DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0015099 cel-miR-51* 171722 src-1 acguggacauggacgAAGGUAc |||||| uaugcccaacucaaaUUCCAUu 2 8 798 819 [ce6:I:1580079-1580100:+] 0.5000 120 6 -11.54 -0.1189 MIMAT0015115 cel-miR-239b* 171722 src-1 aaaAACGUGUG-GUGUUUUCAcg || |||| | |||||| uuaUUAAACACAAAAAAAAGUuc 3 20 741 763 [ce6:I:1580022-1580044:+] 0.5000 134 0 -10.23 -0.1217 MIMAT0015119 cel-miR-247* 171722 src-1 ccaUUAAUCU-UUGAAAAGAGAu |||| | :|||||||| ucaAAUUCCAUUUUUUUUCUCUu 2 20 808 830 [ce6:I:1580089-1580111:+] 0.5000 150 7 -9.98 -1.1827 MIMAT0015239 cel-miR-786* 171722 src-1 cauuuaugggguugacUAUAAGc |||||| cugaaaauugauauauAUAUUCg 2 8 205 227 [ce6:I:1579486-1579508:+] 0.5000 120 6 -9.78 -0.1154 MIMAT0015240 cel-miR-788* 171722 src-1 gcUAAGAUU-AGGUAAAGg | || || |||||||: caACUCAAAUUCCAUUUUu 2 17 804 822 [ce6:I:1580085-1580103:+] 0.5000 139 0 -8.37 -0.1022 MIMAT0005822 cel-miR-1019* 171722 src-1 uuUUACUUUGAGCUUGUUAC-GAGUg |||||| |||| :||| |||| cgAAUGAA--UCGA--GAUGCCUCAu 2 24 897 918 [ce6:I:1580178-1580199:+] 0.5000 129 0 -17.17 -0.5427 MIMAT0005032 cel-miR-1019 171722 src-1 gaccUUUCGUUACACCUUAAUGUc ||| :: | ||||||| cacaAAACUGCUCCAAAAUUACAc 2 21 31 54 [ce6:I:1579312-1579335:+] 0.3937 144 7 -5.83 -0.4768 MIMAT0005033 cel-miR-1020 171722 src-1 gacuUUCACAGUGUCU-UAUUa :| | |||:||| |||| aauuGAUUUUCAUAGAGAUAAu 2 18 505 526 [ce6:I:1579786-1579807:+] 0.5194 125 0 -12.34 -1.0934 MIMAT0006587 cel-miR-1820 171722 src-1 cuUGUAGUAGCUUUUUGUU-AGUUUu |:|| ||: | : ||| ||||| auAUAUAAUUUAUGCCCAACUCAAAu 2 24 788 813 [ce6:I:1580069-1580094:+] 0.5000 127 0 -4.36 -0.7904 MIMAT0015267 cel-miR-1829a* 171722 src-1 auguuuguuaaucuucAGGGGAa |||||| auuccucguuuuuguuUCCCCUa 2 8 77 99 [ce6:I:1579358-1579380:+] 0.4537 120 6 -10.15 -0.1029 MIMAT0011425 cel-miR-2207 171722 src-1 gaAUAUGUGUCAGAGUUAAGUgu | | || | |||||| gcUUUUCAAUGGAAAAAUUCAga 3 22 479 501 [ce6:I:1579760-1579782:+] 0.5194 121 0 -8.50 -0.1455 MIMAT0011431 cel-miR-2209a* 171722 src-1 cuuccucuucucaccAAUGUGAg ||||||| aaaacugcuccaaaaUUACACUu 2 9 34 56 [ce6:I:1579315-1579337:+] 0.3937 140 7 -7.77 -0.5888 MIMAT0011433 cel-miR-2209c* 171722 src-1 uuUGUUCUG-C-ACG--CCAAUGUGAg |||| || | | | ||||||| ucACAAAACUGCUCCAAAAUUACACUu 2 22 30 56 [ce6:I:1579311-1579337:+] 0.3937 142 7 -12.44 -0.5961 MIMAT0011447 cel-miR-2216 171722 src-1 cggauGGCUGAA-UUUUACAcg ::|:||| ||||||| gaaauUUGGCUUAAAAAUGUua 3 17 576 597 [ce6:I:1579857-1579878:+] 0.5000 139 0 -11.36 -0.1069 MIMAT0011450 cel-miR-1832b 171722 src-1 uagucgcUUAGCGAGACGGGUga ||| :| |||||| uauauauAAU--UUAUGCCCAac 3 17 787 807 [ce6:I:1580068-1580088:+] 0.5000 125 0 -13.61 -0.1262 MIMAT0011458 cel-miR-2218b* 171722 src-1 agAGU--GAUGUUUGAUGUUUAaa ||| :| :| | ||||||| cuUCAAGUUUUAUA-UACAAAUau 3 21 763 785 [ce6:I:1580044-1580066:+] 0.5000 129 0 -7.11 -0.1705 MIMAT0011462 cel-miR-2220 171722 src-1 gacauucAGGU-GUUUGUUAACu ||:: |:|||||||| ugggguuUCUGUCGAACAAUUGa 2 16 151 173 [ce6:I:1579432-1579454:+] 0.5000 154 7 -16.50 -0.9475 MIMAT0000035 cel-miR-63 171722 src-1 aaAGGUUGAGCGAAGU--CACAGUAu |:| :|:|:||:: |||||| uuUUCUCUUUGUUUUGUUUUGUCAUu 2 23 822 847 [ce6:I:1580103-1580128:+] 0.5000 125 6 -15.16 -0.1499 MIMAT0000036 cel-miR-64 171722 src-1 aagccauugcgaagucACAGUAu |||||| ucucuuuguuuuguuuUGUCAUu 2 8 825 847 [ce6:I:1580106-1580128:+] 0.5000 120 6 -10.89 -0.1528 MIMAT0000037 cel-miR-65 171722 src-1 aagccaaugcgaagucACAGUAu |||||| ucucuuuguuuuguuuUGUCAUu 2 8 825 847 [ce6:I:1580106-1580128:+] 0.5000 120 6 -10.88 -0.1514 MIMAT0000038 cel-miR-66 171722 src-1 aguguagggauuagucACAGUAc |||||| ucucuuuguuuuguuuUGUCAUu 2 8 825 847 [ce6:I:1580106-1580128:+] 0.5000 120 6 -8.34 -0.1543 MIMAT0000284 cel-miR-229 171722 src-1 gcuaccuuuucuauuggucACAGUAa |||||| uuuucucuuuguuuuguuuUGUCAUu 2 8 822 847 [ce6:I:1580103-1580128:+] 0.5000 120 6 -7.73 -0.1514 MIMAT0000286 cel-miR-231 171722 src-1 aagacggaCAACUAGUGCUCGAAu | | |: ||||||| auaauaucGAUUUUUUCGAGCUUu 2 17 460 483 [ce6:I:1579741-1579764:+] 0.5097 144 7 -12.78 -0.8708 MIMAT0000291 cel-miR-236 171722 src-1 ucgcAGUAAUGGACUGUCAUAAu | ||| :| ||||||| uuucUGAUUUUC-CCCAGUAUUu 2 20 256 277 [ce6:I:1579537-1579558:+] 0.5000 145 7 -10.40 -0.3164 MIMAT0000307 cel-miR-251 171722 src-1 uuaUUCUCGCCGUGGUGAUGAAUu || | | | | |||||||| accAAAACCCUCUCGACUACUUAc 2 22 676 699 [ce6:I:1579957-1579980:+] 0.5000 157 7 -10.13 -0.5214 MIMAT0000308 cel-miR-252 171722 src-1 aauggacgccGUGAUGAUGAAUa | | |||||||| ccaaaacccuCUCGACUACUUAc 2 14 677 699 [ce6:I:1579958-1579980:+] 0.5000 149 7 -11.42 -0.5214 MIMAT0004216 cel-miR-255 171722 src-1 gacaUUUUUUAGAGAAG-UCAAa |||||| :||||| |||| acaaAAAAAAGUUCUUCAAGUUu 2 19 750 772 [ce6:I:1580031-1580053:+] 0.5000 142 0 -14.18 -1.1754 MIMAT0000314 cel-miR-259 171722 src-1 acgAUGGUCUAAUCCUACUCUAAa ||:|: | | ||||||| auaUAUCGCA--AAAUUGAGAUUu 2 22 525 546 [ce6:I:1579806-1579827:+] 0.5194 142 7 -11.51 -1.0733 MIMAT0000749 cel-lsy-6 171722 src-1 gcuuUACGCAGAGUAUGUUUu | |: |: :||||||| cuucAAGUUUUAUAUACAAAu 2 18 763 783 [ce6:I:1580044-1580064:+] 0.5000 149 7 -8.08 -1.2166 MIMAT0000768 cel-miR-392 171722 src-1 aguagugugcacuAGCUACUau ||||||| aaaagucgauuuuUCGAUGAaa 3 10 558 579 [ce6:I:1579839-1579860:+] 0.5097 125 0 -13.14 -0.1096 MIMAT0004222 cel-miR-787 171722 src-1 gcuUUCUA--UGAUUUUGCUCGAAu || || |:| ||||||| uauAAUAUCGAUUUUUUCGAGCUUu 2 21 459 483 [ce6:I:1579740-1579764:+] 0.5097 143 7 -12.57 -0.8708 MIMAT0004227 cel-miR-792 171722 src-1 agacuuucaacuucucUAAAGUu |||||| ucgauuuuaacucaaaAUUUCAu 2 8 604 626 [ce6:I:1579885-1579907:+] 0.5000 120 6 -3.83 -0.1327 MIMAT0004231 cel-miR-796 171722 src-1 aaUGAU-UGGAGUUGAUGU-AAGGu |||: || ||:|||| |||| aaACUGCUCCAAAAUUACACUUCCa 2 22 35 59 [ce6:I:1579316-1579340:+] 0.4658 128 0 -19.65 -1.0981

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score src-1 RAID00709447 cel-lsy-6-3p miRNA MIMAT0000749 src-1 mRNA 171722 Prediction 0.1828 src-1 RAID00717560 cel-miR-66-5p miRNA MIMAT0000038 src-1 mRNA 171722 Prediction 0.1828 src-1 RAID01376235 cel-miR-259-5p miRNA MIMAT0000314 src-1 mRNA 171722 Prediction 0.1828 src-1 RAID01573369 cel-miR-65-5p miRNA MIMAT0000037 src-1 mRNA 171722 Prediction 0.1828 src-1 RAID01666288 cel-miR-251 miRNA MIMAT0000307 src-1 mRNA 171722 Prediction 0.1828 src-1 RAID01771743 cel-miR-231-3p miRNA MIMAT0000286 src-1 mRNA 171722 Prediction 0.1828 src-1 RAID02371085 cel-miR-252-5p miRNA MIMAT0000308 src-1 mRNA 171722 Prediction 0.1828 src-1 RAID02399610 cel-miR-64-5p miRNA MIMAT0000036 src-1 mRNA 171722 Prediction 0.1828 src-1 RAID02644772 cel-miR-787-3p miRNA MIMAT0004222 src-1 mRNA 171722 Prediction 0.1828 src-1 RAID02707374 cel-miR-792-3p miRNA MIMAT0004227 src-1 mRNA 171722 Prediction 0.1828 src-1 RAID02727010 cel-miR-255-3p miRNA MIMAT0004216 src-1 mRNA 171722 Prediction 0.1828 src-1 RAID02880552 cel-miR-63-3p miRNA MIMAT0000035 src-1 mRNA 171722 Prediction 0.1828 src-1 RAID03592889 cel-miR-229-5p miRNA MIMAT0000284 src-1 mRNA 171722 Prediction 0.1828 src-1 RAID03876363 cel-miR-392-3p miRNA MIMAT0000768 src-1 mRNA 171722 Prediction 0.1828 src-1 RAID03928254 cel-miR-236-3p miRNA MIMAT0000291 src-1 mRNA 171722 Prediction 0.1828 src-1 RAID04024118 cel-miR-796 miRNA MIMAT0004231 src-1 mRNA 171722 CLIP-seq//Prediction 0.6308