DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0015099 cel-miR-51* 175704 ulp-1 acguggACAUGGACGAAG-GUAc ||||::| |||| ||| guaaaaUGUAUUUUCUUCUCAUu 2 17 55 77 [ce6:III:5166161-5166183:-] 0.5018 128 0 -14.35 -0.5820 MIMAT0015106 cel-miR-65* 175704 ulp-1 cguaccGUGACGCGCAUCGUc ||:| : ||||||| auuuccCAUU-UUCGUAGCAu 2 16 165 184 [ce6:III:5166054-5166073:-] 0.5018 145 7 -12.12 -1.1867 MIMAT0015112 cel-miR-229* 175704 ulp-1 gauacuguGGGCUAUGGAAAGa ||: ||||||| uuucucucCCUUCCACCUUUCa 2 15 496 517 [ce6:III:5165721-5165742:-] 0.5018 142 7 -13.20 -0.8471 MIMAT0015115 cel-miR-239b* 175704 ulp-1 aaaAACGUGUGGU-GUUUUCACg || :| | | :||||||| ---UUCUAGAAGAUUAAAAGUGu 2 20 1 20 [ce6:III:5166218-5166237:-] 0.5525 146 7 -7.94 -0.7807 MIMAT0015119 cel-miR-247* 175704 ulp-1 ccAUUAAUCUUUG--AAAAGAGAu || ||| ||| |||||||| cgUAUUUAUUAACAAUUUUCUCUc 2 21 480 503 [ce6:III:5165735-5165758:-] 0.5018 163 7 -10.61 -0.8451 MIMAT0015119 cel-miR-247* 175704 ulp-1 ccauuaaucuuuGAAAAGAGAu ||||||||| ggccuuuuuucuCUUUUCUCUu 2 11 418 439 [ce6:III:5165799-5165820:-] 0.5018 150 7 -11.83 -1.0047 MIMAT0015119 cel-miR-247* 175704 ulp-1 ccauuaAUCUUUGAAAAGAGAu |:| :|||||||| gaucucUGGCCUUUUUUCUCUu 2 17 411 432 [ce6:III:5165806-5165827:-] 0.5018 148 7 -10.69 -1.0061 MIMAT0015119 cel-miR-247* 175704 ulp-1 ccAUUAAUCUU--UGAAAAGAGAu |||| || | ||||||| aaUAAUAUCAAUCAGCUUUCUCUg 2 21 529 552 [ce6:III:5165686-5165709:-] 0.5018 147 7 -10.31 -0.5881 MIMAT0015240 cel-miR-788* 175704 ulp-1 gcuAAGAUU-AGGUAAAGg ||:|:| |:|||||| aacUUUUGAUUUCAUUUCa 2 16 230 248 [ce6:III:5165990-5166008:-] 0.5018 142 6 -10.30 -0.1873 MIMAT0004235 cel-miR-800 175704 ulp-1 gccgucuguuAAAGGCUCAAAc | ||||||||| uucuuccuuuUAUCCGAGUUUu 2 13 445 466 [ce6:III:5165772-5165793:-] 0.5018 152 7 -13.24 -1.0394 MIMAT0011425 cel-miR-2207 175704 ulp-1 gaAUAUGUGUCAGAGUUAAGUGu || | | ||| :||||||: auUA-AAAGUGUCAUAAUUCAUa 2 22 10 31 [ce6:III:5166207-5166228:-] 0.5018 139 0 -11.82 -0.1316 MIMAT0011434 cel-miR-2209c 175704 ulp-1 acaucacauuggccacCAGAAAa |||||| ccgaaucaucuagaaaGUCUUUa 2 8 117 139 [ce6:III:5166099-5166121:-] 0.5018 120 6 -7.17 -0.1555 MIMAT0011456 cel-miR-2218a* 175704 ulp-1 auguuuGAUGUGAUA-AGACCGGa ||::: || ||||||| uugucuCUGUG-GAUCUCUGGCCu 2 18 400 422 [ce6:III:5165816-5165838:-] 0.5018 142 7 -17.09 -0.8283 MIMAT0011463 