DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0015119 cel-miR-247* 173744 rpn-11 ccauuAAUCUUUGAAAAGAGau ||| | ||||||| uuuuuUUAUUA--UUUUCUCaa 3 18 27 46 [ce6:II:4043165-4043184:-] 0.6445 126 0 -6.47 -0.6245 MIMAT0000313 cel-miR-258 173744 rpn-11 uuuuccuaAGGAGAGUUUUgg |::|||||||| uuuuauuaUUUUCUCAAAAau 3 14 30 50 [ce6:II:4043161-4043181:-] 0.6445 137 0 -11.22 -0.1000 MIMAT0005523 cel-miR-1022 173744 rpn-11 cuaCCGCAGGAUUGU-UAC-UAGAa ||:||: || | ||| |||| uucGGUGUUGGAAAACAUGAAUCUu 2 21 122 146 [ce6:II:4043065-4043089:-] 0.4659 123 0 -14.12 -0.1408 MIMAT0000310 cel-miR-254 173744 rpn-11 ggaugucagcgcuuucUAAACGu |||||| uuuuaaaucaauacucAUUUGCu 2 8 2 24 [ce6:II:4043187-4043209:-] 0.6445 120 6 -3.86 -0.2452

DNA & RNA Element - miRNAMap Gene Name Mature miRNA Target Start Target End miRNA 3-5 Alignment Target 5-3 rpn-11; K07D4.3 cel-miR-231 530 553 -AAGACGGACAACUA--GUGCUCGAAU ||:||:| |||| |||||| UUUUUGUCCG-UGAUUGCACGAGA--- rpn-11; K07D4.3 cel-miR-245 315 355 -CUCGAUGA------ACCUC-----------C-CCUGGUUA |||| :|| ||||| | |||||| UGAGCAGCUUCGCGCUGGAGUUGAACGCCACGUGGACCAU- rpn-11; K07D4.3 cel-miR-253* 245 268 -CCAGUCA----CAAUCACUCCACAC ||| || |||: ||||| UGGUGUGUAGUCGUUGAUGAGGA--- rpn-11; K07D4.3 cel-miR-264 134 155 GUAUUGUUGUUGGU--GGGCGG- |||| ||:| |||||| --AAACAUGAAUCUUCCCCGCCU rpn-11; K07D4.3 cel-miR-34 604 639 -GUUGGUCG------------AUUGGUGUGACGGA ||||::|| |:| ||||||||| UCAACUGGCCCUGGAACUGAUUGAACACACUGCCC rpn-11; K07D4.3 cel-miR-356 288 308 ACUAAACAAGCGCAACGAGUU |||| | ||| | |||||| GGAUUCGGUCGGG-UGCUCAU rpn-11; K07D4.3 cel-miR-360 282 300 AACACUUGCCCUAAUGCCAGU- |:|: ||||| |||||: ---AGGAUCGGAUU-CGGUCGG rpn-11; K07D4.3 cel-miR-38 57 78 UGAGGUCAAAAAGAGGGCCACU :||| || |||||| || UUUCCUCGUUCUCUCCCCGUC- rpn-11; K07D4.3 cel-miR-392 214 251 AGUAGUGUGCA-CUA-------------GCUACUAU- |||||||: ||| |||||:|: GCAUCACAUUCAGAUUGUUCAUAUCGACCGAUGGUGU rpn-11; K07D4.3 cel-miR-46 459 483 -ACUUCUCUC-GCUGAGGU-ACUGU |||||:| || |||| |||| AUGAAGGGCAACG-CUCCUUUGACC rpn-11; K07D4.3 cel-miR-49 317 338 AGACGUCGAAGAGC-ACCACGAA |||||||| || ||| |:| --AGCAGCUUCGCGCUGGAGUUG rpn-11; K07D4.3 cel-miR-51 267 304 -UUGUACCUA-----UCCUCGAU-------GCCCAU- :|:||||| |||| | |||||: AGAUAUGGAACUUCGAGGAUCGGAUUCGGUCGGGUGC rpn-11; K07D4.3 cel-miR-52 281 304 -UCGU-GCCUUUGUAUACAUGCCCAC- || | |||| | || |||||| GAGGAUCGGAU---UCGGU-CGGGUGC rpn-11; K07D4.3 cel-miR-53 281 304 -UCGU-GCCUUUGUUUACAUGCCCAC- || | |||| |:: |||||| GAGGAUCGGAUUCGGU----CGGGUGC rpn-11; K07D4.3 cel-miR-63 285 309 AAAGGUUGAGCGAAGUCAC-AGUAU || :|:||| | :||| |||| -AUCGGAUUCGGUCGGGUGCUCAUC rpn-11; K07D4.3 cel-miR-64 285 309 AAGCCAUUGCGAAGUCAC-AGUAU |||| || | :||| |||| AUCGGAUUCGGUCGGGUGCUCAUC rpn-11; K07D4.3 cel-miR-65 285 309 AAGCCAAUGCGAAGUCAC-AGUAU |||| || | :||| |||| AUCGGAUUCGGUCGGGUGCUCAUC