DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0015102 cel-miR-60* 177779 F38E11.5 uaaaAUACCGUGAGAAGGUCaa || | :| :|||||| acacUAAGUUA--UUUCCAGcu 3 19 508 527 [ce6:IV:9463792-9463811:+] 0.5672 123 0 -12.76 -0.1053 MIMAT0000326 cel-miR-270 177779 F38E11.5 gaGGU-GACGAUGUAGUACGg ||| | |: |: |||||| uuCCAUCCGUAAUUUCAUGCa 2 19 116 136 [ce6:IV:9463400-9463420:+] 0.5672 125 6 -14.89 -0.1440 MIMAT0004235 cel-miR-800 177779 F38E11.5 gccgucuguuaaaggCUCAAAc |||||| aaaaugauguaaugaGAGUUUu 2 8 633 654 [ce6:IV:9463917-9463938:+] 0.5672 120 6 -6.53 -0.1974 MIMAT0006587 cel-miR-1820 177779 F38E11.5 cuuguaguagcuuuuuguUAGUUUu |||||| ugugauaauguuuuucuuAUCAAAu 2 8 289 313 [ce6:IV:9463573-9463597:+] 0.5672 120 6 -6.65 -0.1643 MIMAT0006590 cel-miR-1823 177779 F38E11.5 aaUGAGGAUUUGUGAAGGUCau || |: |: :|:|||||| aaACACUAAGUUAUUUCCAGcu 3 21 506 527 [ce6:IV:9463790-9463811:+] 0.5672 140 0 -16.26 -0.1011 MIMAT0006768 cel-miR-1828 177779 F38E11.5 ugaUAGUGAAUUUACGAAGGUCa | |||| |: | :|||||| guaAACACUAAGUUAUUUCCAGc 2 21 504 526 [ce6:IV:9463788-9463810:+] 0.5672 148 6 -16.12 -0.1290 MIMAT0011435 cel-miR-2210 177779 F38E11.5 ggAUUUUUAACUAACUAGACGGa |:: |:| ||| |||||||| -cUGGUAGUCGAUCGAUCUGCCc 2 22 1 22 [ce6:IV:9463285-9463306:+] 0.5672 169 7 -20.59 -0.7012 MIMAT0011435 cel-miR-2210 177779 F38E11.5 ggauuuuuaacuaacuAGACGGa |||||| uccccguuuucauauuUCUGCCu 2 8 426 448 [ce6:IV:9463710-9463732:+] 0.5672 120 6 -11.73 -0.1325 MIMAT0011439 cel-miR-2212 177779 F38E11.5 guuuCAGUCGGAUA-CUAGACGGu | :||:| || |||||||| --cuGGUAGUCGAUCGAUCUGCCc 2 20 1 22 [ce6:IV:9463285-9463306:+] 0.5672 162 7 -20.43 -0.7012 MIMAT0011439 cel-miR-2212 177779 F38E11.5 guuuCAGUCGGAUACUAGACGGu ||: | ||| |||||| ccccGUUUUCAUAU-UUCUGCCu 2 20 427 448 [ce6:IV:9463711-9463732:+] 0.5672 121 6 -10.73 -0.1252 MIMAT0011447 cel-miR-2216 177779 F38E11.5 cggauggcugAAUUUUACACg | ::|||||| auuaguauuaUGGGAAUGUGa 2 12 273 293 [ce6:IV:9463557-9463577:+] 0.5672 127 6 -8.83 -0.1888 MIMAT0000004 cel-miR-2 177779 F38E11.5 cgUGU-AGUUUCGACCGACACUAu :|| ||: :| :|||||| gcGCACUCGUCUUUUUUUGUGAUu 2 22 339 362 [ce6:IV:9463623-9463646:+] 0.5672 128 6 -15.97 -0.1361 MIMAT0000004 cel-miR-2 177779 F38E11.5 cguguaguuucgaccgACACUAu |||||| auuaguauuaugggaaUGUGAUa 2 8 273 295 [ce6:IV:9463557-9463579:+] 