DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0015102 cel-miR-60* 181558 rbc-1 uaaaAUACCGUGAGAAGGUCAa ||| | ||||||| gaacUAUAACUAGAUUCCAGUa 2 19 481 502 [ce6:X:14624663-14624684:+] 0.5071 142 7 -12.19 -0.9915 MIMAT0015107 cel-miR-71* 181558 rbc-1 cgCUUUU---UGUCU--UAUC-ACUAu ||||| ||||| |||| |||| aaGAAAAUUUACAGAUGAUAGAUGAUu 2 20 319 345 [ce6:X:14624501-14624527:+] 0.5071 129 0 -13.43 -0.8692 MIMAT0000321 cel-miR-265 181558 rbc-1 uaUGGUGGGAA--GGAGG-GAGu |::|:::|| ||||| ||| aaAUUAUUUUUCCCCUCCGCUCc 2 19 251 273 [ce6:X:14624433-14624455:+] 0.4804 121 0 -17.96 -0.3527 MIMAT0004229 cel-miR-794 181558 rbc-1 ucacugUUGC-UACUAAUGGAGu |||| | ||||||| gcuucaAACGUCUACUUACCUCu 2 17 99 121 [ce6:X:14624281-14624303:+] 0.4235 147 7 -13.31 -0.7392 MIMAT0005522 cel-miR-1021 181558 rbc-1 ggcUCCUAAAGUGUAC------UAG-AGUGAa || |||||::|| ||| ||||| accAGAUUUUCAUGUGUAAUUCAUCGUCACUu 2 23 151 182 [ce6:X:14624333-14624364:+] 0.5805 121 0 -19.26 -1.1007 MIMAT0006587 cel-miR-1820 181558 rbc-1 cuuguaguagcuuUUUGUUAGUUUu |: |||||||| ccccuccgcucccAGCCAAUCAAAc 2 13 262 286 [ce6:X:14624444-14624468:+] 0.5071 148 7 -7.09 -0.1382 MIMAT0006590 cel-miR-1823 181558 rbc-1 aaUGAGGAUUUGU-GAAGGUCAu ||| ||| :| ||||||| gaACU-AUAACUAGAUUCCAGUa 2 21 481 502 [ce6:X:14624663-14624684:+] 0.5071 149 7 -16.98 -0.9886 MIMAT0006769 cel-miR-1829a 181558 rbc-1 uuaucucuuuAAGGUUACCAAc ||| ||||||| uuuuucauguUUCAAAUGGUUa 2 13 291 312 [ce6:X:14624473-14624494:+] 0.5071 152 7 -9.72 -1.0599 MIMAT0011436 cel-miR-2210* 181558 rbc-1 cacccAUCUCGUU-AGCUGAAAu || :|| |||||||| cauuuUAAUUUAAUUCGACUUUu 2 18 203 225 [ce6:X:14624385-14624407:+] 0.5171 148 7 -10.32 -1.2616 MIMAT0000003 cel-miR-1 181558 rbc-1 auGUAUGAAGAAAUGUAAGGu || || | ||||||| aaCA-ACAACAACACAUUCCa 2 20 521 540 [ce6:X:14624703-14624722:+] 0.5071 141 7 -12.85 -1.0144 MIMAT0000035 cel-miR-63 181558 rbc-1 aaAGGUUGAGCGAAGUCACAGUau |:||| | | |:||||||| guUUCAAAUGG--UUAGUGUCAaa 3 23 299 320 [ce6:X:14624481-14624502:+] 0.5071 143 0 -17.85 -0.1448 MIMAT0000036 cel-miR-64 181558 rbc-1 aagccaUUGCGAAGUCACAGUau ||:| || ||||||| guuucaAAUGGUU-AGUGUCAaa 3 18 299 320 [ce6:X:14624481-14624502:+] 0.5071 139 0 -14.90 -0.1434 MIMAT0000037 cel-miR-65 181558 rbc-1 aagccaaUGCGAAGUCACAGUau |:| || ||||||| guuucaaAUGGUU-AGUGUCAaa 3 17 299 320 [ce6:X:14624481-14624502:+] 0.5071 134 0 -13.87 -0.1448 MIMAT0000038 cel-miR-66 181558 rbc-1 agUGUAGGG---AUUAGUCACAGUac |::|::| |::|:||||||| ucAUGUUUCAAAUGGUUAGUGUCAaa 3 22 295 320 [ce6:X:14624477-14624502:+] 0.5071 140 0 -19.71 -0.1477 MIMAT0000051 cel-miR-79 181558 rbc-1 ucgaaaccauuggauCGAAAUa |||||| uaauuuccgaguuguGCUUUAu 2 8 385 406 [ce6:X:14624567-14624588:+] 0.5071 120 6 -7.24 -0.1028 MIMAT0000283 cel-miR-228 181558 rbc-1 ggcacuuAAGUACGU-CACGGUaa | ::||:: |||||| uuuuuucUGUGUGUGUGUGCCAca 3 17 181 204 [ce6:X:14624363-14624386:+] 0.5805 127 0 -17.98 -0.1995 MIMAT0000284 cel-miR-229 181558 rbc-1 gcUACCUUUUCUAUUGGUCACAGUaa ||| | ||::::||||||| ucAUGUUUCAAAUGGUUAGUGUCAaa 3 25 295 320 [ce6:X:14624477-14624502:+] 0.5071 144 0 -16.87 -0.1448 MIMAT0000289 cel-miR-234 181558 rbc-1 uucccAUAAGAGCUCGUUAUu |||| |: |||||| uuguuUAUUAUU-UGCAAUAa 2 17 564 583 [ce6:X:14624746-14624765:+] 0.5071 122 6 -6.96 -0.5301 MIMAT0000290 cel-miR-235 181558 rbc-1 agUCCGGCCCCUCUCACGUUAu ||| | | |||||||| uuAGGAC-CAGCCAGUGCAAUu 2 21 458 478 [ce6:X:14624640-14624660:+] 0.5071 146 7 -16.08 -0.3812 MIMAT0000290 cel-miR-235 181558 rbc-1 aguccggccccucucACGUUAu |||||| aacuuguuuauuauuUGCAAUa 2 8 561 582 [ce6:X:14624743-14624764:+] 0.5071 120 6 -6.91 -0.5642 MIMAT0000307 cel-miR-251 181558 rbc-1 uuauucucgccgUGGUGAUGAAUu || ||||||| ugcacgcuucaaACGUCUACUUAc 2 13 94 117 [ce6:X:14624276-14624299:+] 0.4235 144 7 -9.42 -0.4143 MIMAT0000308 cel-miR-252 181558 rbc-1 aauggacgccgUGAUGAUGAAUa || ||||||| gcacgcuucaaACGUCUACUUAc 2 13 95 117 [ce6:X:14624277-14624299:+] 0.4235 144 7 -10.45 -0.4143 MIMAT0000310 cel-miR-254 181558 rbc-1 ggaugucagcgcuuucUAAACGu |||||| uucaaacuuguuuauuAUUUGCa 2 8 557 579 [ce6:X:14624739-14624761:+] 0.5071 120 6 -8.92 -0.5714 MIMAT0000314 cel-miR-259 181558 rbc-1 acgAUGGUCUAAUCCUACUCUAAa |: :|||| | :||||||| agaUGAUAGAUGAUUGUGAGAUUu 2 22 331 354 [ce6:X:14624513-14624536:+] 0.5071 161 7 -15.80 -0.9126 MIMAT0000700 cel-miR-358 181558 rbc-1 cuGGAACUGUCCCUAUGGUUa |||| || ||||||: uuCCUUCCCA--AAUACCAGa 2 20 138 156 [ce6:X:14624320-14624338:+] 0.5020 132 0 -12.49 -0.1388 MIMAT0004219 cel-miR-784 181558 rbc-1 agaugcaugcgucuaACACGGu |||||| uuuuuucugugugugUGUGCCa 2 8 181 202 [ce6:X:14624363-14624384:+] 0.5805 120 6 -21.52 -0.1736 MIMAT0004220 cel-miR-785 181558 rbc-1 agaUGUGUUUUGUUA-AGUGAAu |: |::||| || |||||| uuaAUUCGGAACUAUGUCACUUa 2 20 228 250 [ce6:X:14624410-14624432:+] 0.4538 131 6 -14.82 -1.0098 MIMAT0004220 cel-miR-785 181558 rbc-1 agauguGUUUUGUUAAG-UGAAu :|| :||||| |||| acauuuUAAUUUAAUUCGACUUu 2 17 202 224 [ce6:X:14624384-14624406:+] 0.5171 120 0 -8.84 -1.2473 MIMAT0004225 cel-miR-790 181558 rbc-1 gcgccACAAGCGCUCACGGUuc ||| :|:| |||||| uuuucUGUGUGUGUGUGCCAca 3 18 183 204 [ce6:X:14624365-14624386:+] 0.5805 141 0 -16.94 -0.1940 MIMAT0004226 cel-miR-791 181558 rbc-1 acGGAAUAGACGC-CUCACGGUuu ::|| | ||:| | |||||| uuUUUUCUGUGUGUGUGUGCCAca 3 22 181 204 [ce6:X:14624363-14624386:+] 0.5805 140 0 -18.88 -0.1940 MIMAT0004231 cel-miR-796 181558 rbc-1 aaUGAUUGGAGUUGAUGUAAGGu || ||| |||| ||||||| caAC-AACAACAAC-ACAUUCCa 2 22 520 540 [ce6:X:14624702-14624722:+] 0.5071 161 7 -20.52 -0.9888

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score rbc-1 RAID00063649 cel-miR-796 miRNA MIMAT0004231 rbc-1 mRNA 181558 Prediction 0.2202 rbc-1 RAID00410801 cel-miR-785-3p miRNA MIMAT0004220 rbc-1 mRNA 181558 Prediction 0.1828 rbc-1 RAID00523697 cel-miR-358-3p miRNA MIMAT0000700 rbc-1 mRNA 181558 Prediction 0.1828 rbc-1 RAID00535144 cel-miR-228-5p miRNA MIMAT0000283 rbc-1 mRNA 181558 Prediction 0.1828 rbc-1 RAID00835194 cel-miR-235-3p miRNA MIMAT0000290 rbc-1 mRNA 181558 Prediction 0.2202 rbc-1 RAID00838607 cel-miR-66-5p miRNA MIMAT0000038 rbc-1 mRNA 181558 CLIP-seq//Prediction 0.6308 rbc-1 RAID00866187 cel-miR-790-5p miRNA MIMAT0004225 rbc-1 mRNA 181558 Prediction 0.1828 rbc-1 RAID00905720 cel-miR-1-3p miRNA MIMAT0000003 rbc-1 mRNA 181558 Prediction 0.1828 rbc-1 RAID01516582 cel-miR-259-5p miRNA MIMAT0000314 rbc-1 mRNA 181558 CLIP-seq//Prediction 0.6478 rbc-1 RAID01711822 cel-miR-65-5p miRNA MIMAT0000037 rbc-1 mRNA 181558 CLIP-seq//Prediction 0.6308 rbc-1 RAID01786135 cel-miR-251 miRNA MIMAT0000307 rbc-1 mRNA 181558 Prediction 0.1828 rbc-1 RAID02487535 cel-miR-252-5p miRNA MIMAT0000308 rbc-1 mRNA 181558 Prediction 0.2202 rbc-1 RAID02498559 cel-miR-79-3p miRNA MIMAT0000051 rbc-1 mRNA 181558 CLIP-seq//Prediction 0.6478 rbc-1 RAID02569583 cel-miR-64-5p miRNA MIMAT0000036 rbc-1 mRNA 181558 CLIP-seq//Prediction 0.6308 rbc-1 RAID02733362 cel-miR-86-5p miRNA MIMAT0000059 rbc-1 mRNA 181558 Prediction 0.1828 rbc-1 RAID02757129 cel-miR-254-3p miRNA MIMAT0000310 rbc-1 mRNA 181558 Prediction 0.1828 rbc-1 RAID02987763 cel-miR-63-3p miRNA MIMAT0000035 rbc-1 mRNA 181558 CLIP-seq//Prediction 0.6308 rbc-1 RAID03390664 cel-miR-784-5p miRNA MIMAT0004219 rbc-1 mRNA 181558 Prediction 0.2202 rbc-1 RAID03406267 cel-miR-234-3p miRNA MIMAT0000289 rbc-1 mRNA 181558 Prediction 0.2202 rbc-1 RAID03688611 cel-miR-791-3p miRNA MIMAT0004226 rbc-1 mRNA 181558 Prediction 0.1828 rbc-1 RAID03726687 cel-miR-229-5p miRNA MIMAT0000284 rbc-1 mRNA 181558 CLIP-seq//Prediction 0.6308