DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0015091 cel-let-7* 172264 stam-1 cauuccaucuuuuaacguAUCAAGu |||||| ccuccuugaaucuguaacUAGUUCc 2 8 31 55 [ce6:I:5902210-5902234:-] 0.6260 120 6 -7.36 -0.2742 MIMAT0015091 cel-let-7* 172264 stam-1 cauuccaucuuuuaacguAUCAAGu |||||| ccuccuugaaucuguaacUAGUUCc 2 8 284 308 [ce6:I:5902210-5902234:-] 0.6260 120 6 -7.36 -0.2405 MIMAT0015097 cel-miR-47* 172264 stam-1 ugacaGUUAUCUGACGAG--AGAa ||||:| |||||| ||| aacaaCAAUGGCCUGCUCCGUCUu 2 18 210 233 [ce6:I:5902285-5902308:-] 0.6260 121 0 -19.57 -0.4773 MIMAT0015099 cel-miR-51* 172264 stam-1 acgUGGACAUGGACGAAGGUAc |:||||| || |||||| ugaAUCUGUAACUAGUUCCAUu 2 20 37 58 [ce6:I:5902207-5902228:-] 0.6260 143 6 -17.48 -0.1732 MIMAT0015099 cel-miR-51* 172264 stam-1 acgUGGACAUGGACGAAGGUAc |:||||| || |||||| ugaAUCUGUAACUAGUUCCAUu 2 20 290 311 [ce6:I:5902207-5902228:-] 0.6260 143 6 -17.48 -0.1490 MIMAT0000313 cel-miR-258 172264 stam-1 uuuuccuaAGGAGAGUUUUgg || :|||||| aaugccuaUCAAUUCAAAAaa 3 14 34 54 [ce6:I:5902464-5902484:-] 0.5934 125 0 -8.01 -0.1395 MIMAT0000323 cel-miR-267 172264 stam-1 acGUCGUCUGUGAAGUGCCc || : | :|||||||| uuCAUUCUAAGCUUCACGGu 2 19 14 33 [ce6:I:5902485-5902504:-] 0.5607 150 7 -15.21 -1.1789 MIMAT0000328 cel-miR-272 172264 stam-1 guuUGUGGGUACGGAUGu ||: : |||||||: uucACGGUAAUGCCUAUc 2 16 26 43 [ce6:I:5902475-5902492:-] 0.5934 135 0 -13.13 -0.1890 MIMAT0006775 cel-miR-1833 172264 stam-1 cgugugaauaaagcguUCGGAGc |||||| ccugcuccgucuucacAGCCUCa 2 8 221 243 [ce6:I:5902275-5902297:-] 0.6260 120 6 -12.32 -0.2371 MIMAT0011425 cel-miR-2207 172264 stam-1 gaAUAUGUGUCAGAGUUAAGUgu || |::| | |||||||| ggUA-AUGC-CUAUCAAUUCAaa 3 22 31 51 [ce6:I:5902467-5902487:-] 0.5934 133 0 -11.34 -0.1694 MIMAT0011450 cel-miR-1832b 172264 stam-1 uagucgcUUA-GCGAGACGGGUGa |:| ||| ||||||| caaccacAGUACGC-AUGCCCACc 2 17 158 180 [ce6:I:5902338-5902360:-] 0.6260 145 7 -21.34 -0.4905 MIMAT0011460 cel-miR-2219 172264 stam-1 gaagucgaaagggagcGUGAAGc |||||| ccauugauauugugauCACUUCu 2 8 54 76 [ce6:I:5902189-5902211:-] 0.6260 120 6 -6.67 -0.1963 MIMAT0011460 cel-miR-2219 172264 stam-1 gaagucgaaagggagcGUGAAGc |||||| ccauugauauugugauCACUUCu 2 8 307 329 [ce6:I:5902189-5902211:-] 0.6260 120 6 -6.67 -0.1737 MIMAT0011463 cel-miR-2221 172264 stam-1 ugaUCGCCAGACCA-UAGUGAAc | :| | | || ||||||| uccAUUGAUAUUGUGAUCACUUc 2 20 53 75 [ce6:I:5902190-5902212:-] 0.6260 150 7 -9.06 -0.9473 MIMAT0011463 cel-miR-2221 172264 stam-1 ugaUCGCCAGACCA-UAGUGAAc | :| | | || ||||||| uccAUUGAUAUUGUGAUCACUUc 