0.5672 120 6 -13.67 -0.1879 MIMAT0000014 cel-miR-43 177779 F38E11.5 cgcugucguucauuuGACACUAu :|||||| cgcacucgucuuuuuUUGUGAUu 2 9 340 362 [ce6:IV:9463624-9463646:+] 0.5672 124 6 -10.34 -0.1334 MIMAT0000014 cel-miR-43 177779 F38E11.5 cgcugucguucauuugACACUAu |||||| auuaguauuaugggaaUGUGAUa 2 8 273 295 [ce6:IV:9463557-9463579:+] 0.5672 120 6 -11.88 -0.1879 MIMAT0000282 cel-miR-124 177779 F38E11.5 acCGUAAGUG-GCGCACGGAAu |: ||||: : : |||||| ccGUUUUCAUAUUUCUGCCUUc 2 20 429 450 [ce6:IV:9463713-9463734:+] 0.5672 122 6 -10.67 -0.2363 MIMAT0000291 cel-miR-236 177779 F38E11.5 ucgcagUAAUGGACUGUCAUAAu |||::: :|||||| ugggaaAUUGUUAAUUAGUAUUa 2 18 260 282 [ce6:IV:9463544-9463566:+] 0.5672 133 6 -11.30 -0.1288 MIMAT0000306 cel-miR-250 177779 F38E11.5 acgguugucAACUGACACUAa || :|||||| cacucgucuUUUUUUGUGAUu 2 13 342 362 [ce6:IV:9463626-9463646:+] 0.5672 128 6 -9.71 -0.1334 MIMAT0000306 cel-miR-250 177779 F38E11.5 acgguugucaacugACACUAa |||||| uaguauuaugggaaUGUGAUa 2 8 275 295 [ce6:IV:9463559-9463579:+] 0.5672 120 6 -8.73 -0.1879 MIMAT0000768 cel-miR-392 177779 F38E11.5 aguAGUGUGCACUAGCUA-CUAu ||| | ||||||| ||| gauUCAGAGCAGAUCGAUCGAUa 2 20 153 175 [ce6:IV:9463437-9463459:+] 0.5672 127 0 -16.62 -1.0308 MIMAT0004232 cel-miR-797 177779 F38E11.5 agaaGAGUAACACUAACGACACUAu |||:| | || :|||||| cgcaCUCGUCUU--UUUUUGUGAUu 2 22 340 362 [ce6:IV:9463624-9463646:+] 0.5672 138 6 -14.46 -0.1308 MIMAT0004232 cel-miR-797 177779 F38E11.5 agAAGAGUAACACUAACGACACUAu || :||| ||: |||||| aaUUAGUAUUAUGG-GAAUGUGAUa 2 24 272 295 [ce6:IV:9463556-9463579:+] 0.5672 121 6 -14.30 -0.1827

DNA & RNA Element - miRNAMap Gene Name Mature miRNA Target Start Target End miRNA 3-5 Alignment Target 5-3 copb-2; F38E11.5 cel-miR-227 367 396 CAAGUC--UUAGU----ACAGCUUUCGA- ||| ::||| ||||| ||||| UUUCUACUGGUCACUCCUGUCGUAAGCUC copb-2; F38E11.5 cel-miR-229 27 58 GCUACCUUUUCUAU----UGGUCACAGUAA- ||| :||||| |:||||||:||| AGAUCAGAAAGACUGAGUAUCAGUGUUAUUU copb-2; F38E11.5 cel-miR-237 536 560 UCGACAAGCU-CUUAAGAGUCCCU- | ||||: | ||||| ||||: CGGUGUUUUUUGUAUUCU-AGGGGU copb-2; F38E11.5 cel-miR-253 585 603 GGAAGGGUGUUGCGGAUGAUU :||:|||| :|||||| UUUUUCCACU---UCUACUAU copb-2; F38E11.5 cel-miR-256 533 556 -AUGUCAGAAGAUACGUAAGGU- |:|:|| ||:| ||:||||:| GUGCGGUGUUUUUUGUAUUCUAG