DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0015096 cel-miR-46* 179875 swan-2 gacAGUUA-UCUGCCGAGAGAa ||| | | | ||||||| ucuUCAUUCAUCCCGCUCUCUc 2 19 4 25 [ce6:V:13801535-13801556:-] 0.5007 149 7 -12.10 -0.8476 MIMAT0015097 cel-miR-47* 179875 swan-2 ugacAGUUA-UCUGACGAGAGAa ||| | | | ||||||| uucuUCAUUCAUCCCGCUCUCUc 2 19 3 25 [ce6:V:13801535-13801557:-] 0.5007 149 7 -12.49 -0.8476 MIMAT0015109 cel-miR-81* 179875 swan-2 agagucuagugccacUUUUGGc |||||| aauuuuucucauuaaAAAACCa 2 8 241 262 [ce6:V:13801298-13801319:-] 0.5007 120 6 -7.63 -0.1648 MIMAT0015110 cel-miR-84* 179875 swan-2 cggcucAAUCAACUUUGUAACAc ||| | | |||||| uauucuUUAAUAUAUUCAUUGUu 2 18 450 472 [ce6:V:13801088-13801110:-] 0.5007 121 6 -4.88 -0.1627 MIMAT0015119 cel-miR-247* 179875 swan-2 ccaUUAAUCUUUGAAAAGAGau | ||: ||:||||||| uccAUUUGUCAAUUUUUCUCau 3 20 231 252 [ce6:V:13801308-13801329:-] 0.5007 143 0 -9.09 -0.1385 MIMAT0000317 cel-miR-262 179875 swan-2 uagucuuuuguaGCUCUUUg ||||||| uuuuucgcccugCGAGAAAa 2 9 93 112 [ce6:V:13801448-13801467:-] 0.5007 140 7 -10.17 -0.3725 MIMAT0000698 cel-miR-356 179875 swan-2 acuaAACAAGCGCAACGAGUu ||| || ||||||| aucaUUGCUCAAUUUGCUCAa 2 18 350 370 [ce6:V:13801190-13801210:-] 0.5007 153 7 -12.22 -1.2616 MIMAT0015239 cel-miR-786* 179875 swan-2 caUUUAUGGGGUUGACUAUA-AGc ||| ||:|| | ||||| || agAAAAACUCC--CCGAUAUCUCc 2 22 107 128 [ce6:V:13801432-13801453:-] 0.5007 126 0 -9.86 -0.7656 MIMAT0015239 cel-miR-786* 179875 swan-2 cauuuaugggguugacUAUAAGc |||||| caucuuauucuuuaauAUAUUCa 2 8 445 467 [ce6:V:13801093-13801115:-] 0.5007 120 6 -7.49 -0.3267 MIMAT0015240 cel-miR-788* 179875 swan-2 gcuaagaUUAGGUAAAgg ||||||||| caaaaaaAAUCCAUUUgu 3 12 222 239 [ce6:V:13801321-13801338:-] 0.5007 135 0 -9.93 -0.1080 MIMAT0015240 cel-miR-788* 179875 swan-2 gcuAAGAUUA---GGUAAAGg || |||| :|||||| uuuUUAUAAUUCAUCAUUUCa 2 16 559 579 [ce6:V:13800981-13801001:-] 0.5007 134 6 -8.54 -0.6477 MIMAT0005031 cel-miR-1018 179875 swan-2 gacaUUCAGGUU---ACUAGAGAGa || |:||: | ||||||| gaccAAAUUCAGUUUUUAUCUCUCu 2 19 61 85 [ce6:V:13801475-13801499:-] 0.5007 149 7 -14.91 -1.0998 MIMAT0005031 cel-miR-1018 179875 swan-2 gacaUUCAGGU-UACUAGAGAGa || | |: || ||||||| ugaaAACUGCGUAU-AUCUCUCa 2 19 188 209 [ce6:V:13801351-13801372:-] 0.5007 147 7 -11.29 -1.1439 MIMAT0005822 cel-miR-1019* 179875 swan-2 uuUUACUUUGAGCUU-GUUACGAGUg |: | |: | || || |||||| uuAGGGUCAUCCUAAUCAUUGCUCAa 2 24 336 361 [ce6:V:13801199-13801224:-] 0.5007 126 6 -13.89 -0.1215 MIMAT0005522 