DNA & RNA Element - miRTarBase Target Gene (Entrez ID) miRTarBase ID miRNA Species (miRNA) Target Gene Species (Target Gene) Experiments Support Type References (PMID) MIRT035216 cel-miR-51-5p Caenorhabditis elegans F16A11.1 172764 Caenorhabditis elegans Sequencing Functional MTI (Weak) 20062054 MIRT035194 cel-miR-52-5p Caenorhabditis elegans F16A11.1 172764 Caenorhabditis elegans Sequencing Functional MTI (Weak) 20062054 MIRT035172 cel-miR-53-5p Caenorhabditis elegans F16A11.1 172764 Caenorhabditis elegans Sequencing Functional MTI (Weak) 20062054 MIRT035148 cel-miR-55-3p Caenorhabditis elegans F16A11.1 172764 Caenorhabditis elegans Sequencing Functional MTI (Weak) 20062054 MIRT035120 cel-miR-56-3p Caenorhabditis elegans F16A11.1 172764 Caenorhabditis elegans Sequencing Functional MTI (Weak) 20062054 MIRT034949 cel-miR-63-3p Caenorhabditis elegans F16A11.1 172764 Caenorhabditis elegans Sequencing Functional MTI (Weak) 20062054 MIRT034922 cel-miR-64-5p Caenorhabditis elegans F16A11.1 172764 Caenorhabditis elegans Sequencing Functional MTI (Weak) 20062054 MIRT034894 cel-miR-65-5p Caenorhabditis elegans F16A11.1 172764 Caenorhabditis elegans Sequencing Functional MTI (Weak) 20062054 MIRT034869 cel-miR-66-5p Caenorhabditis elegans F16A11.1 172764 Caenorhabditis elegans Sequencing Functional MTI (Weak) 20062054 MIRT034811 cel-miR-70-3p Caenorhabditis elegans F16A11.1 172764 Caenorhabditis elegans Sequencing Functional MTI (Weak) 20062054 MIRT034333 cel-miR-124-3p Caenorhabditis elegans F16A11.1 172764 Caenorhabditis elegans Sequencing Functional MTI (Weak) 20062054 MIRT034289 cel-miR-229-5p Caenorhabditis elegans F16A11.1 172764 Caenorhabditis elegans Sequencing Functional MTI (Weak) 20062054 MIRT033922 cel-miR-249-3p Caenorhabditis elegans F16A11.1 172764 Caenorhabditis elegans Sequencing Functional MTI (Weak) 20062054 MIRT033857 cel-miR-252-5p Caenorhabditis elegans F16A11.1 172764 Caenorhabditis elegans Sequencing Functional MTI (Weak) 20062054 MIRT033492 cel-miR-355-5p Caenorhabditis elegans F16A11.1 172764 Caenorhabditis elegans Sequencing Functional MTI (Weak) 20062054 MIRT033409 cel-miR-357-3p Caenorhabditis elegans F16A11.1 172764 Caenorhabditis elegans Sequencing Functional MTI (Weak) 20062054 MIRT032625 cel-miR-1828 Caenorhabditis elegans F16A11.1 172764 Caenorhabditis elegans Sequencing Functional MTI (Weak) 20062054 MIRT032612 cel-miR-1829a-3p Caenorhabditis elegans F16A11.1 172764 Caenorhabditis elegans Sequencing Functional MTI (Weak) 20062054

DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0015094 cel-miR-37* 172764 F16A11.1 cguggcguugccuGUGGGUGu :|||||| auaucaacuauuuUACCCACu 2 9 307 327 [ce6:I:9394129-9394149:-] 0.5000 124 6 -15.18 -0.1432 MIMAT0015102 cel-miR-60* 172764 F16A11.1 uaaaAUACCGUGAGAAGGUCaa | || || |:|||||| uucaUUUGUCA-UUUUCCAGga 3 19 284 304 [ce6:I:9394152-9394172:-] 0.5000 136 0 -11.62 -0.1331 MIMAT0015109 cel-miR-81* 172764 F16A11.1 agAGUCUAGUGCCACUUUUGGc |:||||: :| ||||||: uuUUAGAUUCUGAAGAAAACUu 2 21 479 500 [ce6:I:9393956-9393977:-] 0.5000 148 0 -14.22 -0.2560 MIMAT0015112 cel-miR-229* 172764 F16A11.1 gauacUG-UGGGCUAUGGAAAGa || | |: |:|||||| aaaaaACAAACUUUUGCCUUUCa 2 18 265 287 [ce6:I:9394169-9394191:-] 0.5000 132 6 -11.73 -0.2663 MIMAT0000299 cel-miR-243 172764 F16A11.1 cuaUAGGGCGGCG-CUAGCAUGGc ||:|:|:| : ||||||| augAUUCUGUCUUAUUUCGUACCu 2 21 2 25 [ce6:I:9394431-9394454:-] 0.5019 151 7 -20.19 -1.0073 MIMAT0000315 cel-miR-260 172764 F16A11.1 gauguucucaaGCUGUAGUg :||||||| cuucucuuuaaUGACAUCAu 2 10 350 369 [ce6:I:9394087-9394106:-] 0.5000 141 7 -12.21 -0.9671 MIMAT0000324 cel-miR-268 172764 F16A11.1 ugguUUGAC-GAAGAUUAAGAACGg :::|| ||||| ||||||: ucuuGGUUGUCUUCUUCUUCUUGUa 2 21 427 451 [ce6:I:9394005-9394029:-] 0.5000 147 0 -18.62 -0.1062 MIMAT0000324 cel-miR-268 172764 F16A11.1 ugGUUUGACGAAGAUUAAGAACGg || ::||: | ||||||: caCACGUUGUACAUUUUUCUUGUc 2 23 384 407 [ce6:I:9394049-9394072:-] 0.5000 134 0 -14.36 -0.1014 MIMAT0006590 cel-miR-1823 172764 F16A11.1 aauGAG-GAUUUGU-GAAGGUCau :|| :| : || :|||||| ccuUUCAUUUGUCAUUUUCCAGga 3 20 281 304 [ce6:I:9394152-9394175:-] 0.5000 125 0 -11.20 -0.1370 MIMAT0006776 cel-miR-1834 172764 F16A11.1 aaCCUAGAG-UUACCAACU-AGAGa || |: | ::||| ||| |||| ccGGUUUACGGGUGGCUGAUUCUCg 2 22 238 262 [ce6:I:9394194-9394218:-] 0.5000 124 0 -15.39 -0.5985 MIMAT0011438 cel-miR-2211 172764 F16A11.1 aaAGAGGAGAUUUAAG-AUGGACu ||| ||| | ||| |||||| auUCU-GUCUUAUUUCGUACCUGu 2 22 5 27 [ce6:I:9394429-9394451:-] 0.5019 131 6 -17.18 -0.7817 MIMAT0011457 cel-miR-2218b 172764 F16A11.1 cuuuUACUACAUCAAAC-AUCAGa ||| | | |||| ||||| gguuAUGCUCUUUUUUGUUAGUCc 2 20 142 165 [ce6:I:9394291-9394314:-] 0.5043 127 0 -9.32 -0.6831 MIMAT0011458 cel-miR-2218b* 172764 F16A11.1 agAGUGAUGUUUGAUGUUUAAa |: || | : ||||||| cuUUUCUUCUUGAAACAAAUUc 2 21 407 428 [ce6:I:9394028-9394049:-] 0.5000 144 7 -6.47 -0.8811 MIMAT0011461 cel-miR-2220* 172764 F16A11.1 cuauuuaucaaauacCAGAAUg |||||| ------caugauucuGUCUUAu 2 8 1 16 [ce6:I:9394440-9394455:-] 0.5019 120 6 -6.17 -0.1224 MIMAT0011462 cel-miR-2220 172764 F16A11.1 gacauucagguGUUUGUUAAcu | ||||||| cggaauagagcCUAACAAUUaa 3 12 171 192 [ce6:I:9394264-9394285:-] 0.5000 127 0 -7.81 -0.1178 MIMAT0014446 cel-miR-2953-5p 172764 F16A11.1 