copb-2; F38E11.5 cel-miR-264 402 417 GUAUUGUUGUU-GGUGGGCGG |||| |||||| ----CCAACUAUCCACCCA-- copb-2; F38E11.5 cel-miR-265 409 429 UAUGGUGGG--AAGGAGGGAGU |||||| ||| |||||| --UCCACCCAAUUCAUCCCUCC copb-2; F38E11.5 cel-miR-270 588 609 GAGGUGACGAUG-UAGUACGG- |||||| |||| ||||| || UUCCACUUCUACUAUCAU-CCU copb-2; F38E11.5 cel-miR-271 214 239 UUACGAAA-------GGGUGGGCCGCU |:||| ||||:|:||:| --GGUUUUUUUCUAACCCAUCUGGUGU copb-2; F38E11.5 cel-miR-272 388 408 -GUUUGUGGGU-ACGGAUGU :||:| ||| |||| || GUAAGCUCCCUUUGCCAACU copb-2; F38E11.5 cel-miR-35 195 239 UGACGA--------------UCAAA---------GGUGGGCCACU ||:| :|||| |||:|:|||| -AUGUUUCACCCCAAAAAGAGGUUUUUUUCUAACCCAUCUGGUGU copb-2; F38E11.5 cel-miR-359 29 53 AAGCAGUCU--CU--UUC-UGGUCACU ||||| || :|| |:||||| ---AUCAGAAAGACUGAGUAUCAGUGU copb-2; F38E11.5 cel-miR-38 519 542 UGAGGUC-AAAAAGAGGGCCACU :||||| |||||: : ||||| UUUCCAGCUUUUUUGUGCGGUGU copb-2; F38E11.5 cel-miR-39 212 239 GUUCGACUAAAU-----GUGGGCCACU |:|:| ||| ||:|:|||| GAGGUUUUUUUCUAACCCAUCUGGUGU copb-2; F38E11.5 cel-miR-392 155 181 -AGUA--GUGUGCACUAGCUA-CUAU- ||| || |: ||||||| |||| UUCAGAGCAGAUC-GAUCGAUAGAUAA copb-2; F38E11.5 cel-miR-41 212 239 AUCCACUAAAAAG--UGGG----CCACU |||| |||||| |||| |||| GAGGUU-UUUUUCUAACCCAUCUGGUGU copb-2; F38E11.5 cel-miR-49 518 545 -AGACGUCGAAGA-GCA--CCACGAA- |:| ||||||:| :|| ||||:|| AUUUCCAGCUUUUUUGUGCGGUGUUUU copb-2; F38E11.5 cel-miR-54 258 288 GAGCCU---AAUACU---UC-UAAUGCCCAU |:||: ||:| || ||||:||| UUUGGGAAAUUGUUAAUUAGUAUUAUGGGA- copb-2; F38E11.5 cel-miR-59 141 159 GUAGUAGGACUAUUUGCUAAGCU |::||| :||:||||| ----UUUUUGACGAAUGAUUCA- copb-2; F38E11.5 cel-miR-63 518 544 -AAAGGUUGAGCGAA---GUCACAGUAU ||||||:||: | |:||||: AUUUCCAGCUUUUUUGUGCGGUGUUU-- copb-2; F38E11.5 cel-miR-64 42 57 AAGCCAUUGCGAAGUCACAGUAU |: |||||||:|| --------AGUAUCAGUGUUAUU copb-2; F38E11.5 cel-miR-65 42 57 AAGCCAAUGCGAAGUCACAGUAU |: |||||||:|| --------AGUAUCAGUGUUAUU copb-2; F38E11.5 cel-miR-795 2 25 UUCGAGCGACUAGUUAGAUGGAGU- :|: |: ||||:||||:|| || UGGUA-GUCGAUCGAUCUGCC-CAA copb-2; F38E11.5 cel-miR-227 375 394 CAAGUCUUAGUACAGCUUUCGA | || | || ||||| ||||| GGTC--ACTCCTGTCGTAAGCT copb-2; F38E11.5 cel-miR-253 584 602 GGAAGGGUGUUGCGGAUGAUu |:||::| | || :|||||| CTTTTTC-C-ACTTCTACTAt copb-2; F38E11.5 cel-miR-256 534 554 