cel-miR-1021 179875 swan-2 ggcuccuaAAGUGUACUAGAGUGAa ||: |:| ||||||| gaagugccUUUUCGU-UUCUCACUg 2 18 166 189 [ce6:V:13801371-13801394:-] 0.5007 147 7 -14.15 -0.6713 MIMAT0005522 cel-miR-1021 179875 swan-2 ggcuccuAAAGUGUACUAGAGUGAa | ||| | |||||:| auccauuUGUCAAUUUUUCUCAUUa 2 19 230 254 [ce6:V:13801306-13801330:-] 0.5007 134 0 -11.04 -0.1101 MIMAT0006586 cel-miR-1819 179875 swan-2 agguAGU-UCGAGUUAGUAAGGu |:| | :|| ||||||:| auuuUUAUAAUUC-AUCAUUUCa 2 19 558 579 [ce6:V:13800981-13801002:-] 0.5007 135 0 -12.73 -0.2980 MIMAT0006590 cel-miR-1823 179875 swan-2 aaugagGAUUUGUGAAGG-UCAu :|| |:|:|||| ||| cauaaaUUAUAUAUUUCCUAGUc 2 17 487 509 [ce6:V:13801051-13801073:-] 0.5007 124 0 -11.99 -1.1995 MIMAT0006769 cel-miR-1829a 179875 swan-2 uuaUCUCUUUAAG--GUUACCAac | | ||| || |||||| cgcAAACAAACUCAAAAAUGGUaa 3 20 391 414 [ce6:V:13801146-13801169:-] 0.5007 130 0 -6.42 -0.2509 MIMAT0011425 cel-miR-2207 179875 swan-2 gaAUAUGUGUCAGAGUUAAGUGu ||| : || || :||||||: gaUAUCUCCAUUCAUAAUUCAUa 2 22 120 142 [ce6:V:13801418-13801440:-] 0.5007 149 0 -11.72 -0.1976 MIMAT0011425 cel-miR-2207 179875 swan-2 gaauAUGUGUCAGA--GUUAAGUGu | ||:| |:| :||||||: cacuUUCAUAUUUUUAUAAUUCAUc 2 20 549 573 [ce6:V:13800987-13801011:-] 0.5007 138 0 -10.83 -0.2560 MIMAT0011430 cel-miR-2208b-3p 179875 swan-2 acuucACAUGGUUU--UAGACGUa | | :|||| :|||||| guauaUCUCUCAAACUGUCUGCAa 2 18 198 221 [ce6:V:13801339-13801362:-] 0.5007 136 6 -10.55 -0.1258 MIMAT0011444 cel-miR-2214 179875 swan-2 uugcggccaguucaacAACAGUUAc |||||||| aacaaaaaaaauccauUUGUCAAUu 2 10 220 244 [ce6:V:13801316-13801340:-] 0.5007 145 7 -6.73 -1.1534 MIMAT0011454 cel-miR-2209b 179875 swan-2 acuucGUGUUGGCGAGUAGAGa :|:||:: ||||:|| auuuuUAUAAUUCAUCAUUUCa 2 18 558 579 [ce6:V:13800981-13801002:-] 0.5007 137 0 -10.59 -0.1371 MIMAT0011463 cel-miR-2221 179875 swan-2 ugaucgccagaccaUAGUGAAc ||||||| ugauacacgcgaaaAUCACUUu 2 9 533 554 [ce6:V:13801006-13801027:-] 0.5007 140 7 -8.20 -1.0859 MIMAT0000015 cel-miR-44 179875 swan-2 ucgacuuacacagaGAUCAGu |||||| aaauuauauauuucCUAGUCa 2 8 490 510 [ce6:V:13801050-13801070:-] 0.5007 120 6 -10.57 -0.3375 MIMAT0000016 cel-miR-45 179875 swan-2 ucgacuuacacagaGAUCAGu |||||| aaauuauauauuucCUAGUCa 2 8 490 510 [ce6:V:13801050-13801070:-] 0.5007 120 6 -10.57 -0.3375 MIMAT0000031 cel-miR-59 179875 swan-2 guAGUAGGACUAUUUGCUAAGCu | ||| | | : ||||||| ucUAAUCAUUUUUGUCGAUUCGu 2 22 35 57 [ce6:V:13801503-13801525:-] 0.5007 153 7 -17.92 -0.9183 MIMAT0000033 cel-miR-61 179875 swan-2 