uaaaagugcuugugAAGACAu |||||| ---------caugaUUCUGUc 2 8 1 12 [ce6:I:9394444-9394455:-] 0.5019 120 6 -8.97 -0.1008 MIMAT0000022 cel-miR-51 172764 F16A11.1 uuguaccuaucCUCGAUGCCCAu |: :||||||| uccaaacgcccGGUUUACGGGUg 2 13 229 251 [ce6:I:9394205-9394227:-] 0.5000 144 7 -17.97 -0.1389 MIMAT0000023 cel-miR-52 172764 F16A11.1 ucgugccUUUGU---AUACAUGCCCAc ||||: :| ||||||| uuuuuccAAACGCCCGGUUUACGGGUg 2 18 225 251 [ce6:I:9394205-9394231:-] 0.5000 144 7 -19.46 -0.1403 MIMAT0000024 cel-miR-53 172764 F16A11.1 ucgugccUUUGU---UUACAUGCCCAc ||||: ::| ||||||| uuuuuccAAACGCCCGGUUUACGGGUg 2 18 225 251 [ce6:I:9394205-9394231:-] 0.5000 148 7 -19.51 -0.1403 MIMAT0000025 cel-miR-54 172764 F16A11.1 gagccuaauacuUCUAAUGCCCAu :| |||||||| uuccaaacgcccGGUUUACGGGUg 2 13 228 251 [ce6:I:9394205-9394228:-] 0.5000 148 7 -17.95 -0.1416 MIMAT0000026 cel-miR-55 172764 F16A11.1 gagucgucuuugaAUAUGCCCAu | ||||||| uccaaacgcccggUUUACGGGUg 2 11 229 251 [ce6:I:9394205-9394227:-] 0.5000 142 7 -15.16 -0.1416 MIMAT0000028 cel-miR-56 172764 F16A11.1 gagucgccuuuguAAUGCCCAu |||||||| ccaaacgcccgguUUACGGGUg 2 10 230 251 [ce6:I:9394205-9394226:-] 0.5000 145 7 -19.86 -0.1403 MIMAT0000042 cel-miR-70 172764 F16A11.1 uaccuuugugguUGCUGCAUAAu |: :|||||| uucuucuuguauAUUGCGUAUUu 2 12 441 463 [ce6:I:9393993-9394015:-] 0.5000 127 6 -8.77 -0.1151 MIMAT0000053 cel-miR-80 172764 F16A11.1 agCCGAAAGUUGAUU-ACU-AGAGu ||:|| |:: |:: ||| |||| ccGGUUUACGGGUGGCUGAUUCUCg 2 22 238 262 [ce6:I:9394194-9394218:-] 0.5000 124 0 -21.99 -0.6022 MIMAT0000287 cel-miR-232 172764 F16A11.1 aguggcgucaauucuACGUAAAu ||||||| aauuccucaacauuuUGCAUUUa 2 9 195 217 [ce6:I:9394239-9394261:-] 0.5000 140 7 -10.80 -1.2635 MIMAT0000305 cel-miR-249 172764 F16A11.1 ccguugcGAGUUUUCAGGACACu :|:: ||||||||| gcucuuuUUUGUUAGUCCUGUGa 2 17 148 170 [ce6:I:9394286-9394308:-] 0.5043 152 7 -20.82 -0.5147 MIMAT0000697 cel-miR-355 172764 F16A11.1 guaucGAGUCCGAUUUUGUUu |||:| ||||||| ugauuCUCGGAAAAAAACAAa 2 17 254 274 [ce6:I:9394182-9394202:-] 0.5000 152 7 -13.41 -1.0797 MIMAT0000697 cel-miR-355 172764 F16A11.1 guaucGAGUCCGAUUUUGUUu :|| :|:|||||| gucuuUUCUUCUUGAAACAAa 2 17 405 425 [ce6:I:9394031-9394051:-] 0.5000 132 6 -9.74 -0.1380 MIMAT0000699 cel-miR-357 172764 F16A11.1 ugAGGACGUUGCUGACCGUAAAu |||| |||| :| |||||| auUCCU-CAACAUUUUGCAUUUa 2 22 196 217 [ce6:I:9394239-9394260:-] 0.5000 139 6 -19.51 -0.2262

