DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0015091 cel-let-7* 183975 mfb-1 cauuccaucuuuuaacguAUCAAGu |||||| uuacaauuuuuucauuucUAGUUCc 2 8 386 410 [ce6:I:8779848-8779872:-] 0.5582 120 6 -4.85 -0.3413 MIMAT0015094 cel-miR-37* 183975 mfb-1 cguGGCGU-UGCCUGUGGGUGu ::|:| |: ||||||| uuuUUGUACAUUUCCACCCACa 2 19 428 449 [ce6:I:8779809-8779830:-] 0.5451 141 7 -17.73 -1.2378 MIMAT0015094 cel-miR-37* 183975 mfb-1 cguggcguugccuGUGGGUGu ||||||| ccauuuaucuaauCACCCACa 2 9 230 250 [ce6:I:8780008-8780028:-] 0.5713 140 7 -18.20 -1.2944 MIMAT0015095 cel-miR-42* 183975 mfb-1 gaaguggcuuuuucguuuGUGGGUg |||||| uugucccauuuaucuaauCACCCAc 2 8 225 249 [ce6:I:8780009-8780033:-] 0.5713 120 6 -16.63 -0.1652 MIMAT0015095 cel-miR-42* 183975 mfb-1 gaaguggcuuuuucguuuGUGGGUg |||||| uauuuuuuuguacauuucCACCCAc 2 8 424 448 [ce6:I:8779810-8779834:-] 0.5451 120 6 -15.03 -0.3291 MIMAT0015096 cel-miR-46* 183975 mfb-1 gacaguUAUCUGCCGAGAGaa | | || |||||| acauguAAAAACUGCUCUCaa 3 16 64 84 [ce6:I:8780174-8780194:-] 0.4449 131 0 -10.98 -0.1712 MIMAT0015097 cel-miR-47* 183975 mfb-1 ugACAGUUAUCUGACGAGAGaa ||| || | ||||||||| caUGU-AA-AAACUGCUCUCaa 3 21 65 84 [ce6:I:8780174-8780193:-] 0.4449 144 0 -16.30 -0.1712 MIMAT0015109 cel-miR-81* 183975 mfb-1 agagucuAGUGCCACUUUUGGc |:|| ||||||:| ccuuuuuUUAC--UGAAAAUCu 2 16 12 31 [ce6:I:8780227-8780246:-] 0.5964 132 0 -9.32 -0.1579 MIMAT0015114 cel-miR-238* 183975 mfb-1 cgaaacUUGCAGGCUCUUGUAGgu ||| ||: ||||||| acucaaAACAUCU--GAACAUCaa 3 19 304 325 [ce6:I:8779933-8779954:-] 0.5713 135 0 -13.61 -0.1327 MIMAT0015114 cel-miR-238* 183975 mfb-1 cgaaacUUGCAG-GCUCUUGUAGgu ||: || : | |||||| aaacaaAAUCUCUUAAAAACAUCga 3 19 324 348 [ce6:I:8779910-8779934:-] 0.5713 129 0 -8.47 -0.2594 MIMAT0000313 cel-miR-258 183975 mfb-1 uuuuccuaAGGAGAGUUUUGg || |||||||| cucaaccaUCAACUCAAAACa 2 14 293 313 [ce6:I:8779945-8779965:-] 0.5713 149 7 -12.44 -1.0887 MIMAT0000315 cel-miR-260 183975 mfb-1 gauguucucaagcUGUAGUg |||||| ucaaaacaucugaACAUCAa 2 8 306 325 [ce6:I:8779933-8779952:-] 0.5713 120 6 -8.15 -0.1687 MIMAT0000315 cel-miR-260 183975 mfb-1 gauguucucaagcUGUAGUg |||||| aauuauuacuacuACAUCAa 2 8 449 468 [ce6:I:8779790-8779809:-] 0.5451 120 6 -8.81 -0.1900 MIMAT0000322 cel-miR-266 183975 mfb-1 cgaaACGGUUUCAGAACGGa | ||||| |||||:| cuagUUCCAAAUUCUUGUCa 2 17 403 422 [ce6:I:8779836-8779855:-] 0.5451 148 0 -15.01 -0.1637 MIMAT0000324 