DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0015121 cel-miR-360* 182681 rnf-121 acuggcAUUG-UUGCCAGUGUu || | ||: |||||| caaaguUAUCAAAUAGUCACAa 2 16 61 82 [ce6:III:4168980-4169001:-] 0.4583 122 6 -12.39 -0.2182 MIMAT0004235 cel-miR-800 182681 rnf-121 gccgUCUGUUAAAGGCUCAAAc | | || || ||| ||| ugaaAAAAAAAUUACGACUUUa 2 19 187 208 [ce6:III:4168854-4168875:-] 0.4554 126 0 -4.52 -0.1018 MIMAT0005032 cel-miR-1019 182681 rnf-121 gaccuuucguuacaccUUAAUGUc ||||||: auuucuuugaaaaaaaAAUUACGa 2 9 180 203 [ce6:III:4168859-4168882:-] 0.4554 124 0 -4.72 -0.1765 MIMAT0006586 cel-miR-1819 182681 rnf-121 agGUAGUUCGAGUUAGUAAGGu || ||| : :||||||| caCA-CAAAAAUUGUCAUUCCa 2 21 86 106 [ce6:III:4168956-4168976:-] 0.4583 146 7 -15.01 -1.1425 MIMAT0011428 cel-miR-2208a* 182681 rnf-121 acuUCAUAUGGUCUUUGACGUa | || |:: ||||||| uuuAAUA-AUUUCUAACUGCAu 2 20 38 58 [ce6:III:4169004-4169024:-] 0.4583 141 7 -10.39 -0.9715 MIMAT0011436 cel-miR-2210* 182681 rnf-121 cacccaUCUCGUUA--GCUGAAAu | | ||| ||||||| uuugaaAAAAAAAUUACGACUUUa 2 17 185 208 [ce6:III:4168854-4168877:-] 0.4554 143 7 -11.38 -1.2983 MIMAT0011462 cel-miR-2220 182681 rnf-121 gacauucagguguuuGUUAACu |||||| caaaaauugucauucCAAUUGc 2 8 90 111 [ce6:III:4168951-4168972:-] 0.4583 120 6 -8.01 -0.1667 MIMAT0000003 cel-miR-1 182681 rnf-121 auguaugaagaaauGUAAGGu |||||| cacacaaaaauuguCAUUCCa 2 8 86 106 [ce6:III:4168956-4168976:-] 0.4583 120 6 -10.33 -0.1865 MIMAT0000059 cel-miR-86 182681 rnf-121 cugacaccguuucguAAGUGAAu ||:|||| cuuuuuauuuuaauuUUUACUUa 2 9 5 27 [ce6:III:4169035-4169057:-] 0.5549 124 0 -5.33 -0.1181 MIMAT0000287 cel-miR-232 182681 rnf-121 agUGGC-GUCAAUUCUACGUAAAu |::| || | | ||||||| aaAUUGUCAUUCCAAUUGCAUUUu 2 22 93 116 [ce6:III:4168946-4168969:-] 0.4583 148 7 -8.87 -1.1498 MIMAT0000305 cel-miR-249 182681 rnf-121 ccguugcgaguuuucAGGACAcu |||||| gacuuuauuuauucuUCCUGUuu 3 9 202 224 [ce6:III:4168838-4168860:-] 0.4525 120 0 -8.70 -0.1486 MIMAT0000307 cel-miR-251 182681 rnf-121 uuauucucgccgUGGUGAUGAAUu |:: :|||||| cuuuuuauuuuaAUUUUUACUUAu 2 13 5 28 [ce6:III:4169034-4169057:-] 0.5549 128 6 -7.57 -0.2665 MIMAT0000308 cel-miR-252 182681 rnf-121 aauggacgccgUGAUGAUGAAUa |:| :|||||| uuuuuauuuuaAUUUUUACUUAu 2 13 6 28 [ce6:III:4169034-4169056:-] 0.5549 132 6 -8.81 -0.2665 MIMAT0000699 cel-miR-357 182681 rnf-121 ugaggacguugcugacCGUAAAu |||||| aauugucauuccaauuGCAUUUu 2 8 94 116 [ce6:III:4168946-4168968:-] 0.4583 120 6 -7.95 -0.1236 MIMAT0004220 cel-miR-785 182681 rnf-121 agAUGUGUUUUGUUAAGUGAAu ||: : || : ||:|||| uuUAUUUUAAUU--UUUACUUa 2 21 8 27 [ce6:III:4169035-4169054:-] 0.5549 125 0 -6.82 -0.1093 MIMAT0004231 cel-miR-796 182681 rnf-121 aaugauuggaguugauGUAAGGu |||||| uacacacaaaaauuguCAUUCCa 2 8 84 106 [ce6:III:4168956-4168978:-] 0.4583 120 6 -14.46 -0.1865

