DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0015119 cel-miR-247* 173175 smu-1 ccauuAAU-CUUUGAAAAGAGAu ||| |||| |||||||| cauuuUUAUGAAAAUUUUCUCUa 2 18 33 55 [ce6:I:13004159-13004181:+] 0.5425 168 7 -13.07 -1.3083 MIMAT0015119 cel-miR-247* 173175 smu-1 ccauuAAU-CUUUGAAAAGAGAu ||| |||| |||||||| cauuuUUAUGAAAAUUUUCUCUa 2 18 33 55 [ce6:I:13004159-13004181:+] 0.5425 168 7 -13.07 -1.3089 MIMAT0000698 cel-miR-356 173175 smu-1 acUAAACAAGCGCAACGAGUu |||| || ||||||: aaAUUU-UUGAAAUUGCUCGa 2 20 107 126 [ce6:I:13004233-13004252:+] 0.4597 133 0 -12.19 -0.1188 MIMAT0000698 cel-miR-356 173175 smu-1 acUAAACAAGCGCAACGAGUu |||| || ||||||: aaAUUU-UUGAAAUUGCUCGa 2 20 107 126 [ce6:I:13004233-13004252:+] 0.4597 133 0 -12.19 -0.1261 MIMAT0015241 cel-miR-797* 173175 smu-1 uaaagugucuuugguUACUUUu |||||| uuuuuugacauuuuuAUGAAAa 2 8 25 46 [ce6:I:13004151-13004172:+] 0.5425 120 6 -7.06 -0.3479 MIMAT0015241 cel-miR-797* 173175 smu-1 uaaagugucuuugguUACUUUu |||||| uuuuuugacauuuuuAUGAAAa 2 8 25 46 [ce6:I:13004151-13004172:+] 0.5425 120 6 -7.06 -0.3508 MIMAT0005031 cel-miR-1018 173175 smu-1 gacauuCAGGUU--ACUAGAGAGa ||::|: ||||||||: uauuuuGUUUAGACUGAUCUCUUa 2 17 67 90 [ce6:I:13004193-13004216:+] 0.4597 139 0 -14.11 -0.1207 MIMAT0005031 cel-miR-1018 173175 smu-1 gacauuCAGGUU--ACUAGAGAGa ||::|: ||||||||: uauuuuGUUUAGACUGAUCUCUUa 2 17 67 90 [ce6:I:13004193-13004216:+] 0.4597 139 0 -14.11 -0.1219 MIMAT0005523 cel-miR-1022 173175 smu-1 cuaccgcaggauuguuACUAGAa |||||| ccuauuuuguuuagacUGAUCUc 2 8 65 87 [ce6:I:13004191-13004213:+] 0.4597 120 6 -9.81 -0.1456 MIMAT0005523 cel-miR-1022 173175 smu-1 cuaccgcaggauuguuACUAGAa |||||| ccuauuuuguuuagacUGAUCUc 2 8 65 87 [ce6:I:13004191-13004213:+] 0.4597 120 6 -9.81 -0.1471 MIMAT0015267 cel-miR-1829a* 173175 smu-1 auguuuguuaaucuucAGGGGAa |||||| gauuuuuucgccauuuUCCCCUg 2 8 154 176 [ce6:I:13004280-13004302:+] 0.4597 120 6 -9.51 -0.1973 MIMAT0015267 cel-miR-1829a* 173175 smu-1 auguuuguuaaucuucAGGGGAa |||||| gauuuuuucgccauuuUCCCCUg 2 8 154 176 [ce6:I:13004280-13004302:+] 0.4597 120 6 -9.51 -0.1742 MIMAT0006771 cel-miR-1829c 173175 smu-1 auGUUGGUAGAACU--UAAAGCGaa :| :: | |||| |||||| caUAUUUUUGUUGAUUUUUUCGCca 3 22 142 166 [ce6:I:13004268-13004292:+] 0.4597 128 0 -10.13 -0.1554 MIMAT0006771 cel-miR-1829c 173175 smu-1 auGUUGGUAGAACU--UAAAGCGaa :| :: | |||| |||||| caUAUUUUUGUUGAUUUUUUCGCca 3 22 142 166 [ce6:I:13004268-13004292:+] 0.4597 128 0 -10.13 -0.1728 MIMAT0006776 cel-miR-1834 173175 smu-1 aaccUAGAGUUA--CCAACUAGAGa ||:|:: | | ||||||| cccuAUUUUGUUUAGACUGAUCUCu 2 20 64 88 [ce6:I:13004190-13004214:+] 0.4597 146 7 -12.40 -0.9131 MIMAT0006776 cel-miR-1834 173175 smu-1 aaccUAGAGUUA--CCAACUAGAGa ||:|:: | | ||||||| cccuAUUUUGUUUAGACUGAUCUCu 2 20 64 88 [ce6:I:13004190-13004214:+] 0.4597 146 7 -12.40 -0.9165 MIMAT0011432 cel-miR-2209a 173175 smu-1 acAUCACAUUGGCGACUAGAGa | || ||: |||||||| uuUUGUUUAG--ACUGAUCUCu 2 21 69 88 [ce6:I:13004195-13004214:+] 0.4597 149 7 -15.53 -0.9098 MIMAT0011432 cel-miR-2209a 173175 smu-1 acAUCACAUUGGCGACUAGAGa | || ||: |||||||| uuUUGUUUAG--ACUGAUCUCu 2 21 69 88 [ce6:I:13004195-13004214:+] 0.4597 149 7 -15.53 -0.9132 MIMAT0011446 cel-miR-2215 173175 smu-1 uuuGUUGUGCGCGAUGCUAAGa ||: : | | ||||||: cccCAGAUUUCCCCACGAUUUu 2 20 5 26 [ce6:I:13004131-13004152:+] 0.6253 131 0 -9.33 -0.2611 MIMAT0011446 cel-miR-2215 173175 smu-1 uuuGUUGUGCGCGAUGCUAAGa ||: : | | ||||||: cccCAGAUUUCCCCACGAUUUu 2 20 5 26 [ce6:I:13004131-13004152:+] 0.6253 131 0 -9.33 -0.2333 MIMAT0000053 cel-miR-80 173175 smu-1 agccgAAAGUUGAUU--ACUAGAGu |||:: :||: ||||||| cccuaUUUUGUUUAGACUGAUCUCu 2 19 64 88 [ce6:I:13004190-13004214:+] 0.4597 153 7 -11.57 -0.9065 MIMAT0000053 cel-miR-80 173175 smu-1 agccgAAAGUUGAUU--ACUAGAGu |||:: :||: ||||||| cccuaUUUUGUUUAGACUGAUCUCu 2 19 64 88 [ce6:I:13004190-13004214:+] 0.4597 153 7 -11.57 -0.9099 MIMAT0000054 cel-miR-81 173175 smu-1 ugAUCGAA-AGUGCU-ACUAGAGu || :|| |: || ||||||| ccUAUUUUGUUUAGACUGAUCUCu 2 21 65 88 [ce6:I:13004191-13004214:+] 0.4597 150 7 -13.24 -0.9065 MIMAT0000054 cel-miR-81 173175 smu-1 ugAUCGAA-AGUGCU-ACUAGAGu || :|| |: || ||||||| ccUAUUUUGUUUAGACUGAUCUCu 2 21 65 88 [ce6:I:13004191-13004214:+] 0.4597 150 7 -13.24 -0.9099 MIMAT0000055 cel-miR-82 173175 smu-1 ugACCGAAAGUGCUACUAGAGu | |:|| || ||||||| uuUUGUUUAGAC--UGAUCUCu 2 21 69 88 [ce6:I:13004195-13004214:+] 0.4597 149 7 -11.36 -0.8804 MIMAT0000055 cel-miR-82 173175 smu-1 ugACCGAAAGUGCUACUAGAGu | |:|| || ||||||| uuUUGUUUAGAC--UGAUCUCu 2 21 69 88 [ce6:I:13004195-13004214:+] 0.4597 149 7 -11.36 -0.8839 MIMAT0000060 cel-miR-87 173175 smu-1 cgUGUGGACUUUGAAACGAGUg |: ::||||| ||||||: aaAUUUUUGAAA--UUGCUCGa 2 21 107 126 [ce6:I:13004233-13004252:+] 0.4597 141 0 -14.21 -0.1100 MIMAT0000060 cel-miR-87 173175 smu-1 cgUGUGGACUUUGAAACGAGUg |: ::||||| ||||||: aaAUUUUUGAAA--UUGCUCGa 2 21 107 126 [ce6:I:13004233-13004252:+] 0.4597 141 0 -14.21 -0.1168 MIMAT0000288 cel-miR-233 173175 smu-1 ggcguguacgcgUAACGAGUu |||||||: caaauuuuugaaAUUGCUCGa 2 10 106 126 [ce6:I:13004232-13004252:+] 0.4597 129 0 -15.90 -0.1224 MIMAT0000288 cel-miR-233 173175 smu-1 ggcguguacgcgUAACGAGUu |||||||: caaauuuuugaaAUUGCUCGa 2 10 106 126 [ce6:I:13004232-13004252:+] 0.4597 129 0 -15.90 -0.1299 MIMAT0000697 cel-miR-355 173175 smu-1 guAUCGAGUCCGAUUUUGUUu || ||:| :||||| || auUAACUUAUUUUAAAAAAAa 2 20 181 201 [ce6:I:13004307-13004318,13012829-13012837:+] 0.4798 131 0 -6.10 -0.1348 MIMAT0004220 cel-miR-785 173175 smu-1 agAUGUGUUUUGUUAAGUGAAu | | | :| |||| |||| uuUCCCCUGAUAAAUUAACUUa 2 21 168 189 [ce6:I:13004294-13004315:+] 0.4597 124 0 -5.56 -0.1649 MIMAT0004227 cel-miR-792 173175 smu-1 agacuuucaacuucUCUAAAGuu ||||||| ------uuuuccccAGAUUUCcc 3 10 1 17 [ce6:I:13004127-13004143:+] 0.6253 125 0 -5.32 -0.6734 MIMAT0004227 cel-miR-792 173175 smu-1 agacuuucaacuucUCUAAAGuu ||||||| ------uuuuccccAGAUUUCcc 3 10 1 17 [ce6:I:13004127-13004143:+] 0.6253 125 0 -5.32 -0.5867

DNA & RNA Element - miRNAMap Gene Name Mature miRNA Target Start Target End miRNA 3-5 Alignment Target 5-3 smu-1; CC4.3; CELE_CC4.3 cel-miR-233 113 128 GGCGUGUACGCGUAACGAGUU- || |||||||:| ------UUGAA-AUUGCUCGAA smu-1; CC4.3; CELE_CC4.3 cel-miR-268 96 117 UGGUUUGACGAAGAUUAAGAACGG |||| ||:||| ||||:||| UCCAA--UGUUUCAAAUUUUUGA- smu-1; CC4.3; CELE_CC4.3 cel-miR-80 72 89 AGCCGAAAGUUGAUUACUAGAGU |:|| :|| ||||||| --UGUUUA-GAC---UGAUCUCU smu-1; CC4.3; CELE_CC4.3 cel-miR-81 72 89 UGAUCGAAAGUGCUACUAGAGU |:|| || ||||||| ---UGUUUAGAC--UGAUCUCU smu-1; CC4.3; CELE_CC4.3 cel-miR-82 72 89 UGACCGAAAGUGCUACUAGAGU |:|| || ||||||| ---UGUUUAGAC--UGAUCUCU smu-1; CC4.3; CELE_CC4.3 cel-miR-233 106 126 ggcguguacgcgUAACGAGUU |||||||:| caaatttttgaaATTGCTCGA smu-1; CC4.3; CELE_CC4.3 cel-miR-268 96 117 uGGUUUGACGAAGAUUAAGAACgg |||| ||:||| ||||:||| tCCAA--TGTTTCAAATTTTTGaa smu-1; CC4.3; CELE_CC4.3 cel-miR-80 81 88 AGC------------------------CGAAAGUUGAUUACUAGAGU |:|| :|| ||||||| AUUUUCUCUAAAAGUUACCCCUAUUUUGUUUA-GAC---UGAUCUCU smu-1; CC4.3; CELE_CC4.3 cel-miR-81 81 88 U-------------------GAUCGAAAGUG-CU-ACUAGAGU ||| :|| || ||||||| AUUUUCUCUAAAAGUUACCCCUAUUUUGUUUAGACUGAUCUCU smu-1; CC4.3; CELE_CC4.3 cel-miR-82 81 88 UGAC-----------------------CGAAAGUGCU-ACUAGAGU |:|| || ||||||| AUUUUCUCUAAAAGUUACCCCUAUUUUGUUUA---GACUGAUCUCU

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score smu-1 RAID00052714 cel-miR-81-3p miRNA MIMAT0000054 smu-1 mRNA 173175 Prediction 0.1828 smu-1 RAID00401599 cel-miR-792-3p miRNA MIMAT0004227 smu-1 mRNA 173175 Prediction 0.1828 smu-1 RAID00877919 cel-miR-80-3p miRNA MIMAT0000053 smu-1 mRNA 173175 Prediction 0.1828 smu-1 RAID01364744 cel-miR-87-3p miRNA MIMAT0000060 smu-1 mRNA 173175 Prediction 0.1828 smu-1 RAID01799686 cel-miR-233-3p miRNA MIMAT0000288 smu-1 mRNA 173175 Prediction 0.1828 smu-1 RAID02007248 cel-miR-785-3p miRNA MIMAT0004220 smu-1 mRNA 173175 Prediction 0.1828 smu-1 RAID03252640 cel-miR-82-3p miRNA MIMAT0000055 smu-1 mRNA 173175 Prediction 0.1828 smu-1 RAID03537357 cel-miR-355-5p miRNA MIMAT0000697 smu-1 mRNA 173175 Prediction 0.1828