DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0015096 cel-miR-46* 3565820 otub-1 gacaguuauCUGC-CGAGAGAa ||:| ||||||| uucucucccGAUGUGCUCUCUc 2 13 40 61 [ce6:V:15067230-15067251:+] 0.4871 147 7 -17.17 -0.7442 MIMAT0015097 cel-miR-47* 3565820 otub-1 ugacaguuauCUG-ACGAGAGAa ||: |||||||| cuucucucccGAUGUGCUCUCUc 2 13 39 61 [ce6:V:15067229-15067251:+] 0.4871 147 7 -16.59 -0.7442 MIMAT0015107 cel-miR-71* 3565820 otub-1 cgcuuuuugucuuaUCACUAu |||||| guauuuauuuugccAGUGAUa 2 8 92 112 [ce6:V:15067282-15067302:+] 0.5176 120 6 -7.72 -0.1042 MIMAT0015109 cel-miR-81* 3565820 otub-1 agagucuagugccacUUUUGGc |||||| uugcaaaauuaucucAAAACCa 2 8 124 145 [ce6:V:15067314-15067335:+] 0.5176 120 6 -8.43 -0.2895 MIMAT0000313 cel-miR-258 3565820 otub-1 uuuuccUAAGGAGAGUUUUGg | |: ||||||||| uugcaaAAUUAUCUCAAAACc 2 16 124 144 [ce6:V:15067314-15067334:+] 0.5176 155 7 -15.50 -0.9466 MIMAT0011447 cel-miR-2216 3565820 otub-1 cgGAUGGCUGAA-UUUUACAcg :| :: |:|| ||||||| aaUUUUUUAUUUAAAAAUGUag 3 20 229 250 [ce6:V:15067419-15067440:+] 0.5176 134 0 -5.86 -0.3954 MIMAT0011448 cel-miR-2216* 3565820 otub-1 uccguguaaaauucAUCUAUc |||||| ugccagugauaugcUAGAUAa 2 8 102 122 [ce6:V:15067292-15067312:+] 0.5176 120 6 -5.38 -0.1236 MIMAT0011462 cel-miR-2220 3565820 otub-1 gacauucaGGUGUUUGU-UAACu |:|| |||| |||| uuaacauaCUACUAACAUAUUGu 2 15 193 215 [ce6:V:15067383-15067405:+] 0.5176 122 0 -10.40 -1.0387 MIMAT0000017 cel-miR-46 3565820 otub-1 acUUCUCUCGCUGAGGUACUGu || | | :| |||||||: cuAACAUAUUG--UCCAUGAUu 2 21 204 223 [ce6:V:15067394-15067413:+] 0.5176 133 0 -11.02 -0.1083 MIMAT0000017 cel-miR-46 3565820 otub-1 acuucucucGCUGAGGUACUGu | | ||||||: aaauuaucuCAAAACCAUGAUu 2 14 129 150 [ce6:V:15067319-15067340:+] 0.5176 125 0 -10.15 -0.2056 MIMAT0000018 cel-miR-47 3565820 otub-1 acUUCUCUCGCGGAGGUACUGu || | | :| |||||||: cuAACAUAUUG--UCCAUGAUu 2 21 204 223 [ce6:V:15067394-15067413:+] 0.5176 133 0 -11.02 -0.1083 MIMAT0000018 cel-miR-47 3565820 otub-1 acuucucucgcggaGGUACUGu ||||||: aaauuaucucaaaaCCAUGAUu 2 9 129 150 [ce6:V:15067319-15067340:+] 0.5176 124 0 -10.15 -0.2056 MIMAT0000021 cel-miR-50 3565820 otub-1 ggguUCUUAUGGUCUGUAUAGu | | |||:| ||||||: uaacAUACUACUA-ACAUAUUg 2 19 194 214 [ce6:V:15067384-15067404:+] 0.5176 140 0 -8.91 -0.1009 MIMAT0000032 cel-miR-60 3565820 otub-1 acuugaucuuuuacacGUAUUAu |||||| ucaccacuccuuuuuuCAUAAUc 2 8 69 91 [ce6:V:15067259-15067281:+] 0.5023 120 6 -3.31 -0.1131 MIMAT0000034 cel-miR-62 3565820 otub-1 gacauucGAUCUAAUGUAUAGu ||| | ||||||: uaacauaCUA-CUAACAUAUUg 2 16 194 214 [ce6:V:15067384-15067404:+] 0.5176 129 0 -5.96 -0.1102 MIMAT0000042 cel-miR-70 3565820 otub-1 uaccuuugugguugcuGCAUAAu |||||| cuccuuuuuucauaauCGUAUUu 2 8 75 97 [ce6:V:15067265-15067287:+] 0.5023 120 6 -8.26 -0.1359 MIMAT0000061 cel-miR-90 3565820 otub-1 uccccGUAAGUUUGUUGUAUAGu ||| | | :|||||||: auuaaCAUACUACUAACAUAUUg 2 19 192 214 [ce6:V:15067382-15067404:+] 0.5176 146 0 -9.48 -0.1102 MIMAT0000296 cel-miR-240 3565820 otub-1 ucgcuucuaaaccccCGGUCAu |||||| aaucguauuuauuuuGCCAGUg 2 8 88 109 [ce6:V:15067278-15067299:+] 0.5176 120 6 -12.78 -0.1373 MIMAT0000302 cel-miR-246 3565820 otub-1 cgAGGAUGGGCUUUGUACAUu |::||::: ||| ||||| uuUUUUAUUU-AAAAAUGUAg 2 20 231 250 [ce6:V:15067421-15067440:+] 0.5176 129 0 -10.41 -0.1110 MIMAT0004215 cel-miR-253 3565820 otub-1 ggaaggguguugcgGAUGAUu |||||| ucacuauuaacauaCUACUAa 2 8 187 207 [ce6:V:15067377-15067397:+] 0.5176 120 6 -12.92 -0.1620 MIMAT0000310 cel-miR-254 3565820 otub-1 ggaUGU-CAGCGCUUUCUAAACgu ||| |:|: | |||||| cuaACAUAUUGUCCAUGAUUUGaa 3 21 204 227 [ce6:V:15067394-15067417:+] 0.5176 131 0 -8.83 -0.2563 MIMAT0000701 cel-miR-359 3565820 otub-1 aagcagucucuuucUGGUCACu :|||||| aucguauuuauuuuGCCAGUGa 2 9 89 110 [ce6:V:15067279-15067300:+] 0.5176 124 6 -17.69 -0.3125 MIMAT0004227 cel-miR-792 3565820 otub-1 agacuuucAACUUCUCUAAAGUu ||| : :||||||| aauuguuuUUGUGUGGAUUUCAc 2 16 168 190 [ce6:V:15067358-15067380:+] 0.5176 151 7 -9.87 -0.8305

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score otub-1 RAID00240551 cel-miR-60-3p miRNA MIMAT0000032 otub-1 mRNA 3565820 Prediction 0.1828 otub-1 RAID00698046 cel-miR-70-3p miRNA MIMAT0000042 otub-1 mRNA 3565820 Prediction 0.1828 otub-1 RAID00804328 cel-miR-50-5p miRNA MIMAT0000021 otub-1 mRNA 3565820 Prediction 0.1828 otub-1 RAID01695667 cel-miR-71-3p miRNA MIMAT0015107 otub-1 mRNA 3565820 Prediction 0.1828 otub-1 RAID01954358 cel-miR-792-3p miRNA MIMAT0004227 otub-1 mRNA 3565820 Prediction 0.1828 otub-1 RAID01960249 cel-miR-240-3p miRNA MIMAT0000296 otub-1 mRNA 3565820 Prediction 0.1828 otub-1 RAID02517118 cel-miR-62 miRNA MIMAT0000034 otub-1 mRNA 3565820 Prediction 0.1828 otub-1 RAID02545695 cel-miR-46-3p miRNA MIMAT0000017 otub-1 mRNA 3565820 Prediction 0.1828 otub-1 RAID02850477 cel-miR-47-3p miRNA MIMAT0000018 otub-1 mRNA 3565820 Prediction 0.1828 otub-1 RAID03154039 cel-miR-90-3p miRNA MIMAT0000061 otub-1 mRNA 3565820 Prediction 0.1828 otub-1 RAID03481189 cel-miR-253-3p miRNA MIMAT0004215 otub-1 mRNA 3565820 Prediction 0.1828 otub-1 RAID03797025 cel-miR-359 miRNA MIMAT0000701 otub-1 mRNA 3565820 Prediction 0.2202 otub-1 RAID03877951 cel-miR-254-3p miRNA MIMAT0000310 otub-1 mRNA 3565820 Prediction 0.1828 otub-1 RAID04013374 cel-miR-246-3p miRNA MIMAT0000302 otub-1 mRNA 3565820 Prediction 0.1828