DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000313 cel-miR-258 177797 amph-1 uuuucCUAAGGAGAGUUUUGg | ||: |: |||||| caacaGUUUUAUUACAAAACa 2 17 397 417 [ce6:IV:9644247-9644267:-] 0.4646 124 6 -8.35 -0.1651 MIMAT0000328 cel-miR-272 177797 amph-1 guUUGUGG-GU-ACGGAUGu ||| :: :| ||||||| auAACUUUAUAUUGCCUACu 2 17 151 170 [ce6:IV:9644494-9644513:-] 0.4646 142 7 -11.73 -1.0822 MIMAT0015239 cel-miR-786* 177797 amph-1 cauuUAUGGGGUUGACUAUAAGc :||| :||: |||||| ugcuGUACAAUAAUAUAUAUUCa 2 20 107 129 [ce6:IV:9644535-9644557:-] 0.4646 127 6 -9.56 -0.1347 MIMAT0015240 cel-miR-788* 177797 amph-1 gcuAAGAUUAGGUA-AAGg |||| |||||| ||| ccuUUCUCAUCCAUCUUCc 2 16 323 341 [ce6:IV:9644323-9644341:-] 0.4646 131 0 -15.00 -0.5129 MIMAT0005032 cel-miR-1019 177797 amph-1 gaccuuucguuacaccuUAAUGUc |||||| ucuuauucaacaguuuuAUUACAa 2 8 390 413 [ce6:IV:9644251-9644274:-] 0.4646 120 6 -5.92 -0.2419 MIMAT0011443 cel-miR-2214* 177797 amph-1 ggguaacugaggccUGGCUUa |||||| auuuuuauuuaaacACCGAAg 2 8 354 374 [ce6:IV:9644290-9644310:-] 0.4646 120 6 -9.97 -0.2200 MIMAT0000003 cel-miR-1 177797 amph-1 auGUAUGAA-GAAAUGUAAGgu | ||||| | | |||||| auCCUACUUACAUAACAUUCaa 3 20 61 82 [ce6:IV:9644582-9644603:-] 0.4646 142 0 -10.02 -0.1701 MIMAT0000058 cel-miR-85 177797 amph-1 cgugcugaaaaguuuaUGAAACAu ||||||| ---------------cACUUUGUu 2 9 1 9 [ce6:IV:9644655-9644663:-] 0.4646 140 7 -7.63 -0.3062 MIMAT0000282 cel-miR-124 177797 amph-1 accguaAGUGGCG--CACGGAAu || :||| ||||||| auugucUCCUCGCUUGUGCCUUu 2 16 305 327 [ce6:IV:9644337-9644359:-] 0.4646 150 7 -17.12 -0.6516 MIMAT0000287 cel-miR-232 177797 amph-1 aguggcGUCAAUUCUACGUAAAu |||| || ||||||| aguugaCAGU--AGUUGCAUUUu 2 18 267 287 [ce6:IV:9644377-9644397:-] 0.4646 154 7 -13.77 -0.5973 MIMAT0000307 cel-miR-251 177797 amph-1 uuauucucgccGUGGUGAUGAAUu :|:| ||||||| uucauuuuauuUAUC-CUACUUAc 2 14 49 71 [ce6:IV:9644593-9644615:-] 0.4646 143 7 -9.74 -0.8859 MIMAT0000308 cel-miR-252 177797 amph-1 aauggacgccgugAUGAUGAAUa | ||||||| uucauuuuauuuaUCCUACUUAc 2 11 49 71 [ce6:IV:9644593-9644615:-] 0.4646 142 7 -7.72 -0.9119 MIMAT0004215 cel-miR-253 177797 amph-1 ggaAGGGUGUUGCGGAUGAuu |:::|: |||||| ucaUUUUAUUUAUCCUACUua 3 19 50 70 [ce6:IV:9644594-9644614:-] 0.4646 122 0 -10.67 -0.2251 MIMAT0004216 cel-miR-255 177797 amph-1 gacaUUUUUUAGAGAAGUCAAa | || || | ||||||| uacaAUAAUAUAUAUUCAGUUg 2 19 112 133 [ce6:IV:9644531-9644552:-] 0.4646 158 7 -6.69 -1.1498 MIMAT0000697 cel-miR-355 177797 