cel-miR-2221 175704 ulp-1 ugaucgccagaccAUAGUGAAc |||||||| gaucacaucacauUAUCACUUg 2 10 300 321 [ce6:III:5165917-5165938:-] 0.5018 145 7 -11.62 -0.4142 MIMAT0014446 cel-miR-2953-5p 175704 ulp-1 uaaaAGUGCUUGUGAAGACAu || : ||: :|||||| aaagUCUUUAAU-UUUCUGUa 2 18 130 149 [ce6:III:5166089-5166108:-] 0.5018 131 6 -9.10 -0.1917 MIMAT0014447 cel-miR-2953-3p 175704 ulp-1 cgAUGUCUUCUCG-AUC-ACUAGu |||| |||| : || ||||| caUACAAAAGAUUAAAGAUGAUCg 2 21 267 290 [ce6:III:5165948-5165971:-] 0.5018 127 0 -14.11 -0.6031 MIMAT0000032 cel-miR-60 175704 ulp-1 acuugaucuuUUACACGUAUUAu | || ||||||| uuuucuucucAUUGGGCAUAAUu 2 14 65 87 [ce6:III:5166151-5166173:-] 0.5018 149 7 -8.50 -0.8272 MIMAT0000034 cel-miR-62 175704 ulp-1 gaCAUUCGA-UCUAAUGU-AUAGu || || | | || ||| |||| guGUCAGAUCACAUCACAUUAUCa 2 21 294 317 [ce6:III:5165921-5165944:-] 0.5018 123 0 -8.86 -0.5024 MIMAT0000035 cel-miR-63 175704 ulp-1 aaagguugagcgaagUCACAGUAu |||||||| uucuagaagauuaaaAGUGUCAUa 2 10 1 24 [ce6:III:5166214-5166237:-] 0.5525 145 7 -17.82 -1.0236 MIMAT0000036 cel-miR-64 175704 ulp-1 aagccauugcgaagUCACAGUAu |||||||| ucuagaagauuaaaAGUGUCAUa 2 10 2 24 [ce6:III:5166214-5166236:-] 0.5525 145 7 -13.88 -1.0180 MIMAT0000037 cel-miR-65 175704 ulp-1 aagccaaugcgaagUCACAGUAu |||||||| ucuagaagauuaaaAGUGUCAUa 2 10 2 24 [ce6:III:5166214-5166236:-] 0.5525 145 7 -13.88 -1.0180 MIMAT0000038 cel-miR-66 175704 ulp-1 aguguaggGAUUAGUCACAGUAc :||| |||||||| cuagaagaUUAA-AAGUGUCAUa 2 16 3 24 [ce6:III:5166214-5166235:-] 0.5525 149 7 -11.38 -1.0180 MIMAT0000038 cel-miR-66 175704 ulp-1 aguGUAGGGAUUAGU-CA-CAGUAc :||| || :||| || ||||| cauUAUCACUUGUCACGUGGUCAUu 2 21 310 334 [ce6:III:5165904-5165928:-] 0.5018 131 0 -14.27 -0.2395 MIMAT0000039 cel-miR-67 175704 ulp-1 agaugagaaagauccucCAACACu |||||| ucauuauccaaaauaucGUUGUGa 2 8 189 212 [ce6:III:5166026-5166049:-] 0.5018 120 6 -9.04 -0.1876 MIMAT0000042 cel-miR-70 175704 ulp-1 uaccuuugUGGUUGCUGCAUAAu |:: :|||||||| uuuauuugAUUUUUGACGUAUUu 2 16 464 486 [ce6:III:5165752-5165774:-] 0.5018 147 7 -13.90 -0.9950 MIMAT0000043 cel-miR-71 175704 ulp-1 agugaugggUACAGAAAgu | |||||| ucaucuagaAAGUCUUUaa 3 11 122 140 [ce6:III:5166098-5166116:-] 0.5018 122 0 -8.41 -0.1531 MIMAT0000284 cel-miR-229 175704 ulp-1 gcuaccUUUUCUAUUGGUCACAGUAa |:||||| | |||||||| --uucuAGAAGAUUAAAAGUGUCAUa 2 21 