cel-miR-268 183975 mfb-1 ugguuuGA-CGAAGAUUAAGAACGg || |:| | ||||||||: ucauuuCUAGUUCCAAAUUCUUGUc 2 19 397 421 [ce6:I:8779837-8779861:-] 0.5451 145 0 -16.60 -0.1895 MIMAT0000326 cel-miR-270 183975 mfb-1 gaggUGACGAUGUAGUACGg || | | ||||||| aaaaACAUCGAAAUCAUGCc 2 17 338 357 [ce6:I:8779901-8779920:-] 0.5713 148 7 -15.11 -1.0253 MIMAT0015239 cel-miR-786* 183975 mfb-1 caUUUAUGG--GGUUGACUAUAAGc || |||| ||::|||||||| ccAAUUACCAAACAGUUGAUAUUCa 2 22 169 193 [ce6:I:8780065-8780089:-] 0.4053 168 7 -19.30 -0.9837 MIMAT0015240 cel-miR-788* 183975 mfb-1 gcUAAGAUUAGGUAAAGg |||:| |:|||||| caAUUUU--UUCAUUUCu 2 17 389 404 [ce6:I:8779854-8779869:-] 0.5451 137 6 -8.96 -0.1506 MIMAT0005031 cel-miR-1018 183975 mfb-1 gacauucagGUUACUAGAGAGa ||| ||||||: aacaucaaaCAA-AAUCUCUUa 2 14 318 338 [ce6:I:8779920-8779940:-] 0.5713 127 0 -7.55 -0.2972 MIMAT0006587 cel-miR-1820 183975 mfb-1 cuuGUAGUAGCUUU--UUGUU-AGUUUu |||| || || | ||| ||||| cacCAUCUUCUCAACCAUCAACUCAAAa 2 23 284 311 [ce6:I:8779947-8779974:-] 0.5713 129 0 -9.45 -1.1242 MIMAT0015267 cel-miR-1829a* 183975 mfb-1 auguuuguuaaucuucAGGGGAa |||||| --------auuuuugaUCCCCUu 2 8 1 15 [ce6:I:8780243-8780257:-] 0.7479 120 6 -11.63 -0.1144 MIMAT0011425 cel-miR-2207 183975 mfb-1 gaauAUGUGUCAGAGUUAAGUGu ||::: | |: |||||| guguUAUGUUCUGUUCAUUCACc 2 20 265 287 [ce6:I:8779971-8779993:-] 0.5713 123 6 -10.81 -0.1018 MIMAT0011444 cel-miR-2214 183975 mfb-1 uugcggccaGUUCAACAACAGUUAc ||| || |||||| | uucuaguucCAAAUUCUUGUCAUUa 2 17 401 425 [ce6:I:8779833-8779857:-] 0.5451 132 0 -8.30 -0.1223 MIMAT0011446 cel-miR-2215 183975 mfb-1 uuuguugugcgcgauGCUAAGa |||||| uuuucagucaauuccCGAUUCu 2 8 361 382 [ce6:I:8779876-8779897:-] 0.5713 120 6 -10.39 -0.1216 MIMAT0011458 cel-miR-2218b* 183975 mfb-1 agAGUGAUGUUUGAUGUUUAAa |||:| | |::| |||||| uuUCAUUUCUAGUUCCAAAUUc 2 21 395 416 [ce6:I:8779842-8779863:-] 0.5451 140 6 -10.50 -0.1905 MIMAT0011458 cel-miR-2218b* 183975 mfb-1 agagugauguuuGAUGUUUAAa :|:|||||| aacuccauuuuuUUGCAAAUUa 2 11 142 163 [ce6:I:8780095-8780116:-] 0.4768 130 6 -10.98 -0.1540 MIMAT0011462 cel-miR-2220 183975 mfb-1 gacaUUCAG-GUGUUUGUUAAcu :| || : | |||||| ucccGAUUCUUUCUUACAAUUuu 3 19 373 395 [ce6:I:8779863-8779885:-] 0.5582 121 0 -5.00 -0.1250 MIMAT0000015 cel-miR-44 183975 mfb-1 ucgacuuacacAGAGAUCAGu |:||||||: caauuuuuucaUUUCUAGUUc 2 11 389 409 [ce6:I:8779849-8779869:-] 0.5451 130 0 -9.19 -0.1543 MIMAT0000016 