amph-1 guaUC-GAGUCCGAUUUUGUUu || :|:| ||||||| aacAGUUUUAUUACAAAACAAu 2 19 398 419 [ce6:IV:9644245-9644266:-] 0.4646 141 7 -8.24 -0.8001 MIMAT0000699 cel-miR-357 177797 amph-1 ugAGGACGUUGCUGACCGUAAAu | :| ||: ||||||| aaUAUUAGAAUUCAAGGCAUUUu 2 22 11 33 [ce6:IV:9644631-9644653:-] 0.4646 141 7 -9.10 -0.7834 MIMAT0000749 cel-lsy-6 177797 amph-1 gcuuuacgCAGAGU-AUGUUUu ||:|:| |||||| auucaacaGUUUUAUUACAAAa 2 14 394 415 [ce6:IV:9644249-9644270:-] 0.4646 121 6 -10.66 -1.1871 MIMAT0004219 cel-miR-784 177797 amph-1 agAUGCAUGCGUCUAACACGGu |:: | | | | ||||||| auUGUCUCCUC-GCUUGUGCCu 2 21 305 325 [ce6:IV:9644339-9644359:-] 0.4646 146 7 -14.64 -0.3140 MIMAT0004231 cel-miR-796 177797 amph-1 aauGAUUGGAGUUGAUGUAAGgu || ||:| |: |||||| aucCU-ACUUACAUAACAUUCaa 3 21 61 82 [ce6:IV:9644582-9644603:-] 0.4646 134 0 -10.93 -0.1767

DNA & RNA Element - miRNAMap Gene Name Mature miRNA Target Start Target End miRNA 3-5 Alignment Target 5-3 amph-1; CELE_F58G6.1; F58G6.1 cel-miR-124 313 328 ACCGUAAGUGGCGCACGGAAU ||:|: :||||||| -----CUCGCU-UGUGCCUUU amph-1; CELE_F58G6.1; F58G6.1 cel-miR-232 267 288 AGUGGC-GUCAAUUCUACGUAAAU : | |||| || ||||||| -AGUUGACAGU--AGUUGCAUUUU amph-1; CELE_F58G6.1; F58G6.1 cel-miR-233 311 333 -GGCGUGUACGCGUAACGAGUU || |:| ||:|| || |||| UCCUCGCUUGUGCCUUUCUCAU amph-1; CELE_F58G6.1; F58G6.1 cel-miR-236 243 279 UCGCAGUAAU-GG---------------ACUGUCAUAAU |||: || |||||||| -ACGUUUCCUUCCUUCAAUGAUAUAAGUUGACAGUAG-- amph-1; CELE_F58G6.1; F58G6.1 cel-miR-241 310 333 -AGUAAAGAGCGUGGAUGGAGU- || ||:|::||| :|||| CUCCUCGCUUGUGCCUUUCUCAU amph-1; CELE_F58G6.1; F58G6.1 cel-miR-243 306 326 CUAUAGGGCGGCGCUAGCAUGGC |:||:| :||| |:||:|| -UUGUCUCCUCGC--UUGUGCCU amph-1; CELE_F58G6.1; F58G6.1 cel-miR-253 145 172 GGAAGG-GUGUUG--------CGGAUGAUU ||| :|:||| ||||||| --AUCCUUAUAACUUUAUAUUGCCUACUC- amph-1; CELE_F58G6.1; F58G6.1 cel-miR-255 108 134 -GACAUUUU-UUAGAG--AAGUCAAA ||||| ||| ||||||| GCUGUACAAUAAUAUAUAUUCAGUUG amph-1; CELE_F58G6.1; F58G6.1 cel-miR-265 328 346 UAUGGUGGGAAGGAGGGAGU :||:|| ||:|||||| --CUCAUCCAUCUUCCCUCC amph-1; CELE_F58G6.1; F58G6.1 cel-miR-34 146 169 GUUGGUCGAUUGG--UGUGACGGA- || ||||: |:|:||||| --UCCUUAUAACUUUAUAUUGCCUA amph-1; CELE_F58G6.1; F58G6.1 cel-miR-48 313 333 -AGCGUAGAUGACUCGGAUGGAGU- |||| :|| |||| :|||| CUCGC-----UUGUGCCUUUCUCAU amph-1; CELE_F58G6.1; F58G6.1 cel-miR-70 363 380 UACCUUUGUGGUUGCUGCAUAAU |||||||:| ||||| ---UAAACACCGAA---GUAUUU amph-1; CELE_F58G6.1; F58G6.1 cel-miR-73 