2 20 306 328 [ce6:I:5902190-5902212:-] 0.6260 150 7 -9.06 -0.8986 MIMAT0014447 cel-miR-2953-3p 172264 stam-1 cgaugucuucucgauCACUAGu |||||| aguuccauugauauuGUGAUCa 2 8 50 71 [ce6:I:5902194-5902215:-] 0.6260 120 6 -11.96 -0.2985 MIMAT0014447 cel-miR-2953-3p 172264 stam-1 cgaugucuucucgauCACUAGu |||||| aguuccauugauauuGUGAUCa 2 8 303 324 [ce6:I:5902194-5902215:-] 0.6260 120 6 -11.96 -0.2608 MIMAT0000004 cel-miR-2 172264 stam-1 cguguaguuucgaccGACACUAu :|||||| cuaguuccauugauaUUGUGAUc 2 9 48 70 [ce6:I:5902195-5902217:-] 0.6260 124 6 -7.99 -0.1660 MIMAT0000004 cel-miR-2 172264 stam-1 cguguaguuucgaccGACACUAu :|||||| cuaguuccauugauaUUGUGAUc 2 9 301 323 [ce6:I:5902195-5902217:-] 0.6260 124 6 -7.99 -0.1460 MIMAT0000014 cel-miR-43 172264 stam-1 cgcugucGUUCAUU-UGACACUAu | | |:| |:|||||| acuaguuCCAUUGAUAUUGUGAUc 2 17 47 70 [ce6:I:5902195-5902218:-] 0.6260 135 6 -8.86 -0.1660 MIMAT0000014 cel-miR-43 172264 stam-1 cgcugucGUUCAUU-UGACACUAu | | |:| |:|||||| acuaguuCCAUUGAUAUUGUGAUc 2 17 300 323 [ce6:I:5902195-5902218:-] 0.6260 135 6 -8.86 -0.1460 MIMAT0000031 cel-miR-59 172264 stam-1 guAGUAGGACUAUUUGCUAAGCu |:||::| | ||||||| acUUAUUUUUCU---CGAUUCGc 2 22 78 97 [ce6:I:5902168-5902187:-] 0.6260 145 7 -13.48 -0.8147 MIMAT0000031 cel-miR-59 172264 stam-1 guAGUAGGACUAUUUGCUAAGCu |:||::| | ||||||| acUUAUUUUUCU---CGAUUCGc 2 22 331 350 [ce6:I:5902168-5902187:-] 0.6260 145 7 -13.48 -0.8956 MIMAT0000039 cel-miR-67 172264 stam-1 agaugaGAAAGAUCCUCCAACACu ||||:|: |||||| ------CUUUUUGAUUUGUUGUGa 2 19 1 18 [ce6:I:5902247-5902264:-] 0.6260 126 6 -13.76 -0.1118 MIMAT0000039 cel-miR-67 172264 stam-1 agAUGA--GAAAGAUCCUCCAACACu ||:| ||||:|: |||||| aaUAUUAACUUUUUGAUUUGUUGUGa 2 23 246 271 [ce6:I:5902247-5902272:-] 0.6260 129 6 -15.62 -0.3073 MIMAT0000042 cel-miR-70 172264 stam-1 uaccuuugugguugcuGCAUAAu |||||| uaucaauucaaaaaauCGUAUUu 2 8 40 62 [ce6:I:5902456-5902478:-] 0.5934 120 6 -8.47 -0.1314 MIMAT0000059 cel-miR-86 172264 stam-1 cugacACCGUUUCGUAAGUGAAu || :| |:: |||||| uccauUGAUAUUGUGAUCACUUc 2 19 53 75 [ce6:I:5902190-5902212:-] 0.6260 122 6 -8.73 -0.1505 MIMAT0000059 cel-miR-86 172264 stam-1 cugacACCGUUUCGUAAGUGAAu || :| |:: |||||| uccauUGAUAUUGUGAUCACUUc 2 19 306 328 [ce6:I:5902190-5902212:-] 0.6260 122 6 -8.73 -0.1301 MIMAT0000061 cel-miR-90 172264 stam-1 ucccCGUAAGUUUGUUG-UAUAGu ||| | ||||| ||||| aacaGCAGCC--ACAACAAUAUCc 2 20 108 129 [ce6:I:5902389-5902410:-] 0.6260 120 0 -11.15 -0.6674 MIMAT0000306 cel-miR-250 172264 