DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0015102 cel-miR-60* 172864 npp-17 uaaaauACCGUGAGAAGGUCAa | || | :| ||||| ------UUGCUCAUUACCAGUa 2 17 1 16 [ce6:I:10029718-10029733:+] 0.6740 120 0 -10.22 -0.1450 MIMAT0015115 cel-miR-239b* 172864 npp-17 aaAAACGUGUGGUGUUUU-CACg ||||:|| : | |||| ||| ugUUUGUACCUAAAAAAACGUGa 2 21 149 171 [ce6:I:10029866-10029888:+] 0.5228 132 0 -13.52 -1.0539 MIMAT0000321 cel-miR-265 172864 npp-17 uauggugggaagGAGGGAGu ||||||: uuuuauuuauaaCUCCCUUu 2 9 54 73 [ce6:I:10029771-10029790:+] 0.5228 124 0 -13.07 -0.2893 MIMAT0000321 cel-miR-265 172864 npp-17 uauggugggaaggAGGGAGu |||||| ucaauaaaaaaagUCCCUCg 2 8 310 329 [ce6:I:10030027-10030046:+] 0.5228 120 6 -12.36 -0.5841 MIMAT0000698 cel-miR-356 172864 npp-17 acuaaacaagcgcAACGAGUu ||||||| -------------UUGCUCAu 2 9 1 8 [ce6:I:10029718-10029725:+] 0.6740 140 7 -7.61 -0.7098 MIMAT0006590 cel-miR-1823 172864 npp-17 aaugagGAUUUGUGAAGGUCAu :|: ||:| ||||| ------UUGCUCAUUACCAGUa 2 17 1 16 [ce6:I:10029718-10029733:+] 0.6740 120 0 -13.34 -0.1450 MIMAT0011425 cel-miR-2207 172864 npp-17 gaAUAUGUGUCAGAGUUAAGUGu | | :|: || :| ||||| uaUUUUUAUUGUGGUACUUCACu 2 22 15 37 [ce6:I:10029732-10029754:+] 0.5984 121 0 -7.63 -0.1407 MIMAT0000059 cel-miR-86 172864 npp-17 cuGACACCGUUUCGUAAGUGAau :|||||:| | |||||| uaUUGUGGUA---C-UUCACUau 3 22 21 39 [ce6:I:10029738-10029756:+] 0.5984 131 0 -16.30 -0.1022 MIMAT0000060 cel-miR-87 172864 npp-17 cguguggacuuugaAACGAGUg ||||||| --------------UUGCUCAu 2 9 1 8 [ce6:I:10029718-10029725:+] 0.6740 140 7 -8.87 -0.7098 MIMAT0000288 cel-miR-233 172864 npp-17 ggcguguacgcguAACGAGUu ||||||| -------------UUGCUCAu 2 9 1 8 [ce6:I:10029718-10029725:+] 0.6740 140 7 -12.16 -0.7098 MIMAT0000291 cel-miR-236 172864 npp-17 ucgcAGUAAUGGACUGUCAUAAu ||||||| ||||||| uugcUCAUUAC----CAGUAUUu 2 20 1 19 [ce6:I:10029718-10029736:+] 0.6740 154 7 -16.03 -1.1830 MIMAT0000701 cel-miR-359 172864 npp-17 aagcagucucuuucUGGUCAcu |||||| -----uugcucauuACCAGUau 3 9 1 17 [ce6:I:10029718-10029734:+] 0.6740 120 0 -7.19 -0.3138 MIMAT0004220 cel-miR-785 172864 npp-17 agAUGUGUUUUGUUAAGUGAau ||: :: :::| |||||| uuUAU-UGUGGUACUUCACUau 3 21 19 39 [ce6:I:10029736-10029756:+] 0.5984 126 0 -7.15 -0.1127