cel-miR-45 183975 mfb-1 ucgacuuacacAGAGAUCAGu |:||||||: caauuuuuucaUUUCUAGUUc 2 11 389 409 [ce6:I:8779849-8779869:-] 0.5451 130 0 -9.19 -0.1543 MIMAT0000033 cel-miR-61 183975 mfb-1 cuacucauugccAAGAUCAGu |||||||: caauuuuuucauUUCUAGUUc 2 10 389 409 [ce6:I:8779849-8779869:-] 0.5451 129 0 -7.35 -0.1528 MIMAT0000035 cel-miR-63 183975 mfb-1 aaAGGUUGAG--CGAAGUCACAGUAu ||:|::|| ||| |||||| uuUCUAGUUCCAAAUUC-UUGUCAUu 2 23 400 424 [ce6:I:8779834-8779858:-] 0.5451 123 6 -16.81 -0.1499 MIMAT0000036 cel-miR-64 183975 mfb-1 aagccauugcgaagucACAGUAu |||||| ucuaguuccaaauucuUGUCAUu 2 8 402 424 [ce6:I:8779834-8779856:-] 0.5451 120 6 -8.22 -0.1630 MIMAT0000037 cel-miR-65 183975 mfb-1 aagccaaugcgaagucACAGUAu |||||| ucuaguuccaaauucuUGUCAUu 2 8 402 424 [ce6:I:8779834-8779856:-] 0.5451 120 6 -8.93 -0.1630 MIMAT0000038 cel-miR-66 183975 mfb-1 agugUAGGGAUUAGUCACAGUAc :|:|| |||: |||||| ucuaGUUCCAAAUUCUUGUCAUu 2 20 402 424 [ce6:I:8779834-8779856:-] 0.5451 135 6 -12.71 -0.1569 MIMAT0000043 cel-miR-71 183975 mfb-1 agUGAUGGGUACAGAAAGu | | |||: |||||| ucAAUUCCCGAUUCUUUCu 2 18 368 386 [ce6:I:8779872-8779890:-] 0.5713 125 6 -14.79 -0.1037 MIMAT0000044 cel-miR-72 183975 mfb-1 agucGAU-ACGGUUGUAGAACGGa ||| | |||| |||||:| auuuCUAGUUCCAAAUUCUUGUCa 2 20 399 422 [ce6:I:8779836-8779859:-] 0.5451 146 0 -15.54 -0.1637 MIMAT0000045 cel-miR-73 183975 mfb-1 ugacuUGACGGAUGUAGAACGGu | | || | |||||:| uuucuAGUUCCAAAUUCUUGUCa 2 19 400 422 [ce6:I:8779836-8779858:-] 0.5451 134 0 -14.20 -0.1653 MIMAT0000046 cel-miR-74 183975 mfb-1 acAUCUGACGGUAAAGAACGGu ||| :| | | ||||||:| ucUAG-UUCCAAAUUCUUGUCa 2 21 402 422 [ce6:I:8779836-8779856:-] 0.5451 142 0 -14.85 -0.1653 MIMAT0000058 cel-miR-85 183975 mfb-1 cgUGCUGAAAAGUUUAUGAAACAu |: | |||:| ||||||| aaAUUAGAUUUUA---ACUUUGUg 2 23 83 103 [ce6:I:8780155-8780175:-] 0.4449 146 7 -10.98 -0.7461 MIMAT0000284 cel-miR-229 183975 mfb-1 gcuaccuuuucuauuggucACAGUAa |||||| auuucuaguuccaaauucuUGUCAUu 2 8 399 424 [ce6:I:8779834-8779859:-] 0.5451 120 6 -8.34 -0.1599 MIMAT0000296 cel-miR-240 183975 mfb-1 ucgcuucuaaaccccCGGUCAu |||||| aaacaucgaaaucauGCCAGUu 2 8 340 361 [ce6:I:8779897-8779918:-] 0.5713 120 6 -11.68 -0.1245 MIMAT0000302 cel-miR-246 183975 mfb-1 cgaggaUGGG-CU--UUGUACAUu |||: || |||||||| aaagagACCUAGAUUAACAUGUAa 2 16 48 71 [ce6:I:8780187-8780210:-] 0.4449 149 7 -15.54 -1.2086 MIMAT0000303 cel-miR-247 183975 mfb-1 