DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0015096 cel-miR-46* 259497 C46F11.6 gacaguuaucugccGAGAGAa |||||| augauuuuuuuugcCUCUCUa 2 8 41 61 [ce6:III:3667642-3667662:-] 0.5658 120 6 -9.37 -0.1472 MIMAT0015096 cel-miR-46* 259497 C46F11.6 gacaguuaucugccGAGAGAa |||||| uucuuucugaaaucCUCUCUc 2 8 161 181 [ce6:III:3667522-3667542:-] 0.6039 120 6 -10.60 -0.1114 MIMAT0015097 cel-miR-47* 259497 C46F11.6 ugacaguuaucugacGAGAGAa |||||| gaugauuuuuuuugcCUCUCUa 2 8 40 61 [ce6:III:3667642-3667663:-] 0.5658 120 6 -10.16 -0.1472 MIMAT0015097 cel-miR-47* 259497 C46F11.6 ugacaguuaucugacGAGAGAa |||||| uuucuuucugaaaucCUCUCUc 2 8 160 181 [ce6:III:3667522-3667543:-] 0.6039 120 6 -10.77 -0.1114 MIMAT0015099 cel-miR-51* 259497 C46F11.6 acGUGGACAUGGACG-AAGGUAc | ::| | ||| | |||||| uuCUUUUAUUCCUUCAUUCCAUc 2 21 231 253 [ce6:III:3667450-3667472:-] 0.6039 124 6 -10.25 -0.9313 MIMAT0015099 cel-miR-51* 259497 C46F11.6 acguggacauggacGAAGGUac |||||| acuuuaagaccaaaCUUCCAga 3 9 120 141 [ce6:III:3667562-3667583:-] 0.6039 120 0 -13.64 -0.2565 MIMAT0015102 cel-miR-60* 259497 C46F11.6 uaAAAUAC-CGUGAGAAGGUCaa |||| | || ||||||| acUUUAAGACCAAACUUCCAGaa 3 21 120 142 [ce6:III:3667561-3667583:-] 0.6039 139 0 -12.60 -0.1458 MIMAT0015113 cel-miR-230* 259497 C46F11.6 auUAUAAUUUAGCGG----CUGGUUca | :||||| : |: |||||| aaAAGUUAAACUACUUUAAGACCAAac 3 22 108 134 [ce6:III:3667569-3667595:-] 0.5849 128 0 -10.28 -0.1392 MIMAT0015114 cel-miR-238* 259497 C46F11.6 cgaaacUUGCAGG-CUCUUGUAGGu ||| ||| || ||||||| agaccaAACUUCCAGAAAACAUCCc 2 19 126 150 [ce6:III:3667553-3667577:-] 0.6039 165 7 -16.78 -1.2074 MIMAT0015115 cel-miR-239b* 259497 C46F11.6 aaAAACGUGUGGUGUUUUCAcg ||||: |: :|||||| auUUUGU---CUUUAAAAGUua 3 21 97 115 [ce6:III:3667588-3667606:-] 0.5658 128 0 -7.47 -0.1898 MIMAT0015116 cel-miR-240* 259497 C46F11.6 guAAGAUCAGAGUUUUAGGAGc |||| ||| :|||||||| cuUUCU-UUCU-GAAAUCCUCu 2 21 159 178 [ce6:III:3667525-3667544:-] 0.6039 160 7 -14.59 -0.9814 MIMAT0015119 cel-miR-247* 259497 C46F11.6 ccauuaaucuuugaAAAGAGAu ||||||| ccucuuucuuuuucUUUCUCUg 2 9 62 83 [ce6:III:3667620-3667641:-] 0.5658 140 7 -8.41 -0.5884 MIMAT0000311 cel-miR-256 259497 C46F11.6 augucAGAAGAU----ACGUAAGGu ||||:|| | |||||| guguuUCUUUUAUUCCUUCAUUCCa 2 17 227 251 [ce6:III:3667452-3667476:-] 0.6039 123 6 -14.58 -0.1335 MIMAT0004228 cel-miR-793 259497 C46F11.6 agacagauugauucuAUGGAGu |||||| uuuuuuuugccucucUACCUCu 2 8 45 66 [ce6:III:3667637-3667658:-] 0.5658 120 6 -9.62 -0.1196 MIMAT0004229 cel-miR-794 259497 C46F11.6 ucacuguugcuacuaAUGGAGu |||||| uuuuuuuugccucucUACCUCu 2 8 45 66 [ce6:III:3667637-3667658:-] 0.5658 120 6 -7.18 -0.1232 MIMAT0006585 cel-miR-1818 259497 C46F11.6 uuuuaguaccGUACUUCUGGUgu | | ||||||| aguuaaacuaCUUUAAGACCAaa 3 14 111 133 [ce6:III:3667570-3667592:-] 0.5849 129 0 -9.73 -0.1797 MIMAT0006586 cel-miR-1819 259497 C46F11.6 agGUAGUUCGAGUUAGUAAGGu | |: | :|| ||||||| uuCUUUUA-UUCCUUCAUUCCa 2 21 231 251 [ce6:III:3667452-3667472:-] 0.6039 146 7 -15.03 -1.1895 MIMAT0006590 cel-miR-1823 259497 C46F11.6 aaUGAGGAUUUG---UGAAGGUCau |||:: |:|| |||||||| cuACUUUAAGACCAAACUUCCAGaa 3 21 118 142 [ce6:III:3667561-3667585:-] 0.5849 143 0 -18.67 -0.1286 MIMAT0006768 cel-miR-1828 259497 C46F11.6 ugAUAGUGAAUUUACGAAGGUCa || || ||| ||||||| uuUAAGAC-CAAA--CUUCCAGa 2 22 122 141 [ce6:III:3667562-3667581:-] 0.6039 144 7 -12.04 -1.2771 MIMAT0011434 cel-miR-2209c 259497 C46F11.6 acaucacauuggccacCAGAAAa |||||| cuuuucugggaauuuuGUCUUUa 2 8 86 108 [ce6:III:3667595-3667617:-] 0.5658 120 6 -9.28 -0.2178 MIMAT0011435 cel-miR-2210 259497 C46F11.6 ggauuuuuaacuaacuAGACGGa |||||| cuuuuugcgucuucuuUCUGCCa 2 8 297 319 [ce6:III:3667384-3667406:-] 0.5655 120 6 -8.19 -0.1610 MIMAT0011439 cel-miR-2212 259497 C46F11.6 guuucagucggauacuAGACGGu |||||| cuuuuugcgucuucuuUCUGCCa 2 8 297 319 [ce6:III:3667384-3667406:-] 0.5655 120 6 -17.23 -0.1564 MIMAT0011444 cel-miR-2214 259497 C46F11.6 uugcggccAGUUCAACAACAGUUAc ||: || |||||||| ucauuccaUCGUUUUCUUGUCAAUu 2 18 244 268 [ce6:III:3667435-3667459:-] 0.6039 157 7 -12.48 -1.0330 MIMAT0011456 cel-miR-2218a* 259497 C46F11.6 auguuuGAUGUGAUA-AGACCGGa :| : || | ||||||| ucuuucUUUUUCUUUCUCUGGCCu 2 18 64 87 [ce6:III:3667616-3667639:-] 0.5658 144 7 -16.28 -0.9933 MIMAT0014446 cel-miR-2953-5p 259497 C46F11.6 uaaAAGUGCUUGUGAAGACAu ||| :| : ||||||| aaaUUC-UGUGAUCUUCUGUu 2 19 319 338 [ce6:III:3667365-3667384:-] 0.5655 144 7 -14.20 -0.9204 MIMAT0000001 cel-let-7 259497 C46F11.6 uuGAUAUGUUGGA-UGAUGGAGu :| | : :||| ||||||| auUUUUUUUGCCUCUCUACCUCu 2 21 44 66 [ce6:III:3667637-3667659:-] 0.5658 147 7 -15.76 -1.1318 MIMAT0000003 cel-miR-1 259497 C46F11.6 auguauGAAG---AAAUGUAAGgu |||| | ||||||| -----uCUUCGGAUCUACAUUCaa 3 16 1 19 [ce6:III:3667684-3667702:-] 0.5658 130 0 -11.06 -0.2324 MIMAT0000003 cel-miR-1 259497 C46F11.6 auguaugaagaaauGUAAGGu |||||| uucuuuuauuccuuCAUUCCa 2 8 231 251 [ce6:III:3667452-3667472:-] 0.6039 120 6 -11.65 -0.1348 