DNA & RNA Element - miRNAMap Gene Name Mature miRNA Target Start Target End miRNA 3-5 Alignment Target 5-3 rae-1; npp-17; F10G8.3 cel-miR-231 261 289 -AAGACGGA---CAACUAGUGC-UCGAAU ||| || |||| ||||| :|:| AUUCAGCAUCCAGUUGUUCACGUGGUUC- rae-1; npp-17; F10G8.3 cel-miR-233 195 217 -GGCGUGUACGCGUAACGAGUU- |||| |: |::|| ||||| UCCGC-CGAAAGUGUUUCUCAAG rae-1; npp-17; F10G8.3 cel-miR-236 2 20 UCGCAGUAAUGGACUGUCAUAAU || |||||||| |||||| UGC-UCAUUACC----AGUAUUU rae-1; npp-17; F10G8.3 cel-miR-239b 11 33 -GUCAUGAAAAC-ACAUCAUGUUU |||||:|||| |||:|||| CCAGUAUUUUUAUUGUGGUACU-- rae-1; npp-17; F10G8.3 cel-miR-243 122 160 CUAUAGGGCGGCG---------------CU---AGCAUGGC ||:|| |||: || |:||||| --AAUUCC-CCGUUCAUUCAGAAUCUCAGAUGUUUGUACCU rae-1; npp-17; F10G8.3 cel-miR-248 264 286 ACUCGCAAUAGG----CACGUGCACAUA ||| |||| || |||||| -CAGC---AUCCAGUUGUUCACGUGG-- rae-1; npp-17; F10G8.3 cel-miR-252 7 43 -AAUGG-----------ACGCCGUGA--UGAUGAAUA ||||| ||:||:||| ||||:|| AUUACCAGUAUUUUUAUUGUGGUACUUCACUAUUUU- rae-1; npp-17; F10G8.3 cel-miR-264 279 297 GUAUUGUUGUUGGUGGGCGG- ||: : :||||||:| ---CACGUGGUUCACCCGUCA rae-1; npp-17; F10G8.3 cel-miR-267 265 287 ACGUC-GUCUGUGAAGUGC-CC- ||| ||| : |||||| || AGCAUCCAG-UUGUUCACGUGGU rae-1; npp-17; F10G8.3 cel-miR-271 230 255 -UUACGAAAGGGUG---GGCCGCU- |||| ||||| :|||||| CAAUGAACCCCCACGUUUCGGCGAA rae-1; npp-17; F10G8.3 cel-miR-36 281 295 GUACGCUUAAAAGUGGGCCACU |:|: |||||||| --CGUGG---UUCACCCGU--- rae-1; npp-17; F10G8.3 cel-miR-37 265 288 UGACGU---UC-ACAAGUGGGCCACU ||| || ||||||| :||| --AGCAUCCAGUUGUUCACGUGGUU- rae-1; npp-17; F10G8.3 cel-miR-49 270 290 AGACGUCG--AAGAGCACCACGAA |||: ||| |||||| | ---CCAGUUGUUCACGUGGUUCA- rae-1; npp-17; F10G8.3 cel-miR-56* 155 203 AUGUUGGGUUUU------------ACCU------------ AGGCGGU |||:|||| |||| ||||||: ---UACCUAAAAAAACGUGAAGCUUGGAUGACAGGAGAAUUUUUCCGCCGA rae-1; npp-17; F10G8.3 cel-miR-57 165 188 UGUGUG--UCGAGCUAGAUGUCCCAU ||: ||||:|: ||||| -AACGUGAAGCUUGGAUGACAGGA-- rae-1; npp-17; F10G8.3 cel-miR-76 211 238 -AGUUCCGAAGUAGUU----GUUGCUU- |||| |||||||||| |||:||| CUCAA-GCUUCAUCAAUUUUCAAUGAAC rae-1; npp-17; F10G8.3 cel-miR-86 21 39 CUGACACCGUUUCGUAAGUGAAU |:|||||:| |||||| UAUUGUGGUAC----UUCACUA- rae-1; npp-17; F10G8.3 cel-miR-231 262 288 AAGAC---GGACAACUAGUGCUCGAAu ||| | || |||| ||||| | || TTCAGCATCCAGTTGTTCACGTGGTTc rae-1; npp-17; F10G8.3 