DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0015119 cel-miR-247* 179876 swan-1 ccaUUAAUCUUUGAAAAGAGau | | | ||| |||||| agaACUAACAAAAAUUUCUCac 3 20 24 45 [ce6:V:13804692-13804713:-] 0.4677 135 0 -6.47 -0.1275 MIMAT0000313 cel-miR-258 179876 swan-1 uuUUCCUAAGGAGAGUUUUgg |||| | |:|||||| uuAAGG--UGGUUUCAAAAaa 3 20 329 347 [ce6:V:13804390-13804408:-] 0.3985 132 0 -9.66 -0.1665 MIMAT0015239 cel-miR-786* 179876 swan-1 cauUUAUGGGGUUG-ACUA-UAAGc || :| :||:: |||| |||| uccAAAGCAUCAGUAUGAUGAUUCa 2 21 175 199 [ce6:V:13804538-13804562:-] 0.4677 123 0 -10.09 -0.6751 MIMAT0015240 cel-miR-788* 179876 swan-1 gcUAAGAUUAGGUAAAGg :|| | |||||||| acGUUAUUUUCCAUUUCc 2 17 58 75 [ce6:V:13804662-13804679:-] 0.4677 152 7 -16.91 -1.1408 MIMAT0005032 cel-miR-1019 179876 swan-1 gaccuuucguuACACCUUAAUGUc | | |||||:| uguuuuuauguUUUUAAAUUAUAa 2 14 81 104 [ce6:V:13804633-13804656:-] 0.4677 125 0 -3.20 -0.1182 MIMAT0006772 cel-miR-1830 179876 swan-1 cggaucuuuugcACUUUGGAGc | ||||||| ucacgaucucuuUCAAACCUCa 2 11 197 218 [ce6:V:13804519-13804540:-] 0.4677 142 7 -7.93 -0.9496 MIMAT0011444 cel-miR-2214 179876 swan-1 uugcggccaGUUCAACAACAGUUAc :|| || |||||||| uuuaaauuaUAAUUUUUUGUCAAUu 2 17 93 117 [ce6:V:13804620-13804644:-] 0.4677 160 7 -7.75 -1.0720 MIMAT0011458 cel-miR-2218b* 179876 swan-1 agAGUGAUGUUUGAUGU-UUAAa |||| :| ||| ||| |||| ucUCAC-GCCAAC-ACACAAUUg 2 21 223 243 [ce6:V:13804494-13804514:-] 0.4049 124 0 -12.46 -0.7667 MIMAT0011462 cel-miR-2220 179876 swan-1 gacaUUCAGGUGUUUGUUAACu | | | ||| ||||||| ucucACGCCAACACACAAUUGu 2 19 223 244 [ce6:V:13804493-13804514:-] 0.4049 158 7 -13.78 -0.5307 MIMAT0000030 cel-miR-58 179876 swan-1 uaACGGCAUGACUUGCUAGAGu || :| |:| |||||||| uaUGAUG-AUU-CACGAUCUCu 2 21 188 207 [ce6:V:13804530-13804549:-] 0.4677 148 7 -14.53 -0.9302 MIMAT0000043 cel-miR-71 179876 swan-1 agUGAUGGGUACAGAAAGu |:| | || |||||| ugAUUCACGAUCUCUUUCa 2 18 193 211 [ce6:V:13804526-13804544:-] 0.4677 125 6 -11.73 -0.1031 MIMAT0000300 cel-miR-244 179876 swan-1 guauggugaaacauguuGGUUUCu |||||| acuuauuugaauuaauuCCAAAGc 2 8 159 182 [ce6:V:13804555-13804578:-] 0.4677 120 6 -9.46 -0.1001 MIMAT0000305 cel-miR-249 179876 swan-1 ccguUGCGAGUUUUCAGGACAcu |: :|| | |||||| cguuAUUUUC-CAUUUCCUGUua 3 20 59 80 [ce6:V:13804657-13804678:-] 0.4677 121 0 -8.53 -0.2181 MIMAT0000314 cel-miR-259 179876 swan-1 acgauggUC-UAAUCCUACU-CUAAa || || || |||| |||| auuccaaAGCAUCAGUAUGAUGAUUc 2 18 173 198 [ce6:V:13804539-13804564:-] 0.4677 124 0 -11.39 -0.6481 MIMAT0004227 cel-miR-792 179876 swan-1 agACUUUCAACUUCUCUAAAGUu || | ||| ||||||| uuUGUCAAUUGCUCUGAUUUCAa 2 22 108 130 [ce6:V:13804607-13804629:-] 0.4677 149 7 -10.96 -0.9803 MIMAT0004227 cel-miR-792 179876 swan-1 agacuuucaacuucucUAAAGUu |||||| ggugguuucaaaaaaaAUUUCAg 2 8 333 355 [ce6:V:13804382-13804404:-] 0.3985 120 6 -7.47 -0.1490