MIMAT0000004 cel-miR-2 259497 C46F11.6 cguguaGUUUCGACCGACACUAu |||| :| ||||||| uucugcCAAA-UU--CUGUGAUc 2 18 312 331 [ce6:III:3667372-3667391:-] 0.5655 144 7 -9.30 -0.8313 MIMAT0000014 cel-miR-43 259497 C46F11.6 cgcugucguucaUUU--GACACUAu ||| ||||||| cuucuuucugccAAAUUCUGUGAUc 2 12 307 331 [ce6:III:3667372-3667396:-] 0.5655 142 7 -9.92 -0.8585 MIMAT0000019 cel-miR-48 259497 C46F11.6 agcgUAGAUGACUCG----GAUGGAGu ||:| :| || ||||||| gaugAUUUUUUUUGCCUCUCUACCUCu 2 20 40 66 [ce6:III:3667637-3667663:-] 0.5658 142 7 -15.95 -1.1318 MIMAT0000043 cel-miR-71 259497 C46F11.6 agugaUGGGUACAGAAAgu | :: ||||||| cugggAAUUUUGUCUUUaa 3 15 91 109 [ce6:III:3667594-3667612:-] 0.5658 126 0 -7.58 -0.1620 MIMAT0000057 cel-miR-84 259497 C46F11.6 auguuAUAAUGUA-UGAUGGAGu | ||:| | ||||||| auuuuUUUUGCCUCUCUACCUCu 2 18 44 66 [ce6:III:3667637-3667659:-] 0.5658 148 7 -12.13 -1.1275 MIMAT0000297 cel-miR-241 259497 C46F11.6 aguAAAGAGCG--UGGAUGGAGu |||:|:|| :||||||| auuUUUUUUGCCUCUCUACCUCu 2 19 44 66 [ce6:III:3667637-3667659:-] 0.5658 157 7 -19.15 -1.1275 MIMAT0000301 cel-miR-245 259497 C46F11.6 cucgaugaaccucccCUGGUUa |||||| guuaaacuacuuuaaGACCAAa 2 8 112 133 [ce6:III:3667570-3667591:-] 0.5849 120 6 -13.57 -0.2092 MIMAT0000306 cel-miR-250 259497 C46F11.6 acGGUUGUCAACUGACACUAa |||| | || ||||||| ugCCAA-A-UU--CUGUGAUc 2 20 315 331 [ce6:III:3667372-3667388:-] 0.5655 144 7 -16.20 -0.8384 MIMAT0000307 cel-miR-251 259497 C46F11.6 uuAUUCUCGCCGUGGUGAUGAAuu ||| ||: :| ||||||| uuUAAAAGU--UA-AACUACUUua 3 23 105 125 [ce6:III:3667578-3667598:-] 0.5849 129 0 -11.09 -0.1217 MIMAT0000308 cel-miR-252 259497 C46F11.6 aauggacgccgugaUGAUGAAua ||||||| ucuuuaaaaguuaaACUACUUua 3 10 103 125 [ce6:III:3667578-3667600:-] 0.5849 125 0 -9.05 -0.1217 MIMAT0000768 cel-miR-392 259497 C46F11.6 agUAGUGUGC-ACUAGCUACUAu ||:: |:| | |||||||| uuAUUG-AUGAUUUUCGAUGAUu 2 21 25 46 [ce6:III:3667657-3667678:-] 0.5658 149 7 -12.74 -1.2583 MIMAT0004225 cel-miR-790 259497 C46F11.6 gcgccacaagcgcucACGGUUc |||||| uuugcgucuucuuucUGCCAAa 2 8 300 321 [ce6:III:3667382-3667403:-] 0.5655 120 6 -12.66 -0.1629 MIMAT0004226 cel-miR-791 259497 C46F11.6 acggaauagacgccucACGGUUu |||||| uuuugcgucuucuuucUGCCAAa 2 8 299 321 [ce6:III:3667382-3667404:-] 0.5655 120 6 -12.75 -0.1629 MIMAT0004230 cel-miR-795 259497 C46F11.6 uucGAGCGACUAGUUAGAUGGAGu :|: :| : | |||||||| gauUUUUUUUGCCUCUCUACCUCu 2 22 43 66 [ce6:III:3667637-3667660:-] 0.5658 149 7 -15.64 -1.1318 MIMAT0004231 cel-miR-796 