cel-miR-233 196 215 GGCGUGUACGCGUAACGAGUU |||| |: |::|| ||||| CCGC-CGAAAGTGTTTCTCAA rae-1; npp-17; F10G8.3 cel-miR-239b 12 34 GUCAUGAAAA-CACAUCAUGuuu |||||:|||| |||:|||| CAGTATTTTTATTGTGGTACttc rae-1; npp-17; F10G8.3 cel-miR-243 139 159 CUAUAGGG-CGGCGCUAGCAUGGc || |||:| | :|: |:||||| GA-ATCTCAGATGT--TTGTACCt rae-1; npp-17; F10G8.3 cel-miR-248 263 287 ACUCGCAAUAGG----CACGUGCACaua | ||| |||| || |||||| TCAGC---ATCCAGTTGTTCACGTGgtt rae-1; npp-17; F10G8.3 cel-miR-252 20 43 AAUGGACGCCGUGA--UGAUGAAua ||| :||:||:||| ||||:|| TTA-TTGTGGTACTTCACTATTTtc rae-1; npp-17; F10G8.3 cel-miR-264 276 295 guAUUGUUGUUGGUGGGCGG | ||: : :||||||:| gtTCACGTGGTTCACCCGTC rae-1; npp-17; F10G8.3 cel-miR-267 262 284 ACGUCGUCUGU---GAAGUGCcc | ||||| || |||||| TTCAGCATCCAGTTGTTCACGtg rae-1; npp-17; F10G8.3 cel-miR-271 231 253 UUACGAAAGGGU---GGGCCGCU |||| |||| ::|||||| AATGAACCCCCACGTTTCGGCGA rae-1; npp-17; F10G8.3 cel-miR-36 279 297 GUACGCUUAAAAGUGGGCcacu || |:|: |||||||| CACGTGG---TTCACCCGtcag rae-1; npp-17; F10G8.3 cel-miR-37 275 297 ugACGUUCA-CAAGUGGGCcacu | || || ||||||||| tgTTCACGTGGTTCACCCGtcag rae-1; npp-17; F10G8.3 cel-miR-49 263 290 AGACGUCG------AAGAGCACCACGaa || ||| | ||| |||||| | TCAGCATCCAGTTGTTCACGTGGTTCac rae-1; npp-17; F10G8.3 cel-miR-56* 179 201 auguuggguuuuaccuAGGCGGu |||||| atgacaggagaattttTCCGCCg rae-1; npp-17; F10G8.3 cel-miR-57 166 189 UGUGUGUCGAGCUAGAUGUCCcau ||::: ||||:|: : ||||| ACGTGAAGCTTGGATGACAGGaga rae-1; npp-17; F10G8.3 cel-miR-76 212 236 AGUUCCGAAGUAGU----UGUUGCUU |||| ||||||||| |||:||| TCAA-GCTTCATCAATTTTCAATGAA rae-1; npp-17; F10G8.3 cel-miR-86 21 39 cUGACACCGUUUCGUAAGUGAau |:|||||:| | |||||| tATTGTGGTA---C-TTCACTat

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score rae-1 RAID00470651 cel-miR-87-3p miRNA MIMAT0000060 rae-1 mRNA 172864 Prediction 0.1828 rae-1 RAID00694704 cel-miR-236-3p miRNA MIMAT0000291 rae-1 mRNA 172864 Prediction 0.1828 rae-1 RAID00918824 cel-miR-233-3p miRNA MIMAT0000288 rae-1 mRNA 172864 Prediction 0.1828 rae-1 RAID01141396 cel-miR-785-3p miRNA MIMAT0004220 rae-1 mRNA 172864 Prediction 0.1828 rae-1 RAID03457816 cel-miR-86-5p miRNA MIMAT0000059 rae-1 mRNA 172864 Prediction 0.1828 rae-1 RAID03803909 cel-miR-359 miRNA MIMAT0000701 rae-1 mRNA 172864 Prediction 0.1828