DNA & RNA Element - miRNAMap Gene Name Mature miRNA Target Start Target End miRNA 3-5 Alignment Target 5-3 swan-1; CELE_F53C11.8; F53C11.8 cel-miR-258 193 217 UUUUCCUAAGG---AGAGU---UUUGG- ||||| |||| ||||| ----UGAUUCACGAUCUCUUUCAAACCU swan-1; CELE_F53C11.8; F53C11.8 cel-miR-264 231 258 GUAUUGU-UGUU---------GGUGGGCGG |||| |||| ||||||| --CAACACACAAUUGUUUUAUCCACCCGA- swan-1; CELE_F53C11.8; F53C11.8 cel-miR-267 184 203 ACGUCGU-CUGUGAAGUGCCC |||:| ||: |||||| -UCAGUAUGAUGAUUCACGA- swan-1; CELE_F53C11.8; F53C11.8 cel-miR-271 241 258 UUACGAAA-GGGUGGGCCGCU ||:||| :||||||| -UUGUUUUAUCCACCCGA--- swan-1; CELE_F53C11.8; F53C11.8 cel-miR-35 239 258 -UGACGAUCAAAGGUGGGCCACU |:||:| |||||||| AAUUGUUUUA-UCCACCCGA--- swan-1; CELE_F53C11.8; F53C11.8 cel-miR-54 294 315 GAGCCUAAUACU--UCUAAUGCCCAU |||:||| ||:|||| || ----CAUUGUGAUAAGGUUACAGGA- swan-1; CELE_F53C11.8; F53C11.8 cel-miR-58 180 208 UAACGG---CAUG--ACU---UGCUAGAGU || |||: ||| |||||||| --AGCAUCAGUAUGAUGAUUCACGAUCUCU swan-1; CELE_F53C11.8; F53C11.8 cel-miR-67 115 157 AGAUGAGA--------------AAGAUCCUC---CAACACU :|:|||| |||| | ||||||| AUUGCUCUGAUUUCAAGUCACUUUCUCCGCCUUUGUUGUGAA swan-1; CELE_F53C11.8; F53C11.8 cel-miR-87 212 230 CGUGUGGACUUUGAAACGAGUG- |||| ||:||| ||||| ---AACCUC-AAUUUU-CUCACG swan-1; CELE_F53C11.8; F53C11.8 cel-miR-258 196 216 uuuUCCUAAGGAGAGUUUUGg | ||| :||:||||| | ttcACGATCTCTTTCAAACCt swan-1; CELE_F53C11.8; F53C11.8 cel-miR-264 229 258 guaUUGU-UGUU---------GGUGGGCgg |||| |||| ||||||| gccAACACACAATTGTTTTATCCACCCGaa swan-1; CELE_F53C11.8; F53C11.8 cel-miR-267 183 203 acGUCGU-CUGUGAAGUGCcc |||:| ||:: |||||| atCAGTATGATGATTCACGat swan-1; CELE_F53C11.8; F53C11.8 cel-miR-271 240 260 UUACGAAA-GGGUGGGCcgcu | ||:||| :||||||| ATTGTTTTATCCACCCGaaaa swan-1; CELE_F53C11.8; F53C11.8 cel-miR-35 240 260 UGACGAUCAAAGGUGGGCcacu |:||:| | |||||||| ATTGTT-TTATCCACCCGaaaa swan-1; CELE_F53C11.8; F53C11.8 cel-miR-54 290 315 gagccUAAUAC--UUCUAAUGCCCau |||:|| |||:|||| || tttccATTGTGATAAGGTTACAGGaa swan-1; CELE_F53C11.8; F53C11.8 cel-miR-58 181 207 uaacGGCAUG--ACU---UGCUAGAGu | |||: ||| |||||||| gcatCAGTATGATGATTCACGATCTCt swan-1; CELE_F53C11.8; F53C11.8 cel-miR-67 127 155 AGAU--GAGAAAGAUCC---UCCAACACU || | | |||||| | ||||||| TCAAGTCACTTTCTCCGCCTTTGTTGTGA swan-1; CELE_F53C11.8; F53C11.8 cel-miR-87 209 228 cGUGUGGACUUUGAAACGAGUG || |||| || ||| ||||| tCAAACCTCAA--TTTTCTCAC swan-1; CELE_F53C11.8; F53C11.8 cel-miR-58 200 207 UAA-------------CGG---CAUG--ACU---UGCUAGAGU || |||: ||| |||||||| UUGAAUUAAUUCCAAAGCAUCAGUAUGAUGAUUCACGAUCUCU

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score swan-1 RAID00381679 cel-miR-797-5p miRNA MIMAT0004232 swan-1 mRNA 179876 Prediction 0.2202 swan-1 RAID00891565 cel-miR-2-3p miRNA MIMAT0000004 swan-1 mRNA 179876 Prediction 0.1828 swan-1 RAID01140841 cel-miR-58a-3p miRNA MIMAT0000030 swan-1 mRNA 179876 Prediction 0.2381 swan-1 RAID01314616 cel-miR-43-3p miRNA MIMAT0000014 swan-1 mRNA 179876 Prediction 0.1828 swan-1 RAID01616406 cel-miR-259-5p miRNA MIMAT0000314 swan-1 mRNA 179876 Prediction 0.1828 swan-1 RAID01650014 cel-miR-82-3p miRNA MIMAT0000055 swan-1 mRNA 179876 Prediction 0.1828 swan-1 RAID01933165 cel-miR-249-3p miRNA MIMAT0000305 swan-1 mRNA 179876 Prediction 0.1828 swan-1 RAID02120050 cel-miR-792-3p miRNA MIMAT0004227 swan-1 mRNA 179876 Prediction 0.1828 swan-1 RAID02581837 cel-miR-71-5p miRNA MIMAT0000043 swan-1 mRNA 179876 Prediction 0.1828 swan-1 RAID03074727 cel-miR-244-5p miRNA MIMAT0000300 swan-1 mRNA 179876 Prediction 0.2202 swan-1 RAID03399223 cel-miR-67-3p miRNA MIMAT0000039 swan-1 mRNA 179876 Prediction 0.2202