259497 C46F11.6 aaugauuGGAG--UUGAUGUAAGgu |:|| | |||||||| ------uCUUCGGAUCUACAUUCaa 3 17 1 19 [ce6:III:3667684-3667702:-] 0.5658 135 0 -16.61 -0.2304 MIMAT0004231 cel-miR-796 259497 C46F11.6 aaugauuggaguugauGUAAGGu |||||| guuucuuuuauuccuuCAUUCCa 2 8 229 251 [ce6:III:3667452-3667474:-] 0.6039 120 6 -12.84 -0.1375 MIMAT0004232 cel-miR-797 259497 C46F11.6 agAAGAGUAAC-ACUAACGACACUAu ||||: || | | ||||||| ucUUCUUUCUGCCAAAUUCUGUGAUc 2 24 306 331 [ce6:III:3667372-3667397:-] 0.5655 154 7 -17.71 -0.8655

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score C46F11.6 RAID00030131 cel-let-7-5p miRNA MIMAT0000001 C46F11.6 mRNA 259497 Prediction 0.1828 C46F11.6 RAID00119506 cel-miR-245-3p miRNA MIMAT0000301 C46F11.6 mRNA 259497 Prediction 0.1828 C46F11.6 RAID00153000 cel-miR-251 miRNA MIMAT0000307 C46F11.6 mRNA 259497 Prediction 0.1828 C46F11.6 RAID00615614 cel-miR-48-5p miRNA MIMAT0000019 C46F11.6 mRNA 259497 Prediction 0.1828 C46F11.6 RAID01341336 cel-miR-791-3p miRNA MIMAT0004226 C46F11.6 mRNA 259497 CLIP-seq//Prediction 0.6308 C46F11.6 RAID01465409 cel-miR-84-5p miRNA MIMAT0000057 C46F11.6 mRNA 259497 Prediction 0.2202 C46F11.6 RAID01634653 cel-miR-241-5p miRNA MIMAT0000297 C46F11.6 mRNA 259497 Prediction 0.1828 C46F11.6 RAID02064291 cel-miR-392-3p miRNA MIMAT0000768 C46F11.6 mRNA 259497 Prediction 0.1828 C46F11.6 RAID02492897 cel-miR-71-5p miRNA MIMAT0000043 C46F11.6 mRNA 259497 Prediction 0.2202 C46F11.6 RAID02566905 cel-miR-252-5p miRNA MIMAT0000308 C46F11.6 mRNA 259497 Prediction 0.1828 C46F11.6 RAID02727085 cel-miR-250-3p miRNA MIMAT0000306 C46F11.6 mRNA 259497 CLIP-seq//Prediction 0.6478 C46F11.6 RAID02770674 cel-miR-1-3p miRNA MIMAT0000003 C46F11.6 mRNA 259497 Prediction 0.1828 C46F11.6 RAID02940929 cel-miR-795-5p miRNA MIMAT0004230 C46F11.6 mRNA 259497 Prediction 0.1828 C46F11.6 RAID02958214 cel-miR-796 miRNA MIMAT0004231 C46F11.6 mRNA 259497 Prediction 0.1828 C46F11.6 RAID03215616 cel-miR-787-3p miRNA MIMAT0004222 C46F11.6 mRNA 259497 Prediction 0.1828 C46F11.6 RAID03217793 cel-miR-2-3p miRNA MIMAT0000004 C46F11.6 mRNA 259497 CLIP-seq//Prediction 0.6478 C46F11.6 RAID03524164 cel-miR-43-3p miRNA MIMAT0000014 C46F11.6 mRNA 259497 CLIP-seq//Prediction 0.6478 C46F11.6 RAID03811398 cel-miR-797-5p miRNA MIMAT0004232 C46F11.6 mRNA 259497 CLIP-seq//Prediction 0.6559 C46F11.6 RAID03889839 cel-miR-790-5p miRNA MIMAT0004225 C46F11.6 mRNA 259497 CLIP-seq//Prediction 0.6308