stam-1 acGGUUGUCAACUGACACUAa :| |: | | |:|||||| guUCCAUUGAU-AUUGUGAUc 2 20 51 70 [ce6:I:5902195-5902214:-] 0.6260 133 6 -11.72 -0.1660 MIMAT0000306 cel-miR-250 172264 stam-1 acGGUUGUCAACUGACACUAa :| |: | | |:|||||| guUCCAUUGAU-AUUGUGAUc 2 20 304 323 [ce6:I:5902195-5902214:-] 0.6260 133 6 -11.72 -0.1460 MIMAT0000308 cel-miR-252 172264 stam-1 aaugGACGC-CGUGAUGA-UGAAUa :||:| |||| || ||||| gauaUUGUGAUCACUUCUAACUUAu 2 20 59 83 [ce6:I:5902182-5902206:-] 0.6260 126 0 -16.39 -1.0338 MIMAT0000308 cel-miR-252 172264 stam-1 aaugGACGC-CGUGAUGA-UGAAUa :||:| |||| || ||||| gauaUUGUGAUCACUUCUAACUUAu 2 20 312 336 [ce6:I:5902182-5902206:-] 0.6260 126 0 -16.39 -1.0144 MIMAT0004220 cel-miR-785 172264 stam-1 agauguguuuuguuaAGUGAAu |||||| ccauugauauugugaUCACUUc 2 8 54 75 [ce6:I:5902190-5902211:-] 0.6260 120 6 -5.65 -0.1505 MIMAT0004220 cel-miR-785 172264 stam-1 agauguguuuuguuaAGUGAAu |||||| ccauugauauugugaUCACUUc 2 8 307 328 [ce6:I:5902190-5902211:-] 0.6260 120 6 -5.65 -0.1301 MIMAT0004232 cel-miR-797 172264 stam-1 agAAGAGUAACACUAACGACACUAu ||| ||| ||| | :|||||| agUUC-CAU--UGA-UAUUGUGAUc 2 24 50 70 [ce6:I:5902195-5902215:-] 0.6260 140 6 -13.48 -0.1645 MIMAT0004232 cel-miR-797 172264 stam-1 agAAGAGUAACACUAACGACACUAu ||| ||| ||| | :|||||| agUUC-CAU--UGA-UAUUGUGAUc 2 24 303 323 [ce6:I:5902195-5902215:-] 0.6260 140 6 -13.48 -0.1446

DNA & RNA Element - miRNAMap Gene Name Mature miRNA Target Start Target End miRNA 3-5 Alignment Target 5-3 stam-1; pqn-19; C34G6.7 cel-let-7 106 131 UUGAUAUGUUGGA---UGAUGGAGU- ||:||:|::|| :|| ||||: -UCUGUAUAGUCUUUUGCUUCCUCGA stam-1; pqn-19; C34G6.7 cel-miR-228 33 60 -GGCACUUAAGUACG----UCACGGUAA- || ||||| | ||: ||| ||||| UCCUUGAAU-C-UGUAACUAGUUCCAUUG stam-1; pqn-19; C34G6.7 cel-miR-241 84 105 AGUAAAGAGC---GUGGAUGGAGU- ||||||| |:|| ||| |: --UUUUCUCGAUUCGCC-ACC-CGU stam-1; pqn-19; C34G6.7 cel-miR-252 62 85 AAUGGACGCC-GUGAUGA-UGAAUA- :||:| |||| || |||||| ---AUUGUGAUCACUUCUAACUUAUU stam-1; pqn-19; C34G6.7 cel-miR-256 109 128 -AUGUCAGAAGAUACGUAAGGU ||:||||||: ||| |||| GUAUAGUCUUU--UGC-UUCCU stam-1; pqn-19; C34G6.7 cel-miR-264 89 107 GUAUUGUUGU-UGGUGGGCGG- |:|: :|||||||:: ----UCGAUUCGCCACCCGUUU stam-1; pqn-19; C34G6.7 cel-miR-265 18 41 -UAUGGUGG-GAAGGAGGGAGU- |||:|||| :|||||||:| | AAUAUCACCUUUUCCUCCUUGAA stam-1; pqn-19; C34G6.7 cel-miR-48 93 131 -AGCG-----UAGAUGAC---UCGGAU------GGAGU- |||| :|:| ||| ||:|| ||||: UUCGCCACCCGUUU-CUGUAUAGUCUUUUGCUUCCUCGA stam-1; pqn-19; C34G6.7 cel-miR-56* 75 101 