AUGUCAGAAGAUACGUAAGGU |:|:|| ||:| ||:||||:| TGCGGTGTTTTTTGTATTCTA copb-2; F38E11.5 cel-miR-264 398 418 guAUUGUUG-UUGGUGGGcgg |: |||| | |||||| ttTGCCAACTATCCACCCaat copb-2; F38E11.5 cel-miR-265 407 428 uauGGUGGG--AAGGAGGGAGu |||||| ||| |||||| tatCCACCCAATTCATCCCTCc copb-2; F38E11.5 cel-miR-271 219 238 uuACGAAAGGGUGGGCCGCu | || ||||:|:||:| ttTTCTAACCCATCTGGTGt copb-2; F38E11.5 cel-miR-272 389 407 gUUUGUGGG-UACGGAUGu ||:| ||| |||| || tAAGCTCCCTTTGCCAACt copb-2; F38E11.5 cel-miR-35 217 238 ugacgaucaaaGGUGGGCCACu |||:|:|||| ttttttctaacCCATCTGGTGt copb-2; F38E11.5 cel-miR-359 26 52 aagcAGUC--UCU--UUC-UGGUCACu |||| ||| :|| |:||||| aagaTCAGAAAGACTGAGTATCAGTGt copb-2; F38E11.5 cel-miR-392 156 179 AGUAGUGUGCA-CUAGCUA-CUAU ||| :|| | ||||||| |||| TCAGAGCAGATCGATCGATAGATA copb-2; F38E11.5 cel-miR-49 519 543 AGACGUCGAAGA---GCACCACGAA |:| ||||||:| :| ||||:|| TTTCCAGCTTTTTTGTGCGGTGTTT copb-2; F38E11.5 cel-miR-54 258 288 gAGCC---UAAUACU---UC-UAAUGCCCau |:|| |||:| | || ||||:||| tTTGGGAAATTGTTAATTAGTATTATGGGaa copb-2; F38E11.5 cel-miR-59 137 159 GUAGUAGGACUAUUUGCUAAGcu || : |::||| :||:||||| CAATTTTTTGACGAATGATTCag copb-2; F38E11.5 cel-miR-63 519 545 AAAGGUUGAGCGAA---GUCACAGUAu ||||||:||: :|| |:||||: | TTTCCAGCTTTTTTGTGCGGTGTTTTt copb-2; F38E11.5 cel-miR-64 29 56 aAGCCAUUGCGA-----AGUCACAGUAu || | || || |||||||:|| aTCAGAAAGACTGAGTATCAGTGTTATt copb-2; F38E11.5 cel-miR-65 34 56 aagccaAUGCGAAGUCACAGUAu |: |: |||||||:|| aaagacTGAGTATCAGTGTTATt copb-2; F38E11.5 cel-miR-795 1 24 uuCGAGCGACUAGUUAGAUGGagu | | |: ||||:||||:|| ctGGTAGTCGATCGATCTGCCcaa

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score copb-2 RAID00390018 cel-miR-124-3p miRNA MIMAT0000282 copb-2 mRNA 177779 Prediction 0.1828 copb-2 RAID00939659 cel-miR-797-5p miRNA MIMAT0004232 copb-2 mRNA 177779 Prediction 0.1828 copb-2 RAID01445337 cel-miR-2-3p miRNA MIMAT0000004 copb-2 mRNA 177779 Prediction 0.1828 copb-2 RAID01830721 cel-miR-43-3p miRNA MIMAT0000014 copb-2 mRNA 177779 Prediction 0.1828 copb-2 RAID02680882 cel-miR-392-3p miRNA MIMAT0000768 copb-2 mRNA 177779 Prediction 0.1828 copb-2 RAID03336180 cel-miR-236-3p miRNA MIMAT0000291 copb-2 mRNA 177779 Prediction 0.1828 copb-2 RAID03732063 cel-miR-250-3p miRNA MIMAT0000306 copb-2 mRNA 177779 Prediction 0.2202