DNA & RNA Element - miRNAMap Gene Name Mature miRNA Target Start Target End miRNA 3-5 Alignment Target 5-3 rnf-121; C16C10.5 cel-miR-268 145 160 UGGUUUGACGAAGAUUAAGAACGG- ||||| ||:||||| --------ACUUCU--UUUUUGCCG rnf-121; C16C10.5 cel-miR-271 148 164 UUACGAAAGGGUGGGCCGCU ||||: :|| ||| ---UCUUUUUUGCCGGGCA- rnf-121; C16C10.5 cel-miR-35 153 173 UGACGAUCAAAGGUGGGCCACU- :||| :| |||| ||||| UUUGCCGGG---CACCGGGUGAU rnf-121; C16C10.5 cel-miR-36 154 173 GUACGCUUAAAAGUGGGCCACU- ||| :: |||| ||||| -UUGCCGGG---CACCGGGUGAU rnf-121; C16C10.5 cel-miR-37 153 173 UGACGUUCACAAGUGGGCCACU- :||| :| |||| ||||| UUUGCCGGG---CACCGGGUGAU rnf-121; C16C10.5 cel-miR-38 156 173 UGAGGUCAAAAAGAGGGCCACU- ||:| | || ||||| --GCCGGG----CACCGGGUGAU rnf-121; C16C10.5 cel-miR-39 155 173 GUUCGACUAAAUGUGGGCCACU- || |: :|||| ||||| --UGCCGG---GCACCGGGUGAU rnf-121; C16C10.5 cel-miR-40 155 173 AAUCGACUACAUGUGGGCCACU- || |: :|||| ||||| --UGCCGG---GCACCGGGUGAU rnf-121; C16C10.5 cel-miR-41 165 191 AUCCACUAAAAAGU---GGGCCACU- :||||||||||| ::| ||| CGGGUGAUUUUUCUGAUUUCUUUGAA rnf-121; C16C10.5 cel-miR-42 152 173 -AGACAUCUACAAUUGGGCCACU- |:|| |: ||| ||||| UUUUGCCGGGC---ACCGGGUGAU rnf-121; C16C10.5 cel-miR-789 156 170 UGUUAACCACUGGGUCCGU--CCCU ||:|||| ||| -----------GCCGGGCACCGGGU rnf-121; C16C10.5 cel-miR-796 42 64 AAUGAUUGGAG-UUGAUGUAAGGU- |||::|| ||||:||| ||| ---AUAAUUUCUAACUGCAUCCCAA rnf-121; C16C10.5 cel-miR-268 137 158 ugguuugACGAAGAUUAAGAACGG | ||||| ||:||||| ttctcgtTACTTCT--TTTTTGCC rnf-121; C16C10.5 cel-miR-271 145 164 UUACGAAAGGGUGGGCCGcu | | ||||::::|| ||| ACTTCTTTTTTGCCGGGCac rnf-121; C16C10.5 cel-miR-35 145 171 UGACGAUCAAA--G---GUGGGCCACU ||| || ||| | |||| ||||| ACTTCTTTTTTGCCGGGCACCGGGTGA rnf-121; C16C10.5 cel-miR-36 150 171 guacgcuuaaaaGUGGGCCACU |||| ||||| ttttttgccgggCACCGGGTGA rnf-121; C16C10.5 cel-miR-38 145 171 UGAGGUCAAAA-----AGAGGGCCACU |||:| |||| | || ||||| ACTTCTTTTTTGCCGGGCACCGGGTGA rnf-121; C16C10.5 cel-miR-39 153 171 guuCGACUAAAUGUGGGCCACU || |: :|||| ||||| tttGCCGG---GCACCGGGTGA rnf-121; C16C10.5 cel-miR-40 150 171 AAUCGACUACAUGUGGGCCACU || :|| | :|||| ||||| TTTTTTGCCGGGCACCGGGTGA rnf-121; C16C10.5 cel-miR-41 144 171 auccacuAAAAA------GUGGGCCACU ||||| |||| ||||| tacttctTTTTTGCCGGGCACCGGGTGA rnf-121; C16C10.5 cel-miR-42 150 171 AGACAUCUACAAUUGGGCCACU |:| | | | ||| ||||| TTTTTTGCCGGGCACCGGGTGA rnf-121; C16C10.5 cel-miR-789 147 169 uguuAACCACUGGGUCCGU--CCCu || || ||:|||| ||| ttctTTTTTG--CCGGGCACCGGGt rnf-121; C16C10.5 cel-miR-796 39 62 AAUGAUUGGAG-UUGAUGUAAGGU ||| |||::|| ||||:||| ||| TTAATAATTTCTAACTGCATCCCA

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score rnf-121 RAID00338755 cel-miR-1-3p miRNA MIMAT0000003 rnf-121 mRNA 182681 Prediction 0.1828 rnf-121 RAID00702004 cel-miR-785-3p miRNA MIMAT0004220 rnf-121 mRNA 182681 Prediction 0.1828 rnf-121 RAID02135820 cel-miR-252-5p miRNA MIMAT0000308 rnf-121 mRNA 182681 Prediction 0.1828 rnf-121 RAID02210798 cel-miR-360-3p miRNA MIMAT0000702 rnf-121 mRNA 182681 Prediction 0.1828 rnf-121 RAID02321123 cel-miR-251 miRNA MIMAT0000307 rnf-121 mRNA 182681 Prediction 0.1828 rnf-121 RAID02541321 cel-miR-232-3p miRNA MIMAT0000287 rnf-121 mRNA 182681 Prediction 0.2202 rnf-121 RAID02817718 cel-miR-357-3p miRNA MIMAT0000699 rnf-121 mRNA 182681 Prediction 0.1828 rnf-121 RAID03468784 cel-miR-796 miRNA MIMAT0004231 rnf-121 mRNA 182681 Prediction 0.1828 rnf-121 RAID03597963 cel-miR-86-5p miRNA MIMAT0000059 rnf-121 mRNA 182681 Prediction 0.1828 rnf-121 RAID03695077 cel-miR-249-3p miRNA MIMAT0000305 rnf-121 mRNA 182681 Prediction 0.1828