DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0015096 cel-miR-46* 181319 F08G12.2 gacAGUUAUCUGCCGAGAGAa |: ||: || |||||| uacUUUAUGUCCGACUCUCUu 2 19 101 121 [ce6:X:11298059-11298079:-] 0.5485 126 6 -14.64 -0.1273 MIMAT0015097 cel-miR-47* 181319 F08G12.2 ugacaguuaucugacGAGAGAa |||||| uuacuuuauguccgaCUCUCUu 2 8 100 121 [ce6:X:11298059-11298080:-] 0.5485 120 6 -12.73 -0.1273 MIMAT0015107 cel-miR-71* 181319 F08G12.2 cgcuuuuugucuuaUCACUAu |||||| uuuauuuauuuuucAGUGAUc 2 8 120 140 [ce6:X:11298040-11298060:-] 0.5485 120 6 -5.43 -0.2830 MIMAT0015108 cel-miR-75* 181319 F08G12.2 aaAUUCGAACGUUGGCUGAc | | :|| :: |||||| acUUACUUUAUGUCCGACUc 2 19 98 117 [ce6:X:11298063-11298082:-] 0.5485 122 6 -11.54 -0.1698 MIMAT0015114 cel-miR-238* 181319 F08G12.2 cgaaacuugcAGGCUCUUGUAGGu |:| | ||||||| -------aaaUUC-AAAACAUCCa 2 15 1 16 [ce6:X:11298164-11298179:-] 0.5485 144 7 -11.38 -1.3287 MIMAT0000313 cel-miR-258 181319 F08G12.2 uuuuccuaaggaGAGUUUUGg :||||||| ---------aaaUUCAAAACa 2 10 1 12 [ce6:X:11298168-11298179:-] 0.5485 141 7 -8.47 -1.1959 MIMAT0000322 cel-miR-266 181319 F08G12.2 cgAAACGGUUU-C---AGAACGga ||| :|||| | |||||| guUUUAUCAAAUGAAUUCUUGCaa 3 19 143 166 [ce6:X:11298014-11298037:-] 0.5485 132 0 -12.93 -0.2886 MIMAT0000324 cel-miR-268 181319 F08G12.2 ugguuugacgaagaUUAAGAACGg ||||||||| uguuuuaucaaaugAAUUCUUGCa 2 11 142 165 [ce6:X:11298015-11298038:-] 0.5485 150 7 -15.69 -1.3183 MIMAT0000325 cel-miR-269 181319 F08G12.2 ucaaaacggucucAGAACGg |||||| uuaucaaaugaauUCUUGCa 2 8 146 165 [ce6:X:11298015-11298034:-] 0.5485 120 6 -7.35 -0.4693 MIMAT0000326 cel-miR-270 181319 F08G12.2 gaggugacgaugUAGUACGg ||||||: uauuuuucagugAUCAUGUu 2 9 126 145 [ce6:X:11298035-11298054:-] 0.5485 124 0 -12.32 -0.1191 MIMAT0000695 cel-miR-353 181319 F08G12.2 uuaugguuguguacCGUUAAc |||||| ucaaaugaauucuuGCAAUUc 2 8 149 169 [ce6:X:11298011-11298031:-] 0.5485 120 6 -5.45 -0.1279 MIMAT0006587 cel-miR-1820 181319 F08G12.2 cuuguaguagcuuuuuguUAGUUUu |||||| uuucagugaucauguuuuAUCAAAu 2 8 130 154 [ce6:X:11298026-11298050:-] 0.5485 120 6 -6.56 -0.1264 MIMAT0011432 cel-miR-2209a 181319 F08G12.2 acaucacauuggcgaCUAGAGa |||||| uuguuuuuuucacugGAUCUCc 2 8 56 77 [ce6:X:11298103-11298124:-] 0.5485 120 6 -11.45 -0.2540 MIMAT0011460 cel-miR-2219 181319 F08G12.2 gaagucgaaaGGGAGCGUGAAGc ::||:||| ||| aucaaaugaaUUCUUGCAAUUCa 2 14 148 170 [ce6:X:11298010-11298032:-] 0.5485 121 0 -12.75 -0.1200 MIMAT0014446 cel-miR-2953-5p 181319 F08G12.2 uaAAAGUGC-UUGUGAAGACAu |||: :| |: :|||||| ugUUUUUUGUCAUUUUUCUGUu 2 20 34 55 [ce6:X:11298125-11298146:-] 0.5485 134 6 -9.98 -0.2267 MIMAT0014447 cel-miR-2953-3p 181319 F08G12.2 cgaugucuucucgaUCACUAGu ||||||| uuuauuuauuuuucAGUGAUCa 2 9 120 141 [ce6:X:11298039-11298060:-] 0.5485 140 7 -11.95 -1.2462 MIMAT0000030 cel-miR-58 181319 F08G12.2 uaacggcaugacuugCUAGAGu |||||| uuguuuuuuucacugGAUCUCc 2 8 56 77 [ce6:X:11298103-11298124:-] 0.5485 120 6 -10.22 -0.2563 MIMAT0000035 cel-miR-63 181319 F08G12.2 aaAGGUUGAGCGAAGUCACAGUAu |: ||:|:|:||: |||||| ggUUAAAUUUGUUUU-UUGUCAUu 2 23 25 47 [ce6:X:11298133-11298155:-] 0.5485 136 6 -15.06 -0.2080 MIMAT0000035 cel-miR-63 181319 F08G12.2 aaAGGUUGA-GCGAAGUCAC-AGUAu |::| :| : :||||||| |||| ucUUUAUUUAUUUUUCAGUGAUCAUg 2 23 118 143 [ce6:X:11298037-11298062:-] 0.5485 129 0 -16.25 -1.1909 MIMAT0000036 cel-miR-64 181319 F08G12.2 aagccAUUGCGAAGUCAC-AGUAu | |: :||||||| |||| uuuauUUAUUUUUCAGUGAUCAUg 2 19 120 143 [ce6:X:11298037-11298060:-] 0.5485 130 0 -15.49 -1.1926 MIMAT0000036 cel-miR-64 181319 F08G12.2 aaGCCA--UUGCG-AAGUCACAGUAu |||| ||: : ||: |||||| gcCGGUUAAAUUUGUUUUUUGUCAUu 2 22 22 47 [ce6:X:11298133-11298158:-] 0.5485 123 6 -16.65 -0.2274 MIMAT0000037 cel-miR-65 181319 F08G12.2 aagccAAUGCGAAGUCAC-AGUAu |||: :||||||| |||| uuuauUUAUUUUUCAGUGAUCAUg 2 19 120 143 [ce6:X:11298037-11298060:-] 0.5485 138 0 -17.21 -1.1909 MIMAT0000037 cel-miR-65 181319 F08G12.2 aaGCCAAU----GCGAAGUCACAGUAu |||||| :|:||: |||||| gcCGGUUAAAUUUGUUUU-UUGUCAUu 2 22 22 47 [ce6:X:11298133-11298158:-] 0.5485 126 6 -18.46 -0.2099 MIMAT0000038 cel-miR-66 181319 F08G12.2 aguGUAGG-GAUUAGUCAC-AGUAc :||:: :| |||||| |||| cuuUAUUUAUUUUUCAGUGAUCAUg 2 21 119 143 [ce6:X:11298037-11298061:-] 0.5485 123 0 -17.30 -1.1926 MIMAT0000038 cel-miR-66 181319 F08G12.2 aguguagggauuagucACAGUAc |||||| gguuaaauuuguuuuuUGUCAUu 2 8 25 47 [ce6:X:11298133-11298155:-] 0.5485 120 6 -6.85 -0.2294 MIMAT0000044 cel-miR-72 181319 F08G12.2 agucGAUACGGUUGU---AGAACGga :||| | ||:: |||||| uguuUUAU-CAAAUGAAUUCUUGCaa 3 20 142 166 [ce6:X:11298014-11298038:-] 0.5485 124 0 -10.49 -0.2862 MIMAT0000045 cel-miR-73 181319 F08G12.2 ugACUUGACGGAUGUAGAACGgu | || || | |||||| uaUCAAAUG---AAUUCUUGCaa 3 22 147 166 [ce6:X:11298014-11298033:-] 0.5485 121 0 -10.01 -0.2862 MIMAT0000046 cel-miR-74 181319 F08G12.2 acaucugacggUAAAGAACGgu | ||||||| uuuaucaaaugAAUUCUUGCaa 3 12 145 166 [ce6:X:11298014-11298035:-] 0.5485 127 0 -8.85 -0.2862 MIMAT0000053 cel-miR-80 181319 F08G12.2 agccGAAAGUUGAUUACUAGAGu :|||: ||| |||||| uguuUUUUUCACU--GGAUCUCc 2 20 57 77 [ce6:X:11298103-11298123:-] 0.5485 124 6 -13.49 -0.2349 MIMAT0000054 cel-miR-81 181319 F08G12.2 ugaucGAAAGUGCUACUAGAGu :|||||| |||||| uguuuUUUUCAC-UGGAUCUCc 2 18 57 77 [ce6:X:11298103-11298123:-] 0.5485 127 6 -15.33 -0.2473 MIMAT0000055 cel-miR-82 181319 F08G12.2 ugaccGAAAGUGCUACUAGAGu :|||||| |||||| uguuuUUUUCAC-UGGAUCUCc 2 18 57 77 [ce6:X:11298103-11298123:-] 0.5485 127 6 -15.33 -0.2473 MIMAT0000059 cel-miR-86 181319 F08G12.2 cuGACACCGUUUCGUAAGUGAau |||| :: : |||||| uuCUGUUUUGUUUUUUUCACUgg 3 22 49 71 [ce6:X:11298109-11298131:-] 0.5485 125 0 -9.57 -0.1566 MIMAT0000284 cel-miR-229 181319 F08G12.2 gcuaccuuuucuauuggucACAGUAa |||||| gccgguuaaauuuguuuuuUGUCAUu 2 8 22 47 [ce6:X:11298133-11298158:-] 0.5485 120 6 -11.12 -0.2253 MIMAT0004216 cel-miR-255 181319 F08G12.2 gacauuuuuuaGAGAAGUCAaa :|:|||||| cucuuuauuuaUUUUUCAGUga 3 12 117 138 [ce6:X:11298042-11298063:-] 0.5485 127 0 -8.93 -0.2832 MIMAT0004220 cel-miR-785 181319 F08G12.2 agauguguuuuguuAAGUGAau |||||| ucuguuuuguuuuuUUCACUgg 3 9 50 71 [ce6:X:11298109-11298130:-] 0.5485 120 0 -7.51 -0.1597