89 112 -UGACUUGACGGAUGUAGAACGGU ||||:|:| || | ||:||||: AACUGGAUU-CCAAGAUUUUGCUG amph-1; CELE_F58G6.1; F58G6.1 cel-miR-76 21 49 -AGUUCCG--AAGUAGU--UGUUGCUU- ||||||| ||::|: |::||||| UUCAAGGCAUUUUGUUUUUAUGACGAAU amph-1; CELE_F58G6.1; F58G6.1 cel-miR-784 308 326 -AGAUGCAUGCGUCUAACACGGU ||| | ||| ||||||| GUCUCCU--CGC---UUGUGCCU amph-1; CELE_F58G6.1; F58G6.1 cel-miR-785 403 428 -AGAU-GUGUUUUGUUAAGUGAAU- |:|| :||||||||||| :|||| UUUUAUUACAAAACAAUUAGCUUAA amph-1; CELE_F58G6.1; F58G6.1 cel-miR-786 6 33 -UAACUUGUAG---UAAGUCCCGUAAU :|||||:||: ||||| |||||| UGUUGAAUAUUAGAAUUCAAGGCAUUU amph-1; CELE_F58G6.1; F58G6.1 cel-miR-790 306 326 GCGCCACA----AGCGCUCACGGUUC ||| |||| ||||| ----UUGUCUCCUCGCUUGUGCCU-- amph-1; CELE_F58G6.1; F58G6.1 cel-miR-797 210 233 AGAAGAGUAACACUAACGACACUAU |||||| |:|||||| GCUUCUCCCAAACC--GUUGUGAUU amph-1; CELE_F58G6.1; F58G6.1 cel-miR-80 293 314 AGCCGAAAGUUGAUUACUAGAGU |||| |||| :|| :|||| --AGCUUCCAACAGAUUGUCUCC amph-1; CELE_F58G6.1; F58G6.1 cel-miR-124 307 327 ACCGUAAGUGGCG--CACGGAAu || | || :||| ||||||| TGTC--TCCTCGCTTGTGCCTTt amph-1; CELE_F58G6.1; F58G6.1 cel-miR-233 312 332 GGCGUGUACGCGUAACGAGUu || |:| ||:|| || |||| CCTCGCTTGTGCCTTTCTCAt amph-1; CELE_F58G6.1; F58G6.1 cel-miR-236 258 280 UCGCAGUAAUGGACUGUCAUAAu | :| :|| | :|||||||| | AATGATATAAGTTGACAGTAGTt amph-1; CELE_F58G6.1; F58G6.1 cel-miR-241 311 331 AGUAAAGAGCGUGGAUGGAGU || | ||:|::||| :|||| TCCTCGCTTGTGCCTTTCTCA amph-1; CELE_F58G6.1; F58G6.1 cel-miR-243 304 325 CUAUAGGGCGGCGCUAGCAUGGc ||| | :| || || |:||:|| GAT-TGTCTCCTCGCTTGTGCCt amph-1; CELE_F58G6.1; F58G6.1 cel-miR-253 147 172 GGAA-----GGGUGUUGCGGAUGAuu |||| :::|:| :||||||| CCTTATAACTTTATATTGCCTACTcc amph-1; CELE_F58G6.1; F58G6.1 cel-miR-265 326 345 uAUGGUGGGAAGGAGGGAGu | :||:|| ||:|||||| tTCTCATCCATCTTCCCTCc amph-1; CELE_F58G6.1; F58G6.1 cel-miR-34 144 167 gUUGGUCGAUUG--GUGUGACGGA | || |||| :|:|:||||| gATCCTTATAACTTTATATTGCCT amph-1; CELE_F58G6.1; F58G6.1 cel-miR-48 309 331 AGCGUAGAUGACUCGGAUGGAGU || | || :|| |||| :|||| TCTCCTCGCTTGTGCCTTTCTCA amph-1; CELE_F58G6.1; F58G6.1 cel-miR-70 360 379 UACCUUUGUGGUUGCUGCAUAAu || |||||| ||| ||||| ATTTAAACAC---CGAAGTATTt amph-1; CELE_F58G6.1; F58G6.1 cel-miR-73 90 111 UGACUUGACGGAUGUAGAACGgu ||||:|:| || | ||:|||| ACTGGATT-CCAAGATTTTGCtg amph-1; CELE_F58G6.1; F58G6.1 cel-miR-76 22 47 AGUUCCG--AAGU--AGUUGUUGCUU ||||||| ||:: |: |::||||| TCAAGGCATTTTGTTTTTATGACGAA amph-1; CELE_F58G6.1; F58G6.1 cel-miR-785 