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score F16A11.1 RAID00080343 cel-miR-65-5p miRNA MIMAT0000037 F16A11.1 mRNA 172764 NGS (Next Generation Sequencing) 0.5483 F16A11.1 RAID00170748 cel-miR-229-5p miRNA MIMAT0000284 F16A11.1 mRNA 172764 NGS (Next Generation Sequencing) 0.5483 F16A11.1 RAID00211507 cel-miR-124-3p miRNA MIMAT0000282 F16A11.1 mRNA 172764 NGS (Next Generation Sequencing) 0.5483 F16A11.1 RAID00223090 cel-miR-63-3p miRNA MIMAT0000035 F16A11.1 mRNA 172764 NGS (Next Generation Sequencing) 0.5483 F16A11.1 RAID00328099 cel-miR-357-3p miRNA MIMAT0000699 F16A11.1 mRNA 172764 NGS (Next Generation Sequencing)//CLIP-seq//Prediction 0.7226 F16A11.1 RAID00391275 cel-miR-1829a-3p miRNA MIMAT0006769 F16A11.1 mRNA 172764 NGS (Next Generation Sequencing) 0.5483 F16A11.1 RAID00535360 cel-miR-66-5p miRNA MIMAT0000038 F16A11.1 mRNA 172764 NGS (Next Generation Sequencing) 0.5483 F16A11.1 RAID00541484 cel-miR-70-3p miRNA MIMAT0000042 F16A11.1 mRNA 172764 NGS (Next Generation Sequencing)//CLIP-seq//Prediction 0.7226 F16A11.1 RAID00652525 cel-miR-51-5p miRNA MIMAT0000022 F16A11.1 mRNA 172764 NGS (Next Generation Sequencing)//CLIP-seq//Prediction 0.7226 F16A11.1 RAID01089005 cel-miR-52-5p miRNA MIMAT0000023 F16A11.1 mRNA 172764 NGS (Next Generation Sequencing)//CLIP-seq//Prediction 0.7226 F16A11.1 RAID01525287 cel-miR-53-5p miRNA MIMAT0000024 F16A11.1 mRNA 172764 NGS (Next Generation Sequencing)//CLIP-seq//Prediction 0.7226 F16A11.1 RAID01637397 cel-miR-268 miRNA MIMAT0000324 F16A11.1 mRNA 172764 CLIP-seq 0.5483 F16A11.1 RAID02050465 cel-miR-1828 miRNA MIMAT0006768 F16A11.1 mRNA 172764 NGS (Next Generation Sequencing) 0.5483 F16A11.1 RAID02258568 cel-miR-80-3p miRNA MIMAT0000053 F16A11.1 mRNA 172764 CLIP-seq//Prediction 0.6308 F16A11.1 RAID02469690 cel-miR-355-5p miRNA MIMAT0000697 F16A11.1 mRNA 172764 NGS (Next Generation Sequencing)//CLIP-seq//Prediction 0.7226 F16A11.1 RAID02923471 cel-miR-232-3p miRNA MIMAT0000287 F16A11.1 mRNA 172764 CLIP-seq//Prediction 0.6308 F16A11.1 RAID03074515 cel-miR-54-3p miRNA MIMAT0000025 F16A11.1 mRNA 172764 CLIP-seq//Prediction 0.6308 F16A11.1 RAID03428107 cel-miR-249-3p miRNA MIMAT0000305 F16A11.1 mRNA 172764 NGS (Next Generation Sequencing)//CLIP-seq//Prediction 0.7226 F16A11.1 RAID03510889 cel-miR-55-3p miRNA MIMAT0000026 F16A11.1 mRNA 172764 NGS (Next Generation Sequencing)//CLIP-seq//Prediction 0.7226 F16A11.1 RAID03693244 cel-miR-64-5p miRNA MIMAT0000036 F16A11.1 mRNA 172764 NGS (Next Generation Sequencing) 0.5483 F16A11.1 RAID03931269 cel-miR-267 miRNA MIMAT0000323 F16A11.1 mRNA 172764 CLIP-seq 0.5483 F16A11.1 RAID03972794 cel-miR-56-3p miRNA MIMAT0000028 F16A11.1 mRNA 172764 NGS (Next Generation Sequencing)//CLIP-seq//Prediction 0.7226 F16A11.1 RAID04039506 cel-miR-252-5p miRNA MIMAT0000308 F16A11.1 mRNA 172764 NGS (Next Generation Sequencing) 0.5483