DNA & RNA Element - miRNAMap Gene Name Mature miRNA Target Start Target End miRNA 3-5 Alignment Target 5-3 F08G12.2; CELE_F08G12.2 cel-miR-56* 9 27 AUGUUGGGUUUUACCUAGGCGGU- || |:||| ||:||||: AAC-AUCCAU-----AUUCGCCGG F08G12.2; CELE_F08G12.2 cel-miR-65 23 48 AAGCCAAU----GCGAAGUCACAGUAU |||||| :|:||: |||||| -CCGGUUAAAUUUGUUUUU-UGUCAUU F08G12.2; CELE_F08G12.2 cel-miR-81 61 78 UGAUCGAAAGUGCUACUAGAGU :|||||| |||||| ----UUUUUCACUG-GAUCUCC F08G12.2; CELE_F08G12.2 cel-miR-82 61 78 UGACCGAAAGUGCUACUAGAGU :|||||| |||||| ----UUUUUCACUG-GAUCUCC F08G12.2; CELE_F08G12.2 cel-miR-56* 1 25 augUUGGGUUU--UA--CCUAGGCGGu ||::|||| || ||:|||| --aAATTCAAAACATCCATATTCGCCg F08G12.2; CELE_F08G12.2 cel-miR-65 22 47 aaGCCAAU----GCGAAGUCACAGUAu |||||| :|:||: |||||| gcCGGTTAAATTTGTTTT-TTGTCATt F08G12.2; CELE_F08G12.2 cel-miR-81 57 77 ugaucgAAAGUG-CUACUAGAGu |||||| | |||||| tgttttTTTCACTG--GATCTCc F08G12.2; CELE_F08G12.2 cel-miR-82 57 77 ugaccgAAAGUG-CUACUAGAGu |||||| | |||||| tgttttTTTCACTG--GATCTCc

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score F08G12.2 RAID00378244 cel-miR-73-3p miRNA MIMAT0000045 F08G12.2 mRNA 181319 Prediction 0.1828 F08G12.2 RAID00704977 cel-miR-80-3p miRNA MIMAT0000053 F08G12.2 mRNA 181319 Prediction 0.1828 F08G12.2 RAID00800103 cel-miR-74-3p miRNA MIMAT0000046 F08G12.2 mRNA 181319 Prediction 0.1828 F08G12.2 RAID00850778 cel-miR-58a-3p miRNA MIMAT0000030 F08G12.2 mRNA 181319 Prediction 0.2202 F08G12.2 RAID01163400 cel-miR-81-3p miRNA MIMAT0000054 F08G12.2 mRNA 181319 Prediction 0.1828 F08G12.2 RAID01519290 cel-miR-255-3p miRNA MIMAT0004216 F08G12.2 mRNA 181319 Prediction 0.1828 F08G12.2 RAID01619928 cel-miR-82-3p miRNA MIMAT0000055 F08G12.2 mRNA 181319 Prediction 0.2202 F08G12.2 RAID02141195 cel-miR-64-5p miRNA MIMAT0000036 F08G12.2 mRNA 181319 Prediction 0.1828 F08G12.2 RAID02292968 cel-miR-785-3p miRNA MIMAT0004220 F08G12.2 mRNA 181319 Prediction 0.1828 F08G12.2 RAID02329439 cel-miR-86-5p miRNA MIMAT0000059 F08G12.2 mRNA 181319 Prediction 0.1828 F08G12.2 RAID02593336 cel-miR-65-5p miRNA MIMAT0000037 F08G12.2 mRNA 181319 Prediction 0.1828 F08G12.2 RAID02712216 cel-miR-229-5p miRNA MIMAT0000284 F08G12.2 mRNA 181319 Prediction 0.1828 F08G12.2 RAID02766806 cel-miR-63-3p miRNA MIMAT0000035 F08G12.2 mRNA 181319 Prediction 0.1828 F08G12.2 RAID02917920 cel-miR-72-5p miRNA MIMAT0000044 F08G12.2 mRNA 181319 Prediction 0.1828 F08G12.2 RAID03053695 cel-miR-66-5p miRNA MIMAT0000038 F08G12.2 mRNA 181319 Prediction 0.1828