404 426 AGAU-GUGUUUUGUUAAGUGAAU |:|| :||||||||||| :|||| TTTATTACAAAACAATTAGCTTA amph-1; CELE_F58G6.1; F58G6.1 cel-miR-786 7 32 uAACUUGUAG---UAAGUCCCGUAAu |||||:||: ||||| |||||| gTTGAATATTAGAATTCAAGGCATTt amph-1; CELE_F58G6.1; F58G6.1 cel-miR-790 304 327 gcgcCACA--AGCGCUCACGGuuc || | |||| ||||| gattGTCTCCTCGCTTGTGCCttt amph-1; CELE_F58G6.1; F58G6.1 cel-miR-80 291 313 AGCCGAAAGUUGAUUACUAGAGu |: |||| |||| :|| :|||| TTAGCTTCCAACAGATTGTCTCc amph-1; CELE_F58G6.1; F58G6.1 cel-miR-124 320 327 ACCGUA-----------------------AGUGGCGCACGGAAU ||:|: :||||||| UUUACUUUAGCUUCCAACAGAUUGUCUCCUCGCU-UGUGCCUUU amph-1; CELE_F58G6.1; F58G6.1 cel-miR-232 280 287 AGU---------------------GGC-GUCAAUUCUACGUAAAU ::| |||| || ||||||| GUUUCCUUCCUUCAAUGAUAUAAGUUGACAGU--AGUUGCAUUUU amph-1; CELE_F58G6.1; F58G6.1 cel-miR-255 126 133 ------------------GACAUUUU-UUAGAG--AAGUCAAA ||||| ||| ||||||| CUGGAUUCCAAGAUUUUGCUGUACAAUAAUAUAUAUUCAGUUG amph-1; CELE_F58G6.1; F58G6.1 cel-miR-784 318 325 --------------------------AGAUGCAUGCGUCUAACACGGU ||| | ||| ||||||| AUUUUACUUUAGCUUCCAACAGAUUGUCU-CCU-CGC---UUGUGCCU

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score amph-1 RAID00295607 cel-miR-85-3p miRNA MIMAT0000058 amph-1 mRNA 177797 Prediction 0.1828 amph-1 RAID00763477 cel-lsy-6-3p miRNA MIMAT0000749 amph-1 mRNA 177797 Prediction 0.1828 amph-1 RAID01981373 cel-miR-796 miRNA MIMAT0004231 amph-1 mRNA 177797 Prediction 0.1828 amph-1 RAID02048111 cel-miR-355-5p miRNA MIMAT0000697 amph-1 mRNA 177797 Prediction 0.1828 amph-1 RAID02085288 cel-miR-251 miRNA MIMAT0000307 amph-1 mRNA 177797 Prediction 0.1828 amph-1 RAID02138381 cel-miR-255-3p miRNA MIMAT0004216 amph-1 mRNA 177797 Prediction 0.1828 amph-1 RAID02375108 cel-miR-357-3p miRNA MIMAT0000699 amph-1 mRNA 177797 Prediction 0.1828 amph-1 RAID02421728 cel-miR-784-5p miRNA MIMAT0004219 amph-1 mRNA 177797 Prediction 0.2202 amph-1 RAID02501796 cel-miR-253-3p miRNA MIMAT0004215 amph-1 mRNA 177797 Prediction 0.1828 amph-1 RAID02813117 cel-miR-1-3p miRNA MIMAT0000003 amph-1 mRNA 177797 Prediction 0.1828 amph-1 RAID02876715 cel-miR-232-3p miRNA MIMAT0000287 amph-1 mRNA 177797 Prediction 0.1828 amph-1 RAID03241216 cel-miR-250-3p miRNA MIMAT0000306 amph-1 mRNA 177797 Prediction 0.1828 amph-1 RAID03793304 cel-miR-252-5p miRNA MIMAT0000308 amph-1 mRNA 177797 Prediction 0.1828 amph-1 RAID04029219 cel-miR-124-3p miRNA MIMAT0000282 amph-1 mRNA 177797 Prediction 0.2381