA 175654 Prediction 0.1828 nhl-2 RAID03767391 cel-miR-75-3p miRNA MIMAT0000047 nhl-2 mRNA 175654 Prediction 0.1828 nhl-2 RAID03857503 cel-miR-37-3p miRNA MIMAT0000008 nhl-2 mRNA 175654 Prediction 0.2202 nhl-2 RAID03896616 cel-miR-40-3p miRNA MIMAT0000011 nhl-2 mRNA 175654 Prediction 0.2202 nhl-2 RAID04047954 cel-miR-87-3p miRNA MIMAT0000060 nhl-2 mRNA 175654 Prediction 0.1828