DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0015091 cel-let-7* 174295 ufd-2 caUUCCAUCUUUUAACGUAU-CAAGu || || || ||| :||| |||| auAACUUAUAAUAUU-UAUACGUUCc 2 24 422 446 [ce6:II:8066295-8066319:+] 0.5120 129 0 -3.56 -0.7107 MIMAT0015096 cel-miR-46* 174295 ufd-2 gacaGUUAUCUGCCGAGAGAa || ||| ||||||| cuccCACCAGA-AGCUCUCUa 2 18 1595 1614 [ce6:II:8067547-8067566:+] 0.7488 147 7 -14.24 -0.8706 MIMAT0015097 cel-miR-47* 174295 ufd-2 ugacaGUUAUCUGACGAGAGAa || ||| ||||||| ucuccCACCAGA-AGCUCUCUa 2 18 1594 1614 [ce6:II:8067546-8067566:+] 0.7488 147 7 -15.11 -0.8706 MIMAT0015111 cel-miR-124* 174295 ufd-2 ugAUUUCAGUGAUCCCAC-GUACg | |||| |||| ||| |||| ucUCAAGU-ACUACCGUGACAUGc 2 22 703 725 [ce6:II:8066576-8066598:+] 0.7609 131 0 -18.42 -0.4224 MIMAT0015111 cel-miR-124* 174295 ufd-2 ugauUUCAGUGAUCCCA-CGUACg |:||||:| || ||||| augcAGGUCAUU--CGUCGCAUGg 2 20 722 743 [ce6:II:8066595-8066616:+] 0.8032 120 0 -15.19 -0.3257 MIMAT0000313 cel-miR-258 174295 ufd-2 uuuuccuaaGGAGAGUUUUGg || :||||||| aucguccagCCAUUCAAAACu 2 13 1676 1696 [ce6:II:8067679-8067699:+] 0.7634 148 7 -12.46 -0.7803 MIMAT0000322 cel-miR-266 174295 ufd-2 cgaaacgguuUCAGAACGGa | ||||||| uaaaguugguAUUCUUGCCc 2 11 168 187 [ce6:II:8066041-8066060:+] 0.4908 142 7 -13.12 -0.3881 MIMAT0000323 cel-miR-267 174295 ufd-2 acgucGUCUGUG-AAGUGCCc |:|| |: ||||||| guugcCGGAAAUGUUCACGGa 2 16 944 964 [ce6:II:8066817-8066837:+] 0.8032 150 7 -15.90 -0.7169 MIMAT0000324 cel-miR-268 174295 ufd-2 ugGUUUGACGAAGAUUAAGAACGg :||| |:| | |||||||| cuUAAA--GUUGGU-AUUCUUGCc 2 23 166 186 [ce6:II:8066039-8066059:+] 0.4908 149 7 -16.14 -0.2045 MIMAT0000324 cel-miR-268 174295 ufd-2 ugguuugacgaagaUUAAGAACGg ::||||||| gcuaccguaaccgaGGUUCUUGCu 2 11 905 928 [ce6:II:8066778-8066801:+] 0.8032 142 7 -15.53 -0.2953 MIMAT0000325 cel-miR-269 174295 ufd-2 ucaaaaCGGUC--UCAGAACGg || || ||||||| cacacaGCAAGUUCGUCUUGCg 2 15 589 610 [ce6:II:8066462-8066483:+] 0.6327 141 7 -12.68 -0.1190 MIMAT0000696 cel-miR-354 174295 ufd-2 uccucgUCGUUGUUUGUUCCa :|| |: :|||||| acuuaaGGCUAUUGACAAGGa 2 16 1522 1542 [ce6:II:8067474-8067494:+] 0.7488 135 6 -11.39 -0.1551 MIMAT0004233 cel-miR-798 174295 ufd-2 agUCAGUUAUACAUUC-CGAAu |||| || || ||| |||| gaAGUCUAU-UGGAAGAGCUUa 2 20 1711 1731 [ce6:II:8067714-8067734:+] 0.7634 129 0 -13.40 -1.0320 MIMAT0005522 cel-miR-1021 174295 ufd-2 ggcucCUAAAGUGUACUAGAG-UGAa |:|||| ::| ||||| ||| uccgcGGUUUC-UGUCAUCUCUACUc 2 21 780 804 [ce6:II:8066653-8066677:+] 0.8032 130 0 -18.88 -0.7875 MIMAT0006586 cel-miR-1819 174295 ufd-2 agguaguucgaguUAGUAAGGu |||||||| cgagcacggaaguAUCAUUCCa 2 10 609 630 [ce6:II:8066482-8066503:+] 0.7284 145 7 -18.14 -1.0898 MIMAT0015266 