ucuucucuuauccGAGAUCAGu :||||||: acaauuuuuucauUUCUAGUUc 2 10 388 409 [ce6:I:8779849-8779870:-] 0.5582 125 0 -7.93 -0.1642 MIMAT0004216 cel-miR-255 183975 mfb-1 gacauuuuuUAGAGAAGUCAaa | :|:|||||| aaucaugccAGUUUUUCAGUca 3 14 349 370 [ce6:I:8779888-8779909:-] 0.5713 129 0 -9.12 -0.1742 MIMAT0000697 cel-miR-355 183975 mfb-1 guaucgaguccgauUUUGUUu |||||| aacaucugaacaucAAACAAa 2 8 310 330 [ce6:I:8779928-8779948:-] 0.5713 120 6 -6.21 -0.2634 MIMAT0004226 cel-miR-791 183975 mfb-1 acGGAAUAG-ACGCCUCACGGUUu ::|| || | : ||| |||| aaUUUUUUCAUUUCUAGUUCCAAa 2 22 390 413 [ce6:I:8779845-8779868:-] 0.5451 120 0 -8.20 -0.1081

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score mfb-1 RAID00126812 cel-miR-240-3p miRNA MIMAT0000296 mfb-1 mRNA 183975 Prediction 0.1828 mfb-1 RAID00186327 cel-miR-72-5p miRNA MIMAT0000044 mfb-1 mRNA 183975 Prediction 0.1828 mfb-1 RAID00313785 cel-miR-64-5p miRNA MIMAT0000036 mfb-1 mRNA 183975 Prediction 0.1828 mfb-1 RAID00616679 cel-miR-255-3p miRNA MIMAT0004216 mfb-1 mRNA 183975 Prediction 0.1828 mfb-1 RAID00659020 cel-miR-246-3p miRNA MIMAT0000302 mfb-1 mRNA 183975 Prediction 0.1828 mfb-1 RAID00753855 cel-miR-63-3p miRNA MIMAT0000035 mfb-1 mRNA 183975 Prediction 0.1828 mfb-1 RAID00938852 cel-miR-85-3p miRNA MIMAT0000058 mfb-1 mRNA 183975 Prediction 0.1828 mfb-1 RAID01044882 cel-miR-71-5p miRNA MIMAT0000043 mfb-1 mRNA 183975 Prediction 0.1828 mfb-1 RAID01250224 cel-miR-45-3p miRNA MIMAT0000016 mfb-1 mRNA 183975 Prediction 0.1828 mfb-1 RAID01448330 cel-miR-791-3p miRNA MIMAT0004226 mfb-1 mRNA 183975 Prediction 0.1828 mfb-1 RAID01512263 cel-miR-229-5p miRNA MIMAT0000284 mfb-1 mRNA 183975 Prediction 0.1828 mfb-1 RAID02107501 cel-miR-44-3p miRNA MIMAT0000015 mfb-1 mRNA 183975 Prediction 0.1828 mfb-1 RAID02142934 cel-miR-74-3p miRNA MIMAT0000046 mfb-1 mRNA 183975 Prediction 0.1828 mfb-1 RAID02469352 cel-miR-61-3p miRNA MIMAT0000033 mfb-1 mRNA 183975 Prediction 0.1828 mfb-1 RAID02678646 cel-miR-66-5p miRNA MIMAT0000038 mfb-1 mRNA 183975 Prediction 0.1828 mfb-1 RAID02991959 cel-miR-73-3p miRNA MIMAT0000045 mfb-1 mRNA 183975 Prediction 0.1828 mfb-1 RAID03537061 cel-miR-65-5p miRNA MIMAT0000037 mfb-1 mRNA 183975 Prediction 0.1828 mfb-1 RAID03773723 cel-miR-355-5p miRNA MIMAT0000697 mfb-1 mRNA 183975 Prediction 0.1828 mfb-1 RAID03857430 cel-miR-247-3p miRNA MIMAT0000303 mfb-1 mRNA 183975 Prediction 0.1828