DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0015111 cel-miR-124* 176180 rfp-1 ugauuucagugaucccACGUACg |||||| cuuguuucaaaaauuaUGCAUGa 2 8 363 385 [ce6:III:8362370-8362392:+] 0.5552 120 6 -9.59 -0.4163 MIMAT0015119 cel-miR-247* 176180 rfp-1 ccauuaaucuuugAAAAGAGAu |||||||| uuucuguccuccgUUUUCUCUg 2 10 62 83 [ce6:III:8362069-8362090:+] 0.4923 145 7 -9.87 -0.3265 MIMAT0000312 cel-miR-257 176180 rfp-1 agugacccaugAGGACUAUGAg |:|||||||| uuugaauucugUUCUGAUACUc 2 12 202 223 [ce6:III:8362209-8362230:+] 0.4923 151 7 -17.87 -0.4726 MIMAT0000313 cel-miR-258 176180 rfp-1 uuuuccUAAGG--AGAGUUUUgg ||||: |:|||||| auaguuAUUCUUGUUUCAAAAau 3 16 354 376 [ce6:III:8362361-8362383:+] 0.4923 134 0 -8.79 -0.1041 MIMAT0000324 cel-miR-268 176180 rfp-1 ugGUUUGACGAAGAUUAAGAACGg :| | | | | |||||||: ugUAUAGUAAUAGUUAUUCUUGUu 2 23 345 368 [ce6:III:8362352-8362375:+] 0.4923 134 0 -8.13 -0.1381 MIMAT0000326 cel-miR-270 176180 rfp-1 gaggugacgaUGUAGUACGg | ||:|||| cuuguuucaaAAAUUAUGCa 2 11 363 382 [ce6:III:8362370-8362389:+] 0.5552 126 0 -10.21 -0.1063 MIMAT0015239 cel-miR-786* 176180 rfp-1 cauuuAUGGGGUUGACUAUAAgc |::: |::||||||| aacuuUGUUGAAGUUGAUAUUga 3 19 272 294 [ce6:III:8362279-8362301:+] 0.4923 134 0 -10.38 -0.2330 MIMAT0005031 cel-miR-1018 176180 rfp-1 gacauucagguuacUAGAGAGa ||||||| uccucauuuucucaAUCUCUCa 2 9 28 49 [ce6:III:8362035-8362056:+] 0.4923 140 7 -9.48 -1.1177 MIMAT0005522 cel-miR-1021 176180 rfp-1 ggcuccuAAAGUGUACUAGAGUGAa || ::: | |||||:| uaaauucUUAUGUUUUUUCUCAUUu 2 19 311 335 [ce6:III:8362318-8362342:+] 0.4923 130 0 -13.11 -0.1044 MIMAT0006587 cel-miR-1820 176180 rfp-1 cuUGUAGUAGCUUUUUGUUAGUUUu :||| || || || |||||| auGCAUGAU-GAUAAUAUAUCAAAg 2 24 378 401 [ce6:III:8362385-8362408:+] 0.5552 133 6 -11.48 -0.1723 MIMAT0011447 cel-miR-2216 176180 rfp-1 cggauggcUGAAUUUUACAcg |:| ||||||| cucauuuuAUUAAAAAUGUau 3 14 329 349 [ce6:III:8362336-8362356:+] 0.4923 133 0 -4.57 -0.1407 MIMAT0000049 cel-miR-77 176180 rfp-1 accUGUCGAUACCGGACUACUu | | :||| || |||||| ucaAAAAUUAU-GCAUGAUGAu 2 20 369 389 [ce6:III:8362376-8362396:+] 0.5552 129 6 -11.08 -0.1832 MIMAT0000058 cel-miR-85 176180 rfp-1 cgUGCUGAAAAGUUUAUGAAACAu || | ||| ::| ||||||| ccACAAGUUUAUGA--ACUUUGUu 2 23 259 280 [ce6:III:8362266-8362287:+] 0.4923 155 7 -10.52 -0.8102 MIMAT0000768 cel-miR-392 176180 rfp-1 aguAGUGUGCACUA---GCUACUAu ||| | | || :|||||| guuUCAAAAAUUAUGCAUGAUGAUa 2 20 366 390 [ce6:III:8362373-8362397:+] 0.5552 130 6 -11.76 -0.1906

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score rfp-1 RAID00000988 cel-miR-392-3p miRNA MIMAT0000768 rfp-1 mRNA 176180 Prediction 0.1828 bre-1 RAID00024886 cel-miR-797-5p miRNA MIMAT0004232 bre-1 mRNA 177717 Prediction 0.2381 bre-1 RAID00025863 cel-miR-48-5p miRNA MIMAT0000019 bre-1 mRNA 177717 Prediction 0.1828 rfp-1 RAID00110751 cel-miR-4813-3p miRNA MIMAT0020001 rfp-1 mRNA 176180 Prediction 0.1828 bre-1 RAID00526665 cel-miR-77-3p miRNA MIMAT0000049 bre-1 mRNA 177717 Prediction 0.1828 bre-1 RAID00594901 cel-miR-241-5p miRNA MIMAT0000297 bre-1 mRNA 177717 Prediction 0.1828 bre-1 RAID01155413 cel-miR-79-3p miRNA MIMAT0000051 bre-1 mRNA 177717 Prediction 0.1828 bre-1 RAID01694145 cel-miR-795-5p miRNA MIMAT0004230 bre-1 mRNA 177717 Prediction 0.1828 rfp-1 RAID01901920 cel-miR-77-3p miRNA MIMAT0000049 rfp-1 mRNA 176180 Prediction 0.1828 bre-1 RAID02212232 cel-miR-75-3p miRNA MIMAT0000047 bre-1 mRNA 177717 Prediction 0.1828 bre-1 RAID02450859 cel-miR-250-3p miRNA MIMAT0000306 bre-1 mRNA 177717 Prediction 0.2202 bre-1 RAID02694146 cel-miR-392-3p miRNA MIMAT0000768 bre-1 mRNA 177717 Prediction 0.1828 bre-1 RAID02772054 cel-miR-2-3p miRNA MIMAT0000004 bre-1 mRNA 177717 Prediction 0.2202 bre-1 RAID03095203 cel-miR-84-5p miRNA MIMAT0000057 bre-1 mRNA 177717 Prediction 0.1828 rfp-1 RAID03215729 cel-miR-85-3p miRNA MIMAT0000058 rfp-1 mRNA 176180 Prediction 0.1828 bre-1 RAID03395023 cel-let-7-5p miRNA MIMAT0000001 bre-1 mRNA 177717 Prediction 0.1828 bre-1 RAID03868010 cel-miR-43-3p miRNA MIMAT0000014 bre-1 mRNA 177717 Prediction 0.2202