cuacucauugccaaGAUCAGu |||||| aaauuauauauuucCUAGUCa 2 8 490 510 [ce6:V:13801050-13801070:-] 0.5007 120 6 -9.70 -0.3375 MIMAT0000035 cel-miR-63 179875 swan-2 aaagguuGAGCGAAGUCACAGUAu ||: :|||| |||||| auuguuuCUUUUUUCAAUGUCAUa 2 18 467 490 [ce6:V:13801070-13801093:-] 0.5007 137 6 -16.56 -0.3260 MIMAT0000036 cel-miR-64 179875 swan-2 aagccauugcGAAGUCACAGUAu :|||| |||||| uuguuucuuuUUUCAAUGUCAUa 2 14 468 490 [ce6:V:13801070-13801092:-] 0.5007 129 6 -13.00 -0.3314 MIMAT0000037 cel-miR-65 179875 swan-2 aagcCAAUG--CGAAGUCACAGUAu ||| | :|||| |||||| cauuGUUUCUUUUUUCAAUGUCAUa 2 20 466 490 [ce6:V:13801070-13801094:-] 0.5007 130 6 -13.27 -0.3287 MIMAT0000038 cel-miR-66 179875 swan-2 aguguAGGGAUUAGUCACAGUAc ||::| ||| |||||| uuguuUCUUUUUUCAAUGUCAUa 2 19 468 490 [ce6:V:13801070-13801092:-] 0.5007 134 6 -13.08 -0.3287 MIMAT0000060 cel-miR-87 179875 swan-2 cguGUGGACUUUGAAACGAGUg ||:| || | ||||||| gguCAUCCUAAUCAUUGCUCAa 2 20 340 361 [ce6:V:13801199-13801220:-] 0.5007 159 7 -14.95 -1.1308 MIMAT0000060 cel-miR-87 179875 swan-2 cgugugGACUUUGAAACGAGUg || || |||||||| ucauugCUCAA--UUUGCUCAa 2 17 351 370 [ce6:V:13801190-13801209:-] 0.5007 149 7 -13.68 -1.2627 MIMAT0000282 cel-miR-124 179875 swan-2 accguaaGUGGC-GCACGGAAu ||||| ||||||| guaguacCACCGAAGUGCCUUu 2 15 155 176 [ce6:V:13801384-13801405:-] 0.5007 153 7 -21.58 -0.7703 MIMAT0000284 cel-miR-229 179875 swan-2 gcuaccuuuucuauuggucACAGUAa |||||| ucauuguuucuuuuuucaaUGUCAUa 2 8 465 490 [ce6:V:13801070-13801095:-] 0.5007 120 6 -7.82 -0.3341 MIMAT0000288 cel-miR-233 179875 swan-2 ggcGUGUACGCGU--AACGAGUu ||: ||| || ||||||| aauCAU-UGCUCAAUUUGCUCAa 2 19 349 370 [ce6:V:13801190-13801211:-] 0.5007 151 7 -16.09 -1.2648 MIMAT0000290 cel-miR-235 179875 swan-2 aguccggccccucucACGUUAu |||||| aauagguucuauguaUGCAAUa 2 8 419 440 [ce6:V:13801120-13801141:-] 0.5007 120 6 -13.36 -0.1230 MIMAT0000303 cel-miR-247 179875 swan-2 ucuucucuuauccgaGAUCAGu |||||| uaaauuauauauuucCUAGUCa 2 8 489 510 [ce6:V:13801050-13801071:-] 0.5007 120 6 -10.02 -0.3347 MIMAT0004216 cel-miR-255 179875 swan-2 gaCAUUUUUUAGAGAAGUCAAa |||: :| ||||||| ucGUAGUGACCAAAUUCAGUUu 2 21 54 75 [ce6:V:13801485-13801506:-] 0.5007 144 7 -11.38 -1.0172 MIMAT0000749 cel-lsy-6 179875 swan-2 gcuuUACGCAGAG--UAUGUUuu || | |:|| |||||| auucAU-CAUUUCAAAUACAAua 3 18 567 588 [ce6:V:13800972-13800993:-] 0.5007 126 0 -5.18 -0.2037 MIMAT0004225 cel-miR-790 179875 swan-2 gcgccacAAGCGCUCAC-GGUUc ||||: |||| |||| uugucgaUUCGU-AGUGACCAAa 2 16 46 67 [ce6:V:13801493-13801514:-] 0.5007 121 0 -15.67 -0.9822 MIMAT0004226 cel-miR-791 179875 swan-2 acGGAAUAG--ACGCCUCAC-GGUUu ::||:|| | || |||| |||| auUUUUGUCGAUUCGUAGUGACCAAa 2 22 42 67 [ce6:V:13801493-13801518:-] 0.5007 128 0 -18.58 -0.9883 MIMAT0004227 cel-miR-792 179875 swan-2 agacuuucaacuucucUAAAGUu |||||| auuuuuauaauucaucAUUUCAa 2 8 558 580 [ce6:V:13800980-13801002:-] 0.5007 120 6 -4.33 -0.6471

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score swan-2 RAID00021378 cel-miR-247-3p miRNA MIMAT0000303 swan-2 mRNA 179875 Prediction 0.2202 swan-2 RAID00219692 cel-miR-45-3p miRNA MIMAT0000016 swan-2 mRNA 179875 Prediction 0.2202 swan-2 RAID00309372 cel-miR-790-5p miRNA MIMAT0004225 swan-2 mRNA 179875 Prediction 0.1828 swan-2 RAID00586021 cel-miR-792-3p miRNA MIMAT0004227 swan-2 mRNA 179875 Prediction 0.1828 swan-2 RAID00602224 cel-miR-255-3p miRNA MIMAT0004216 swan-2 mRNA 179875 Prediction 0.1828 swan-2 RAID00692256 cel-miR-61-3p miRNA MIMAT0000033 swan-2 mRNA 179875 Prediction 0.2381 swan-2 RAID01069681 cel-miR-71-5p miRNA MIMAT0000043 swan-2 mRNA 179875 Prediction 0.1828 swan-2 RAID01085224 cel-miR-63-3p miRNA MIMAT0000035 swan-2 mRNA 179875 Prediction 0.1828 swan-2 RAID01223398 cel-miR-59-3p miRNA MIMAT0000031 swan-2 mRNA 179875 Prediction 0.1828 swan-2 RAID01602740 cel-miR-65-5p miRNA MIMAT0000037 swan-2 mRNA 179875 Prediction 0.1828 swan-2 RAID02051174 cel-miR-44-3p miRNA MIMAT0000015 swan-2 mRNA 179875 Prediction 0.2202 swan-2 RAID02392885 cel-miR-87-3p miRNA MIMAT0000060 swan-2 mRNA 179875 Prediction 0.2202 swan-2 RAID02428779 cel-miR-124-3p miRNA MIMAT0000282 swan-2 mRNA 179875 Prediction 0.2381 swan-2 RAID02444575 cel-miR-791-3p miRNA MIMAT0004226 swan-2 mRNA 179875 Prediction 0.1828 swan-2 RAID03146088 cel-miR-235-3p miRNA MIMAT0000290 swan-2 mRNA 179875 Prediction 0.1828 swan-2 RAID03201175 cel-miR-356a miRNA MIMAT0000698 swan-2 mRNA 179875 Prediction 0.1828 swan-2 RAID03229988 cel-lsy-6-3p miRNA MIMAT0000749 swan-2 mRNA 179875 Prediction 0.1828 swan-2 RAID03459079 cel-miR-64-5p miRNA MIMAT0000036 swan-2 mRNA 179875 Prediction 0.1828 swan-2 RAID03552222 cel-miR-233-3p miRNA MIMAT0000288 swan-2 mRNA 179875 Prediction 0.2202 swan-2 RAID03659514 cel-miR-245-3p miRNA MIMAT0000301 swan-2 mRNA 179875 Prediction 0.1828 swan-2 RAID03782290 cel-miR-229-5p miRNA MIMAT0000284 swan-2 mRNA 179875 Prediction 0.1828 swan-2 RAID03867323 cel-miR-66-5p miRNA MIMAT0000038 swan-2 mRNA 179875 Prediction 0.1828