DNA & RNA Element - miRTarBase Target Gene (Entrez ID) miRTarBase ID miRNA Species (miRNA) Target Gene Species (Target Gene) Experiments Support Type References (PMID) MIRT034383 cel-miR-87-3p Caenorhabditis elegans sec-12 172641 Caenorhabditis elegans Sequencing Functional MTI (Weak) 20062054 MIRT034224 cel-miR-233-3p Caenorhabditis elegans sec-12 172641 Caenorhabditis elegans Sequencing Functional MTI (Weak) 20062054 MIRT033199 cel-miR-792-3p Caenorhabditis elegans sec-12 172641 Caenorhabditis elegans Sequencing Functional MTI (Weak) 20062054 MIRT032925 cel-miR-1019-5p Caenorhabditis elegans sec-12 172641 Caenorhabditis elegans Sequencing Functional MTI (Weak) 20062054

DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0015112 cel-miR-229* 172641 K02B12.3 gauacugugggcuauGGAAAGa |||||| uucauauuuauuucuCCUUUCa 2 8 83 104 [ce6:I:8509152-8509173:-] 0.5758 120 6 -7.86 -0.3246 MIMAT0015119 cel-miR-247* 172641 K02B12.3 ccAUUAAUCUUUGA--AAAGAGau | ||| | |:| |||||| uuUCAUUUCAUAUUUAUUUCUCcu 3 21 77 100 [ce6:I:8509156-8509179:-] 0.5758 131 0 -6.47 -0.2164 MIMAT0000311 cel-miR-256 172641 K02B12.3 augucagaagauacGUAAGGu |||||| --augauacaucaaCAUUCCu 2 8 1 19 [ce6:I:8509237-8509255:-] 0.5758 120 6 -9.84 -0.1862 MIMAT0000315 cel-miR-260 172641 K02B12.3 gauguucucaagcUGUAGUg |||||| --------augauACAUCAa 2 8 1 12 [ce6:I:8509244-8509255:-] 0.5758 120 6 -6.13 -0.1943 MIMAT0015240 cel-miR-788* 172641 K02B12.3 gcuaaGAUUAGGUAAAGg || |:|||||| uuccaCUUUUUCAUUUCa 2 14 69 86 [ce6:I:8509170-8509187:-] 0.5758 133 6 -11.44 -0.3848 MIMAT0006586 cel-miR-1819 172641 K02B12.3 agGUAGUUCGAGUUAGUAAGGu | || | ||: |||||:| uuCUUCCA-CUUUUUCAUUUCa 2 21 66 86 [ce6:I:8509170-8509190:-] 0.5758 134 0 -13.68 -0.1576 MIMAT0006586 cel-miR-1819 172641 K02B12.3 agguaguucgaguuaGUAAGGu |||||| ---augauacaucaaCAUUCCu 2 8 1 19 [ce6:I:8509237-8509255:-] 0.5758 120 6 -12.54 -0.1880 MIMAT0011461 cel-miR-2220* 172641 K02B12.3 cuauuuaucAAAUAC-CAGAAUg || ||| |||||| auuucuccuUUCAUGUGUCUUAa 2 14 92 114 [ce6:I:8509142-8509164:-] 0.5758 121 6 -8.64 -1.2311 MIMAT0000003 cel-miR-1 172641 K02B12.3 augUAUGAAGAAAUGUAAGGu |||| || ||||||| augAUACAUC--AACAUUCCu 2 19 1 19 [ce6:I:8509237-8509255:-] 0.5758 151 7 -12.01 -1.2629 MIMAT0000035 cel-miR-63 172641 K02B12.3 aaagguuGAGCGAAGU-CACAGUAu ||| :|||| ||||| | uuuauuuCUCCUUUCAUGUGUCUUa 2 18 89 113 [ce6:I:8509143-8509167:-] 0.5758 132 0 -15.91 -0.1642 MIMAT0000036 cel-miR-64 172641 K02B12.3 aagccauuGCGAAGU-CACAGUAu | :|||| ||||| | uuauuucuCCUUUCAUGUGUCUUa 2 16 90 113 [ce6:I:8509143-8509166:-] 0.5758 122 0 -11.01 -0.1690 MIMAT0000037 cel-miR-65 172641 K02B12.3 aagccaauGCGAAGU-CACAGUAu | :|||| ||||| | uuauuucuCCUUUCAUGUGUCUUa 2 16 90 113 [ce6:I:8509143-8509166:-] 0.5758 122 0 -11.01 -0.1674 MIMAT0000038 cel-miR-66 172641 K02B12.3 agUGUAGGGAUUAGU-CACAGUAc |: ||:| ||| ||||| | uuAUUUCUCCUUUCAUGUGUCUUa 2 22 90 113 [ce6:I:8509143-8509166:-] 0.5758 124 0 -14.68 -0.1642 MIMAT0000282 cel-miR-124 172641 K02B12.3 accGUAAGUGGCGCACGGAAu | |||| :|||:||| cucCUUUCA---UGUGUCUUa 2 19 96 113 [ce6:I:8509143-8509160:-] 0.5758 130 0 -12.92 -0.1229 MIMAT0004227 cel-miR-792 172641 K02B12.3 agacuuucaacuucucUAAAGUu |||||| cuucuuccacuuuuucAUUUCAu 2 8 65 87 [ce6:I:8509169-8509191:-] 0.5758 120 6 -2.74 -0.2509 MIMAT0004231 cel-miR-796 172641 K02B12.3 aaugauuggaGUUGAUGUAAGGu || | ||||||| ----augauaCAUCAACAUUCCu 2 14 1 19 [ce6:I:8509237-8509255:-] 0.5758 149 7 -11.30 -1.2629

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score sec-12 RAID00220707 cel-miR-64-5p miRNA MIMAT0000036 sec-12 mRNA 172641 CLIP-seq//Prediction 0.6308 sec-12 RAID00309969 cel-miR-233-3p miRNA MIMAT0000288 sec-12 mRNA 172641 NGS (Next Generation Sequencing) 0.5483 sec-12 RAID00635421 cel-miR-66-5p miRNA MIMAT0000038 sec-12 mRNA 172641 CLIP-seq//Prediction 0.6308 sec-12 RAID01230049 cel-miR-796 miRNA MIMAT0004231 sec-12 mRNA 172641 CLIP-seq//Prediction 0.6308 sec-12 RAID01415369 cel-miR-792-3p miRNA MIMAT0004227 sec-12 mRNA 172641 NGS (Next Generation Sequencing)//Prediction 0.6308 sec-12 RAID01910575 cel-miR-63-3p miRNA MIMAT0000035 sec-12 mRNA 172641 CLIP-seq//Prediction 0.6308 sec-12 RAID01984999 cel-miR-1019-5p miRNA MIMAT0005822 sec-12 mRNA 172641 NGS (Next Generation Sequencing) 0.5483 sec-12 RAID02054092 cel-miR-1-3p miRNA MIMAT0000003 sec-12 mRNA 172641 CLIP-seq//Prediction 0.6308 sec-12 RAID02422946 cel-miR-65-5p miRNA MIMAT0000037 sec-12 mRNA 172641 CLIP-seq//Prediction 0.6308 sec-12 RAID03217532 cel-miR-87-3p miRNA MIMAT0000060 sec-12 mRNA 172641 NGS (Next Generation Sequencing) 0.5483 sec-12 RAID03252982 cel-miR-124-3p miRNA MIMAT0000282 sec-12 mRNA 172641 CLIP-seq//Prediction 0.6308