DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0015114 cel-miR-238* 179836 C56A3.4 cgAAACUUGCAGGCUCUUGUAGGu ||| || || | ||||||| uaUUUUAA-AUC--AAAACAUCCa 2 23 29 49 [ce6:V:13550647-13550667:-] 0.4953 149 7 -11.51 -1.2916 MIMAT0015119 cel-miR-247* 179836 C56A3.4 ccauUAAUCUUUGAAAAGAGAu ||| | || ||||| | auccAUU-UACACAUUUCUGUa 2 19 8 28 [ce6:V:13550668-13550688:-] 0.6116 120 0 -7.38 -0.1213 MIMAT0000313 cel-miR-258 179836 C56A3.4 uuuuccuAAGGAGAGUUUUGg ||: ||||||| uguauauUUUAAAUCAAAACa 2 15 25 45 [ce6:V:13550651-13550671:-] 0.4953 142 7 -8.28 -1.2929 MIMAT0000328 cel-miR-272 179836 C56A3.4 guuuGUGGGUACGGAUGu || || ||||||| uuucCAACC-UGCCUACc 2 15 51 67 [ce6:V:13550629-13550645:-] 0.4953 148 7 -14.15 -0.6945 MIMAT0015240 cel-miR-788* 179836 C56A3.4 gcuaAGAUUAGGUAAAgg || |||||||| -uuaUCAUAUCCAUUUac 3 15 1 17 [ce6:V:13550679-13550695:-] 0.7278 134 0 -8.92 -0.6569 MIMAT0015240 cel-miR-788* 179836 C56A3.4 gcuaagauuagGUAAAGg |||||| auccauuuacaCAUUUCu 2 8 8 25 [ce6:V:13550671-13550688:-] 0.6116 120 6 -7.86 -0.1376 MIMAT0005523 cel-miR-1022 179836 C56A3.4 cuaccgcaggaUUGUUACUAGAa ||:| |||||| caauucuguuaAAUAUUGAUCUa 2 13 135 157 [ce6:V:13550539-13550561:-] 0.4953 124 6 -10.40 -0.2810 MIMAT0006587 cel-miR-1820 179836 C56A3.4 cuUGUAGUAGCUUUUUG---UUAGUUUu ||||: :| | | : ||||||| acACAUUUCUGUAUAUUUUAAAUCAAAa 2 24 16 43 [ce6:V:13550653-13550680:-] 0.6116 146 7 -11.14 -1.3186 MIMAT0015266 cel-miR-1822* 179836 C56A3.4 cggcuaucgaaagggucUCUUUGa |||||| auauugaucuaaaaauuAGAAACu 2 8 147 170 [ce6:V:13550526-13550549:-] 0.4953 120 6 -9.69 -0.1139 MIMAT0006776 cel-miR-1834 179836 C56A3.4 aaccuAGAGUUACCAACUAGAga | |:|| ||||||| aauucUGUUAAAUAUUGAUCUaa 3 19 136 158 [ce6:V:13550538-13550560:-] 0.4953 134 0 -7.77 -0.2523 MIMAT0011427 cel-miR-2208a 179836 C56A3.4 ccuAUAGU--CUAAGCCCAUG-UGAa | ||| ||| || |||| ||| aguUUUCAUUGAUGCGUGUACGACUu 2 21 97 122 [ce6:V:13550574-13550599:-] 0.4953 127 0 -12.72 -0.5980 MIMAT0011429 cel-miR-2208b-5p 179836 C56A3.4 ccuAUAGU--CUAGGCCCAUG-UGAa | ||| ||| || |||| ||| aguUUUCAUUGAUGCGUGUACGACUu 2 21 97 122 [ce6:V:13550574-13550599:-] 0.4953 127 0 -14.76 -0.5980 MIMAT0011431 cel-miR-2209a* 179836 C56A3.4 cuuccucuucucaccAAUGUGag |||||| --uuaucauauccauUUACACau 3 9 1 21 [ce6:V:13550675-13550695:-] 0.6116 120 0 -6.57 -0.1569 MIMAT0011432 cel-miR-2209a 179836 C56A3.4 acaucAC-AUUGGCGACUAGAga || ||| : :|||||| aauucUGUUAAAUAUUGAUCUaa 3 18 136 158 [ce6:V:13550538-13550560:-] 0.4953 132 0 -8.70 -0.2523 MIMAT0011433 cel-miR-2209c* 179836 C56A3.4 uuuguucUGCACGCCAAUGUGag |: | | |||||| --uuaucAUAUCCAUUUACACau 3 17 1 21 [ce6:V:13550675-13550695:-] 0.6116 124 0 -3.89 -0.1569 MIMAT0011436 cel-miR-2210* 179836 C56A3.4 cacccauCUCGUUAGCUGAAAu | |:: ||||||| cauugauGCGUGUACGACUUUu 2 16 103 124 [ce6:V:13550572-13550593:-] 0.4953 143 7 -12.45 -0.7621 MIMAT0011453 cel-miR-2209b* 179836 C56A3.4 cuuccucuucucaacAAUGUGa |||||| --uuaucauauccauUUACACa 2 8 1 20 [ce6:V:13550676-13550695:-] 0.6116 120 6 -4.09 -0.3945 MIMAT0014446 cel-miR-2953-5p 179836 C56A3.4 uaaAAGUGCUUGUGAAGACAu ||:|| |||:|||||| ccaUUUAC--ACAUUUCUGUa 2 19 10 28 [ce6:V:13550668-13550686:-] 0.6116 147 6 -17.22 -0.3175 MIMAT0000021 cel-miR-50 179836 C56A3.4 ggguucuuauggucuGUAUAGu |||||| -----------uuauCAUAUCc 2 8 1 11 [ce6:V:13550685-13550695:-] 0.7278 120 6 -5.02 -0.2420 MIMAT0000034 cel-miR-62 179836 C56A3.4 gacauucgaucuaauGUAUAGu |||||| -----------uuauCAUAUCc 2 8 1 11 [ce6:V:13550685-13550695:-] 0.7278 120 6 -5.02 -0.2420 MIMAT0000053 cel-miR-80 179836 C56A3.4 agccGAAAGUUGAUUACUAGAgu || |:|| || |||||| aauuCUGUUAAAUAUUGAUCUaa 3 20 136 158 [ce6:V:13550538-13550560:-] 0.4953 147 0 -9.79 -0.2523 MIMAT0000054 cel-miR-81 179836 C56A3.4 ugaucgAAAGUGCUACUAGAgu || |: |||||| auucugUUAAAUAUUGAUCUaa 3 17 137 158 [ce6:V:13550538-13550559:-] 0.4953 124 0 -8.68 -0.2568 MIMAT0000055 cel-miR-82 179836 C56A3.4 ugaccgAAAGUGCUACUAGAgu || |: |||||| auucugUUAAAUAUUGAUCUaa 3 17 137 158 [ce6:V:13550538-13550559:-] 0.4953 124 0 -8.91 -0.2568 MIMAT0000061 cel-miR-90 179836 C56A3.4 uccccguaaguuuguuGUAUAGu |||||| ------------uuauCAUAUCc 2 8 1 11 [ce6:V:13550685-13550695:-] 0.7278 120 6 -5.02 -0.2377 MIMAT0000285 cel-miR-230 179836 C56A3.4 agaggaccAGCGUGUUGAUUAUg || :|:|||||| uuagaaacUCUAUUAGCUAAUAa 2 16 162 184 [ce6:V:13550512-13550534:-] 0.4953 131 6 -10.27 -0.2861

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score C56A3.4 RAID00257745 cel-miR-50-5p miRNA MIMAT0000021 C56A3.4 mRNA 179836 Prediction 0.1828 C56A3.4 RAID01998286 cel-miR-62 miRNA MIMAT0000034 C56A3.4 mRNA 179836 Prediction 0.1828 C56A3.4 RAID02545540 cel-miR-230-3p miRNA MIMAT0000285 C56A3.4 mRNA 179836 CLIP-seq//Prediction 0.6308 C56A3.4 RAID02605654 cel-miR-90-3p miRNA MIMAT0000061 C56A3.4 mRNA 179836 Prediction 0.1828 C56A3.4 RAID03072652 cel-miR-80-3p miRNA MIMAT0000053 C56A3.4 mRNA 179836 CLIP-seq//Prediction 0.6308 C56A3.4 RAID03361688 cel-miR-81-3p miRNA MIMAT0000054 C56A3.4 mRNA 179836 CLIP-seq//Prediction 0.6308 C56A3.4 RAID03649380 cel-miR-82-3p miRNA MIMAT0000055 C56A3.4 mRNA 179836 CLIP-seq//Prediction 0.6308