1 24 [ce6:III:5166214-5166237:-] 0.5525 172 7 -18.11 -1.0094 MIMAT0000304 cel-miR-248 175704 ulp-1 acucgcaauaggcacguGCACAUa |||||| uugauuucauuucauacCGUGUAa 2 8 235 258 [ce6:III:5165980-5166003:-] 0.5018 120 6 -11.66 -0.1953 MIMAT0000749 cel-lsy-6 175704 ulp-1 gcUUUACGCAGAGUAUGUUUu ||: :|| ||||||||| uaAAGAAUGU-UCAUACAAAa 2 20 256 275 [ce6:III:5165963-5165982:-] 0.5018 157 7 -14.13 -0.9727 MIMAT0004220 cel-miR-785 175704 ulp-1 agauGUGUUUUGUUA-AGUGAAu |||| ||| | |||||| agauCACAUCACAUUAUCACUUg 2 19 299 321 [ce6:III:5165917-5165939:-] 0.5018 130 6 -15.75 -0.3812 MIMAT0004221 cel-miR-786 175704 ulp-1 uaacuuguAGUAAGUCCCGUAau ||||| |||||| uuuucuucUCAUU--GGGCAUaa 3 16 65 85 [ce6:III:5166153-5166173:-] 0.5018 132 0 -11.57 -0.1955 MIMAT0004227 cel-miR-792 175704 ulp-1 agacuuucaacuucuCUAAAGUu ||||||| cuaauuauaacuuuuGAUUUCAu 2 9 222 244 [ce6:III:5165994-5166016:-] 0.5018 140 7 -5.80 -1.1342

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score ulp-1 RAID00022626 cel-miR-67-3p miRNA MIMAT0000039 ulp-1 mRNA 175704 Prediction 0.1828 ulp-1 RAID00056962 cel-miR-70-3p miRNA MIMAT0000042 ulp-1 mRNA 175704 Prediction 0.1828 ulp-1 RAID00079233 cel-miR-229-5p miRNA MIMAT0000284 ulp-1 mRNA 175704 Prediction 0.1828 ulp-1 RAID00825034 cel-miR-785-3p miRNA MIMAT0004220 ulp-1 mRNA 175704 Prediction 0.1828 ulp-1 RAID01244725 cel-miR-66-5p miRNA MIMAT0000038 ulp-1 mRNA 175704 Prediction 0.1828 ulp-1 RAID01244918 cel-lsy-6-3p miRNA MIMAT0000749 ulp-1 mRNA 175704 Prediction 0.1828 ulp-1 RAID01740266 cel-miR-248 miRNA MIMAT0000304 ulp-1 mRNA 175704 Prediction 0.1828 ulp-1 RAID01885666 cel-miR-60-3p miRNA MIMAT0000032 ulp-1 mRNA 175704 Prediction 0.1828 ulp-1 RAID02125263 cel-miR-65-5p miRNA MIMAT0000037 ulp-1 mRNA 175704 Prediction 0.1828 ulp-1 RAID02961768 cel-miR-64-5p miRNA MIMAT0000036 ulp-1 mRNA 175704 Prediction 0.1828 ulp-1 RAID03253960 cel-miR-792-3p miRNA MIMAT0004227 ulp-1 mRNA 175704 Prediction 0.1828 ulp-1 RAID03337737 cel-miR-62 miRNA MIMAT0000034 ulp-1 mRNA 175704 Prediction 0.1828 ulp-1 RAID03408280 cel-miR-63-3p miRNA MIMAT0000035 ulp-1 mRNA 175704 Prediction 0.1828 ulp-1 RAID03668146 cel-miR-71-5p miRNA MIMAT0000043 ulp-1 mRNA 175704 Prediction 0.1828 ulp-1 RAID04054994 cel-miR-786-3p miRNA MIMAT0004221 ulp-1 mRNA 175704 Prediction 0.1828