DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0015096 cel-miR-46* 175556 dcn-1 gacaguuaUCUGCCGAGAGAa || ||||||| ugucucccAGUAUGCUCUCUg 2 14 256 276 [ce6:III:4317194-4317214:+] 0.5352 141 7 -15.21 -0.7753 MIMAT0015096 cel-miR-46* 175556 dcn-1 gacAGUU-AUCUGCCGAGAGAa |||| | |: |||||| ccaUCAACUCUAUUUCUCUCUc 2 19 118 139 [ce6:III:4317056-4317077:+] 0.5093 121 6 -10.07 -0.1177 MIMAT0015097 cel-miR-47* 175556 dcn-1 ugACAG-UUAUCUGACGAGAGAa |||| || |||||||| ucUGUCUCCCAGUAUGCUCUCUg 2 21 254 276 [ce6:III:4317192-4317214:+] 0.5352 151 7 -21.21 -0.7753 MIMAT0015097 cel-miR-47* 175556 dcn-1 ugacAGUU-AUCUGACGAGAGAa |||| | |:| |||||| uccaUCAACUCUAUUUCUCUCUc 2 19 117 139 [ce6:III:4317055-4317077:+] 0.5093 129 6 -10.89 -0.1177 MIMAT0015099 cel-miR-51* 175556 dcn-1 acguGGACAUGGACGA-AGGUAc :|| ||:|| || ||||| cauuUCUCUAUCU-CUCUCCAUc 2 19 364 385 [ce6:III:4317302-4317323:+] 0.5352 124 0 -12.59 -0.6169 MIMAT0015112 cel-miR-229* 175556 dcn-1 gauacugugggcuAUGGAAAGa |:|||||| uaaccauuuuuuuUGCCUUUCu 2 10 556 577 [ce6:III:4317494-4317515:+] 0.5352 129 6 -13.45 -0.2300 MIMAT0015115 cel-miR-239b* 175556 dcn-1 aaaaacGUGUGGUGUUUUCAcg |||| :: |||||| gaagauCACAAUG-AAAAGUag 3 17 402 422 [ce6:III:4317340-4317360:+] 0.5352 130 0 -8.99 -0.1130 MIMAT0015115 cel-miR-239b* 175556 dcn-1 aaaaacgUGUGGUGUUUUCAcg ::|: : |||||| ugauaaaGUAUGGAAAAAGUua 3 16 428 449 [ce6:III:4317366-4317387:+] 0.5352 123 0 -4.55 -0.1663 MIMAT0015116 cel-miR-240* 175556 dcn-1 guaaGAUCAGAGUUUUAGGAgc | | ||| |||||||| caaaCAAUUCU-AAAAUCCUaa 3 19 3 23 [ce6:III:4316452-4316472:+] 0.5761 140 0 -10.77 -0.1652 MIMAT0015119 cel-miR-247* 175556 dcn-1 ccauUAAUCUUUGA-AAAGAGAu || | | || ||||||| auccAUCA-ACUCUAUUUCUCUc 2 19 116 137 [ce6:III:4317054-4317075:+] 0.5093 143 7 -7.98 -0.8771 MIMAT0015119 cel-miR-247* 175556 dcn-1 ccauuaaucuuuGAAAAGAGAu | ||||||| ggguugcugccuCAUUUCUCUa 2 11 352 373 [ce6:III:4317290-4317311:+] 0.5352 142 7 -11.86 -0.8661 MIMAT0015119 cel-miR-247* 175556 dcn-1 ccauuaaucuuuGA-AAAGAGAu || ||||||| uuugcccaucguCUCUUUCUCUa 2 11 200 222 [ce6:III:4317138-4317160:+] 0.5352 141 7 -9.54 -0.8829 MIMAT0015119 cel-miR-247* 175556 dcn-1 ccauuaaucuuugAAAAGAGau ||||||| ccccccuccaucaUUUUCUCaa 3 10 510 531 [ce6:III:4317448-4317469:+] 0.5352 125 0 -5.69 -0.1137 MIMAT0015119 cel-miR-247* 175556 dcn-1 ccauuaAUCUUUGAAA-AGAGAu || |:::||| ||||| cucaccUAAAGGUUUUGUCUCUg 2 17 235 257 [ce6:III:4317173-4317195:+] 0.5352 124 0 -10.44 -0.6317 MIMAT0000320 cel-miR-264 175556 dcn-1 guaUUGUUGUU-GGUG-GGCGg ||:||||| :||| |||| caaAAUAACAAUUCACACCGCc 2 18 49 70 [ce6:III:4316987-4317008:+] 0.4993 132 0 -24.44 -0.6368 MIMAT0000321 cel-miR-265 175556 dcn-1 uaUGGUGGGAAGGAGGGAGu |::||:|| ||||||| auAUUACUCU--CUCCCUCu 2 19 318 335 [ce6:III:4317256-4317273:+] 0.5352 155 7 -23.52 -0.7584 MIMAT0015240 cel-miR-788* 175556 dcn-1 gcuaAGAUUAGGUAAAGg |:||| ||||||: uucaUUUAA-CCAUUUUu 2 15 550 566 [ce6:III:4317488-4317504:+] 0.5352 136 0 -9.18 -0.1218 MIMAT0015240 cel-miR-788* 