rpn-11; K07D4.3 cel-miR-78 451 477 CGUGUUUGUUGG--UCCG----GAGGU |||:||:|: :||| |||| -AACAGACGAUGAAGGGCAACGCUCCU rpn-11; K07D4.3 cel-miR-788 370 402 -GAC-GUUU--ACCUUCAAU--CUU-CGCCU- ||| |:| ||| ||| ||||| UCUGUCGAUAUUGGCUCCGAAUGAACGCGGAG rpn-11; K07D4.3 cel-miR-83 287 306 AAUGACUUAAA-UAUACCACGAU |:||| :| |||||| ----CGGAUUCGGUCGGGUGCUC rpn-11; K07D4.3 cel-miR-231 531 555 AAGACGGACAACUA--GUGCUCgaau ||:||:| | |||| |||||| TTTTGTCCG-TGATTGCACGAGaatg rpn-11; K07D4.3 cel-miR-245 326 355 CUCGA--UGAACCU------CCCCUGGUua | ||| | ||| | | |||||| GCGCTGGAGTTGAACGCCACGTGGACCAtc rpn-11; K07D4.3 cel-miR-253* 246 270 CCA---GUCA-CAAUCACUCCACac ||| :||| |||: ||||| | GGTGTGTAGTCGTTGATGAGGAGat rpn-11; K07D4.3 cel-miR-264 132 153 gUAUUGUUGUU---GGUGGGCGG | |||| || :| |||||| gAAAACATGAATCTTC-CCCGCC rpn-11; K07D4.3 cel-miR-34 617 638 gUUGGUCGAUUGGUGUGACGGa |||:: :|:| ||||||||| gAACTGATTGAACACACTGCCc rpn-11; K07D4.3 cel-miR-360 279 298 AACACUUGCCCUAAUGCCAGu | | |:|: ||| | ||||| TCGAGGATCGGA-TTCGGTCg rpn-11; K07D4.3 cel-miR-38 57 78 ugAGGUCAAAAAGAGGGCCAcu ||| || |||||| || ttTCCTCGTTCTCTCCCCGTct rpn-11; K07D4.3 cel-miR-392 229 249 aguAGUGUGCACUAGCUACUAu |||:|: || |||||:| tgtTCATAT-CGACCGATGGTg rpn-11; K07D4.3 cel-miR-46 460 482 ACUUCUC-UCGCUGAGGUACUGu |||||:| | || : |: |||| TGAAGGGCAACGCTCCTTTGACc rpn-11; K07D4.3 cel-miR-49 315 337 agaCGUCGAAGAGC-ACCACGAa |||||||| || ||| |:| tgaGCAGCTTCGCGCTGGAGTTg rpn-11; K07D4.3 cel-miR-51 278 302 uuGUACCUAUCCU---CGAUGCCCAu |: |||| ||| | | ||||| ttCGAGGATCGGATTCGGT-CGGGTg rpn-11; K07D4.3 cel-miR-52 282 302 UCGU-GCCUUUGUAUACAUGCCCAC || | |||| |: || |||||| AGGATCGGATTCG---GT-CGGGTG rpn-11; K07D4.3 cel-miR-53 276 302 ucguGC-CUUUGUUUA---CAUGCCCAC || |:| |::|| || |||||| acttCGAGGATCGGATTCGGT-CGGGTG rpn-11; K07D4.3 cel-miR-59 499 520 GUAGUAGGACUAUUUGCUAAGCu || | :||| |::||||||| CACAAGATTGA-AGGCGATTCGc rpn-11; K07D4.3 cel-miR-63 284 308 aaAGGUUGAGCGAAGUCAC-AGUAu || :|:||| | :||| |||| gaTCGGATTCGGTCGGGTGCTCATc rpn-11; K07D4.3 cel-miR-78 450 476 cgUGUUUGUUGGU--CCG----GAGGu |||:||:|: | ||| |||| aaACAGACGATGAAGGGCAACGCTCCt rpn-11; K07D4.3 cel-miR-788 371 400 GAC-GUU-U-ACC--UUCAAUCUU-CGCCU ||| |:| | ||| | ||| ||||| CTGTCGATATTGGCTCCGAATGAACGCGGA rpn-11; K07D4.3 cel-miR-83 284 305 aaugacuuaaauauaCCACGAu |||||| gatcggattcggtcgGGTGCTc rpn-11; K07D4.3 cel-miR-34 631 638 ---------GUUGGUCG------------AUUGGUGUGACGGA |||| || |:| ||||||||| CUCAAGAAUCAACUGGCCCUGGAACUGAUUGAACACACUGCCC rpn-11; K07D4.3 cel-miR-59 513 520 ---------------------GUAGUAGGACUAUUUGCUAAGCU || | :||| |::||||||| UGACCUUCAAAAUAUCAAUGACACAAGAUUGA-AGGCGAUUCGC

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score rpn-11 RAID02579631 cel-miR-254-3p miRNA MIMAT0000310 rpn-11 mRNA 173744 Prediction 0.1828