DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0015091 cel-let-7* 172833 hrdl-1 cauuccaucUUUUAA-CGUAUCAAGu | | || ||||||||| ucuuucaucAUAUUUAGCAUAGUUCc 2 17 163 188 [ce6:I:9796380-9796405:+] 0.6552 155 7 -12.53 -0.7567 MIMAT0015091 cel-let-7* 172833 hrdl-1 cauuccaucuuuuaaCGUAUCAAGu |:||||||: uucaugccuguaugaGUAUAGUUUu 2 11 91 115 [ce6:I:9796308-9796332:+] 0.6552 130 0 -11.64 -0.1268 MIMAT0015096 cel-miR-46* 172833 hrdl-1 gacaguuaucugccGAGAGAa |||||| caacuaucaauuuuCUCUCUg 2 8 252 272 [ce6:I:9796469-9796489:+] 0.5763 120 6 -13.01 -0.1692 MIMAT0015097 cel-miR-47* 172833 hrdl-1 ugACAGUUAUCUGACGAGAGAa | ||||| :| |||||| acUAUCAAU---UUUCUCUCUg 2 21 254 272 [ce6:I:9796471-9796489:+] 0.5763 124 6 -14.21 -0.1692 MIMAT0015112 cel-miR-229* 172833 hrdl-1 gauacugugggcuauGGAAAGa |||||| uuccacccucuuuuuCCUUUCc 2 8 185 206 [ce6:I:9796402-9796423:+] 0.6552 120 6 -15.45 -0.2065 MIMAT0015119 cel-miR-247* 172833 hrdl-1 ccaUUAAUCUUUGAAAAGAGAu || || || |||||||| accAACUAUCAA-UUUUCUCUc 2 20 250 270 [ce6:I:9796467-9796487:+] 0.5763 157 7 -7.68 -1.0691 MIMAT0015119 cel-miR-247* 172833 hrdl-1 ccauuAAUCUUUGAAAAGAGAu | | | | ||||||| ----uUCAUACUCAUUUCUCUc 2 18 1 18 [ce6:I:9796218-9796235:+] 0.6552 145 7 -7.47 -0.9588 MIMAT0000315 cel-miR-260 172833 hrdl-1 gaUGUUCUCAAGCU-GUAGUg ::| |:|| :|| ||||| auGUAUGGGUAUGAUCAUCAu 2 19 225 245 [ce6:I:9796442-9796462:+] 0.6157 122 0 -15.14 -0.6312 MIMAT0000321 cel-miR-265 172833 hrdl-1 uaugGUGGG-AAGGAG-GGAGu :||:| ||:||| |||| uucaUACUCAUUUCUCUCCUCu 2 17 1 22 [ce6:I:9796218-9796239:+] 0.6552 123 0 -19.91 -1.2022 MIMAT0000326 cel-miR-270 172833 hrdl-1 gaGGUGACGAUGU-AGUACGg ::|:| ||| | |||||| caUUAUUUCUAAAUUCAUGCc 2 19 78 98 [ce6:I:9796295-9796315:+] 0.6552 126 6 -17.09 -1.2270 MIMAT0015240 cel-miR-788* 172833 hrdl-1 gcUAAGAU-UAGGUAAAgg |||:|: |||||||| auAUUUUGUAUCCAUUUga 3 17 123 141 [ce6:I:9796340-9796358:+] 0.6552 143 0 -10.34 -0.2459 MIMAT0005031 cel-miR-1018 172833 hrdl-1 gacaUUCA-GGUUACUAGAGAGa || | :|||| |||||| caccAACUAUCAAUUUUCUCUCu 2 19 249 271 [ce6:I:9796466-9796488:+] 0.5763 129 6 -15.61 -0.1072 MIMAT0005522 cel-miR-1021 172833 hrdl-1 ggcuCCUAAAGUGUAC--UAGAG-UGAa | :|||| : || ||||| ||| uuccGUGUUUCCUCUGAAAUCUCGACUa 2 22 316 343 [ce6:I:9796533-9796560:+] 0.5763 124 0 -15.42 -1.2001 MIMAT0006586 cel-miR-1819 172833 hrdl-1 agguagUUCGAGU---UAGUAAGGu || |||: |||||||: cucugaAAUCUCGACUAUCAUUCUa 2 17 327 351 [ce6:I:9796544-9796568:+] 0.5763 135 0 -14.31 -0.1372 MIMAT0011438 cel-miR-2211 172833 hrdl-1 aaAGAGGAGAUUUAAGAUGGACu | || |:| || ||||||| cuUGUCAUUUCAAAGCUACCUGg 2 22 44 66 [ce6:I:9796261-9796283:+] 0.6552 161 7 -17.12 -0.6375 MIMAT0011455 cel-miR-2218a 172833 hrdl-1 acuccgaauuuugaacAUCAAAc |||||| caugccuguaugaguaUAGUUUu 2 8 93 115 [ce6:I:9796310-9796332:+] 0.6552 120 6 -4.29 -0.1527 MIMAT0014446 cel-miR-2953-5p 172833 hrdl-1 uaAAAGUG-CUUGUGAAGACAu |||| | | :|||||| caUUUCUCUCCUCUUUUCUGUu 2 20 9 30 [ce6:I:9796226-9796247:+] 0.6552 130 6 -9.54 -0.4241 MIMAT0000049 cel-miR-77 172833 hrdl-1 accugucgauaccGGACUACUu ::|||||| uauuuuguauccaUUUGAUGAg 2 10 124 145 [ce6:I:9796341-9796362:+] 0.6552 125 6 -10.02 -0.1698 MIMAT0000300 cel-miR-244 172833 hrdl-1 guauGGUGAAACAUGUUGGUUUCu || | || | | ||||||| cgauCCCCAUUUUUC-ACCAAAGu 2 21 409 431 [ce6:I:9796626-9796648:+] 0.5763 154 7 -16.61 -1.0154 MIMAT0004216 cel-miR-255 172833 hrdl-1 gacauuuuuuAGAGAAGUCAAa |||:||| ||| auuucucuccUCUUUUCUGUUu 2 13 10 31 [ce6:I:9796227-9796248:+] 0.6552 124 0 -9.75 -0.1164 MIMAT0000314 cel-miR-259 172833 hrdl-1 acgAUGGUCUAAUCCUACUCUAAa ||:| ||| ||||||||| uugUAUC-CAUU-UGAUGAGAUUc 2 22 128 149 [ce6:I:9796345-9796366:+] 0.6552 157 7 -14.00 -1.0799 MIMAT0004227 cel-miR-792 172833 hrdl-1 agaCUUUCAACUUCUCUAAAGUu |:| ||| | |||||| uuaGGAUGUUCUUGUCAUUUCAa 2 21 34 56 [ce6:I:9796251-9796273:+] 0.6552 124 6 -8.92 -0.1147 MIMAT0004231 cel-miR-796 172833 hrdl-1 aaugaUUGGAGUUGAU-GUAAGGu ||:|||:|||| |||||: ucugaAAUCUCGACUAUCAUUCUa 2 19 328 351 [ce6:I:9796545-9796568:+] 0.5763 130 0 -23.74 -0.1319

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score hrdl-1 RAID01819445 cel-miR-259-5p miRNA MIMAT0000314 hrdl-1 mRNA 172833 Prediction 0.1828 hrdl-1 RAID02166731 cel-miR-796 miRNA MIMAT0004231 hrdl-1 mRNA 172833 CLIP-seq//Prediction 0.6308 hrdl-1 RAID02329583 cel-miR-792-3p miRNA MIMAT0004227 hrdl-1 mRNA 172833 Prediction 0.1828 hrdl-1 RAID02348215 cel-miR-255-3p miRNA MIMAT0004216 hrdl-1 mRNA 172833 Prediction 0.1828 hrdl-1 RAID02352068 cel-miR-47-3p miRNA MIMAT0000018 hrdl-1 mRNA 172833 Prediction 0.1828 hrdl-1 RAID03284267 cel-miR-244-5p miRNA MIMAT0000300 hrdl-1 mRNA 172833 Prediction 0.1828 hrdl-1 RAID03937144 cel-miR-77-3p miRNA MIMAT0000049 hrdl-1 mRNA 172833 Prediction 0.1828