cel-miR-1822* 174295 ufd-2 cgGCUAUCGAAA-GGGU-CUCU-UUGa | ||: |||| ::|: |||| ||| ggCAAUGUCUUUAUUCGCGAGACAACu 2 23 535 561 [ce6:II:8066408-8066434:+] 0.6327 124 0 -15.26 -0.2544 MIMAT0006771 cel-miR-1829c 174295 ufd-2 auGUUGGUAGAACU-UAA-AGCGAa ::|: :| | || ||| ||||| guUGAUGGUAUGGACAUUCUCGCUg 2 22 1280 1304 [ce6:II:8067232-8067256:+] 0.8019 120 0 -8.05 -0.6228 MIMAT0011427 cel-miR-2208a 174295 ufd-2 ccuauagucuaagccCAUGUGaa |||||| aggauccaugcauauGUACACaa 3 9 970 992 [ce6:II:8066843-8066865:+] 0.8032 120 0 -9.79 -0.1868 MIMAT0011429 cel-miR-2208b-5p 174295 ufd-2 ccuauagucuaggccCAUGUGaa |||||| aggauccaugcauauGUACACaa 3 9 970 992 [ce6:II:8066843-8066865:+] 0.8032 120 0 -11.96 -0.1868 MIMAT0011438 cel-miR-2211 174295 ufd-2 aaagAGGAGA-UUUAAGAUGG-ACu | |||| ||:| ||||| || aagaUGCUCUCAAGUACUACCGUGa 2 20 696 720 [ce6:II:8066569-8066593:+] 0.7187 130 0 -18.09 -0.4794 MIMAT0011438 cel-miR-2211 174295 ufd-2 aaaGAGGAGAUUUAAGAUG-GACu :|:|| | | ||||| ||| cggUUUCUGUCAUCUCUACUCUGg 2 21 784 807 [ce6:II:8066657-8066680:+] 0.8032 124 0 -16.04 -0.6434 MIMAT0011444 cel-miR-2214 174295 ufd-2 uugcggccaGUUCAACA----ACAGUUAc ::| |||| ||||||| auuguuuugUGAUUUGUUACAUGUCAAUa 2 17 396 424 [ce6:II:8066269-8066297:+] 0.5014 143 7 -8.60 -0.8941 MIMAT0011452 cel-miR-2217 174295 ufd-2 uggCUUUGUCCGUGUUC-CCAGCu |||:: ||| ||| ||||| aagGAAGUUCGCA-AAGAGGUCGa 2 21 1538 1560 [ce6:II:8067490-8067512:+] 0.7488 126 0 -20.62 -0.8988 MIMAT0011454 cel-miR-2209b 174295 ufd-2 acuucGUGUUGGCG--AGUAGAGa |:|:::: | ||||||| aaaucCGCGGUUUCUGUCAUCUCu 2 18 777 800 [ce6:II:8066650-8066673:+] 0.8032 144 7 -18.69 -0.4513 MIMAT0000004 cel-miR-2 174295 ufd-2 cguGU-AGUUUCGACCGAC-ACUAu || ||||| || ||| |||| agcCAUUCAAAACU-UCUGCUGAUg 2 21 1683 1706 [ce6:II:8067686-8067709:+] 0.7634 125 0 -15.35 -0.8486 MIMAT0000042 cel-miR-70 174295 ufd-2 uacCUUUGUGGUUGCUGCAUAAu |: |||:| : ||||||| cuuGGUACAUCUGGAACGUAUUu 2 21 505 527 [ce6:II:8066378-8066400:+] 0.6327 156 7 -17.02 -0.2545 MIMAT0000044 cel-miR-72 174295 ufd-2 agucgaUACGGUUGU-AGAACGGa | |:::::| ||||||| uccuuaAAGUUGGUAUUCUUGCCc 2 18 164 187 [ce6:II:8066037-8066060:+] 0.4908 148 7 -14.61 -0.3911 MIMAT0000045 cel-miR-73 174295 ufd-2 ugACUUGACGGAUGUAGAACGGu | || | ||: ||||||| cuUAAAGUUGGUAU-UCUUGCCc 2 22 166 187 [ce6:II:8066039-8066060:+] 0.4908 147 7 -12.87 -0.3709 MIMAT0000046 cel-miR-74 174295 ufd-2 acaUCUGACGGUAAAGAACGGu | ::|| :| |||||||| uuaAAGUUGGUA-UUCUUGCCc 2 20 167 187 [ce6:II:8066040-8066060:+] 0.4908 153 7 -15.60 -0.3941 MIMAT0000058 cel-miR-85 174295 ufd-2 cgUGCUGA-AAAGUUUAUGAAACAu | || | | | : |||||||| aaAAGAAUGUAUGUGUUACUUUGUa 2 23 1077 1101 [ce6:II:8067029-8067053:+] 0.7945 149 7 -12.07 -1.2050 MIMAT0000059 cel-miR-86 174295 ufd-2 cuGA-CACCGUUUCGUAAGUGAAu || || | |: ::||||||| uuCUAGUUUCUAGUUGUUCACUUu 2 22 1849 1872 [ce6:II:8067852-8067875:+] 0.5586 152 7 -10.85 -0.4469 MIMAT0000282 cel-miR-124 174295 ufd-2 accguaaguggcgCACGGAAu ||||||| aaaaacacgaguaGUGCCUUg 2 9 204 224 [ce6:II:8066077-8066097:+] 0.4908 140 7 -17.49 -0.5416 MIMAT0000301 cel-miR-245 174295 ufd-2 cucgaUGAAC-CUCCCCUGGUUa ||||| | ||||||| cauaaACUUGACAAUGGACCAAa 2 18 650 672 [ce6:II:8066523-8066545:+] 0.7714 152 7 -15.77 -1.1484 MIMAT0000697 cel-miR-355 174295 ufd-2 guaUCGAGUCCGAUUUUGUUu ||:||: |||||||| agaAGUUCG---UAAAACAAg 2 19 1444 1461 [ce6:II:8067396-8067413:+] 0.7488 150 7 -13.60 -0.6471 MIMAT0000697 cel-miR-355 174295 ufd-2 guauCGAGU--CCGAUUUUGUUu |:||: || ||||||| uucuGUUCGUUUGCGAAAACAAu 2 18 1173 1195 [ce6:II:8067125-8067147:+] 0.7945 148 7 -10.61 -0.2265 MIMAT0004219 cel-miR-784 174295 ufd-2 agaugCA-UGCGUCUAACACGGu || | | || ||||||| cucugGUCAAGAAGCUUGUGCCg 2 18 802 824 [ce6:II:8066675-8066697:+] 0.8032 152 7 -16.81 -0.3096 MIMAT0004220 cel-miR-785 174295 ufd-2 agauguguuUUGUUAAGUGAAu |:: :||||||| cuaguuucuAGUUGUUCACUUu 2 14 1851 1872 [ce6:II:8067854-8067875:+] 0.5586 145 7 -8.91 -0.4469

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score ufd-2 RAID00126390 cel-miR-72-5p miRNA MIMAT0000044 ufd-2 mRNA 174295 CLIP-seq//Prediction 0.6478 ufd-2 RAID00429150 cel-miR-86-5p miRNA MIMAT0000059 ufd-2 mRNA 174295 Prediction 0.1828 ufd-2 RAID00870002 cel-miR-85-3p miRNA MIMAT0000058 ufd-2 mRNA 174295 Prediction 0.1828 ufd-2 RAID01052807 cel-miR-784-5p miRNA MIMAT0004219 ufd-2 mRNA 174295 Prediction 0.1828 ufd-2 RAID01367999 cel-miR-70-3p miRNA MIMAT0000042 ufd-2 mRNA 174295 Prediction 0.1828 ufd-2 RAID01424533 cel-miR-245-3p miRNA MIMAT0000301 ufd-2 mRNA 174295 Prediction 0.1828 ufd-2 RAID01481040 cel-miR-250-3p miRNA MIMAT0000306 ufd-2 mRNA 174295 Prediction 0.1828 ufd-2 RAID01564357 cel-miR-243-3p miRNA MIMAT0000299 ufd-2 mRNA 174295 CLIP-seq 0.5483 ufd-2 RAID01806088 cel-miR-2-3p miRNA MIMAT0000004 ufd-2 mRNA 174295 CLIP-seq//Prediction 0.6308 ufd-2 RAID01990753 cel-miR-266 miRNA MIMAT0000322 ufd-2 mRNA 174295 Prediction 0.1828 ufd-2 RAID02071863 cel-miR-74-3p miRNA MIMAT0000046 ufd-2 mRNA 174295 CLIP-seq//Prediction 0.6308 ufd-2 RAID02134501 cel-miR-785-3p miRNA MIMAT0004220 ufd-2 mRNA 174295 Prediction 0.1828 ufd-2 RAID02892659 cel-miR-73-3p miRNA MIMAT0000045 ufd-2 mRNA 174295 CLIP-seq//Prediction 0.6308 ufd-2 RAID03683515 cel-miR-355-5p miRNA MIMAT0000697 ufd-2 mRNA 174295 Prediction 0.1828 ufd-2 RAID03716284 cel-miR-124-3p miRNA MIMAT0000282 ufd-2 mRNA 174295 Prediction 0.1828