175556 dcn-1 gcuaaGAUUAGGUAAAGg || |||||||: cucaaCUUUUCCAUUUUc 2 14 527 544 [ce6:III:4317465-4317482:+] 0.5352 133 0 -14.45 -0.1533 MIMAT0004229 cel-miR-794 175556 dcn-1 ucacuGUUGCUACUAAUG-GAGu |:|| || ||||| ||| cuuuuCGACCAU-AUUACUCUCu 2 18 308 329 [ce6:III:4317246-4317267:+] 0.5352 123 0 -11.01 -0.5041 MIMAT0015241 cel-miR-797* 175556 dcn-1 uaaagugUCUUUGGUUACUUUu ||| |||||||| aagaagaAGAUCACAAUGAAAa 2 16 397 418 [ce6:III:4317335-4317356:+] 0.5352 151 7 -14.47 -0.7357 MIMAT0005031 cel-miR-1018 175556 dcn-1 gacAUUCAGGUUACUAGAGAGa | | |:| | ||||||| gccUCAUUUCUCU-AUCUCUCu 2 20 360 380 [ce6:III:4317298-4317318:+] 0.5352 145 7 -11.49 -0.5582 MIMAT0005031 cel-miR-1018 175556 dcn-1 gacaUUCAGGUUACUAGAGAGa || ||:| | |||||| caucAACUCUAUUUCUCUCUCa 2 19 119 140 [ce6:III:4317057-4317078:+] 0.5093 130 6 -12.26 -0.2190 MIMAT0005822 cel-miR-1019* 175556 dcn-1 uuuuacuuugagcuuGUUACGAGUg | ||||||| aaauccuaaaguaucCCAUGCUCAa 2 11 15 39 [ce6:III:4316464-4316474,4316964-4316977:+] 0.5419 142 7 -9.78 -0.7564 MIMAT0005033 cel-miR-1020 175556 dcn-1 gaCUUUCACAGUGUCUUAUua |||| ||:| |||||| ugGAAAAAGUUA-AGAAUAuu 3 20 438 457 [ce6:III:4317376-4317395:+] 0.5352 141 0 -9.67 -0.1051 MIMAT0011425 cel-miR-2207 175556 dcn-1 gaAUAUGUGUCAGAGUUAAGUGu | | || | | |||||||| uaUCUUCAAAAUAACAAUUCACa 2 22 43 65 [ce6:III:4316981-4317003:+] 0.5152 157 7 -12.47 -0.7855 MIMAT0011462 cel-miR-2220 175556 dcn-1 gacauucaggUGUUUGUUAAcu |||||||||| ---------gACAAACAAUUcu 3 13 1 13 [ce6:III:4316450-4316462:+] 0.6522 140 0 -9.31 -0.2005 MIMAT0000032 cel-miR-60 175556 dcn-1 acUUGAU-CUUUUACACGUAUUau || || | | :| ||||||| gaAAGUAUGUACGUAUGCAUAAau 3 22 605 628 [ce6:III:4317543-4317566:+] 0.5352 140 0 -5.92 -0.1127 MIMAT0000039 cel-miR-67 175556 dcn-1 agAUGAGAAAGAUCCUCCAAC-ACu |||||||| | | ||||| || caUACUCUUU-GACG-GGUUGCUGc 2 23 339 361 [ce6:III:4317277-4317299:+] 0.5352 130 0 -16.60 -0.2634 MIMAT0000282 cel-miR-124 175556 dcn-1 accguaaguggcgcACGGAAu |||||| uuaaccauuuuuuuUGCCUUu 2 8 555 575 [ce6:III:4317493-4317513:+] 0.5352 120 6 -9.72 -0.1415 MIMAT0000291 cel-miR-236 175556 dcn-1 ucgcaguaauggacugUCAUAAu |||||| gaauauuuuucauuugAGUAUUu 2 8 451 473 [ce6:III:4317389-4317411:+] 0.5352 120 6 -7.94 -0.1430 MIMAT0000305 cel-miR-249 175556 dcn-1 ccguugcgaguuUUCAGGACAcu :| |||||| gaguauuuauguGAAUCCUGUaa 3 12 466 488 [ce6:III:4317404-4317426:+] 0.5352 123 0 -8.37 -0.1762

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score dcn-1 RAID00069811 cel-miR-56-3p miRNA MIMAT0000028 dcn-1 mRNA 175556 Prediction 0.1828 dcn-1 RAID01479204 cel-miR-67-3p miRNA MIMAT0000039 dcn-1 mRNA 175556 Prediction 0.1828 dcn-1 RAID01858750 cel-miR-236-3p miRNA MIMAT0000291 dcn-1 mRNA 175556 Prediction 0.1828 dcn-1 RAID02249262 cel-miR-249-3p miRNA MIMAT0000305 dcn-1 mRNA 175556 Prediction 0.1828 dcn-1 RAID03359002 cel-miR-60-3p miRNA MIMAT0000032 dcn-1 mRNA 175556 Prediction 0.1828 dcn-1 RAID03849988 cel-miR-124-3p miRNA MIMAT0000282 dcn-1 mRNA 175556 Prediction 0.1828