AUGUUGGGUUUUAC---CUAGGCGGU- :|||::| |||:||||| -CUAACUUAUUUUUCUCGAUUCGCCAC stam-1; pqn-19; C34G6.7 cel-miR-71 93 122 -AGUGAUGGGUA---------CAGAAAGU ||:| ||||:| ||||||: UUCGCCACCCGUUUCUGUAUAGUCUUUUG stam-1; pqn-19; C34G6.7 cel-let-7 105 129 uuGAUAUGUUGG---AUGAUGGAGu ||:||:|::| |:|| |||| ttCTGTATAGTCTTTTGCTTCCTCg stam-1; pqn-19; C34G6.7 cel-miR-228 34 58 GGCACUUAAGUA--CGUCACGGUAA || ||||| ::| :||| ||||| CCTTGAATCTGTAACTAGTTCCATT stam-1; pqn-19; C34G6.7 cel-miR-241 101 129 aGUAAAGAGCGU----G-----GAUGGAGu |:||||| |:| | || |||| cCGTTTCT-GTATAGTCTTTTGCTTCCTCg stam-1; pqn-19; C34G6.7 cel-miR-252 59 83 aauggACGC-CGUGAUGA-UGAAUA ||:| |||| || |||||| gatatTGTGATCACTTCTAACTTAT stam-1; pqn-19; C34G6.7 cel-miR-256 110 127 AUGUCAGAAGAUACGUAAGGu ||:||||||: ||| |||| TATAGTCTTT--TGC-TTCCt stam-1; pqn-19; C34G6.7 cel-miR-264 86 105 guauuguuguuGGUGGGCgg ||||||| ttctcgattcgCCACCCGtt stam-1; pqn-19; C34G6.7 cel-miR-265 19 39 UAUGGUGG-GAAGGAGGGAgu |||:|||| :|||||||:| ATATCACCTTTTCCTCCTTga stam-1; pqn-19; C34G6.7 cel-miR-48 101 129 aGCGUAGAUGACUC-G-----GAUGGAGu ||: |||:: || | || |||| cCGTTTCTGTATAGTCTTTTGCTTCCTCg stam-1; pqn-19; C34G6.7 cel-miR-56* 77 99 auguuggguuuuACCUAGGCGGU | |||:||||| aacttatttttcTCGATTCGCCA stam-1; pqn-19; C34G6.7 cel-miR-71 94 121 AGUGAUGGGUA---------CAGAAAgu ||:| ||||:| |||||| TCGCCACCCGTTTCTGTATAGTCTTTtg

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score stam-1 RAID00840338 cel-miR-86-5p miRNA MIMAT0000059 stam-1 mRNA 172264 Prediction 0.1828 stam-1 RAID01048438 cel-miR-59-3p miRNA MIMAT0000031 stam-1 mRNA 172264 Prediction 0.1828 stam-1 RAID01474498 cel-miR-250-3p miRNA MIMAT0000306 stam-1 mRNA 172264 Prediction 0.1828 stam-1 RAID01704237 cel-miR-67-3p miRNA MIMAT0000039 stam-1 mRNA 172264 Prediction 0.1828 stam-1 RAID01958760 cel-miR-785-3p miRNA MIMAT0004220 stam-1 mRNA 172264 Prediction 0.1828 stam-1 RAID01993441 cel-miR-252-5p miRNA MIMAT0000308 stam-1 mRNA 172264 Prediction 0.1828 stam-1 RAID02372319 cel-miR-90-3p miRNA MIMAT0000061 stam-1 mRNA 172264 Prediction 0.1828 stam-1 RAID02570878 cel-miR-70-3p miRNA MIMAT0000042 stam-1 mRNA 172264 Prediction 0.1828 stam-1 RAID02762001 cel-miR-797-5p miRNA MIMAT0004232 stam-1 mRNA 172264 Prediction 0.1828 stam-1 RAID03268110 cel-miR-2-3p miRNA MIMAT0000004 stam-1 mRNA 172264 Prediction 0.1828 stam-1 RAID03624674 cel-mir-2953 miRNA MI0013633 stam-1 mRNA 172264 Prediction 0.1828 stam-1 RAID03636362 cel-miR-43-3p miRNA MIMAT0000014 stam-1 mRNA 172264 Prediction 0.1828