DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0015094 cel-miR-37* 176462 helicase cguGGC-GUUGCCUGUGGGUgu ||| : |: |||||| uucCCGUUCAUUUUCACCCAaa 3 19 9 30 [ce6:III:10428682-10428703:-] 0.5400 121 0 -16.95 -0.4777 MIMAT0015095 cel-miR-42* 176462 helicase gaaguggcuuuuucguuuGUGGGUg |||||| uuuuuucccguucauuuuCACCCAa 2 8 5 29 [ce6:III:10428683-10428707:-] 0.5400 120 6 -18.59 -0.1265 MIMAT0015099 cel-miR-51* 176462 helicase acGUGGACAUGGACGAAGGUAc :|: | ||::| | ||||| uaUAUAUUUAUUUUCAUCCAUa 2 21 255 276 [ce6:III:10428436-10428457:-] 0.4523 128 0 -7.29 -0.1337 MIMAT0015102 cel-miR-60* 176462 helicase uaaaaUACCGUGAGA-AGGUCAa || |: :||| |||||| aaacaAUUGUUUUCUGUCCAGUa 2 18 347 369 [ce6:III:10428343-10428365:-] 0.4523 125 6 -11.90 -1.1096 MIMAT0015107 cel-miR-71* 176462 helicase cgcuuuuugucUUAUCACUAu | ||||||| aaauuucaauuACUAGUGAUc 2 11 159 179 [ce6:III:10428533-10428553:-] 0.4523 142 7 -6.14 -0.4927 MIMAT0015110 cel-miR-84* 176462 helicase cggcucAAUCAAC--UUUG-UAACAc || ||| |||| ||||| aaaauaUUCUUUGUAAAACAAUUGUu 2 18 332 357 [ce6:III:10428355-10428380:-] 0.4523 120 0 -4.56 -0.9951 MIMAT0015116 cel-miR-240* 176462 helicase guaagaucagAGUUUUAGGAGc ||||||||||| ccaaaaauggUCAAAAUCCUCa 2 13 26 47 [ce6:III:10428665-10428686:-] 0.4774 160 7 -15.78 -1.0585 MIMAT0000313 cel-miR-258 176462 helicase uuuuccuaAGGAGAGUUUUGg |::|:||||||: auuguuucUUUUUUCAAAAUu 2 14 226 246 [ce6:III:10428466-10428486:-] 0.4523 137 0 -9.68 -0.1112 MIMAT0000313 cel-miR-258 176462 helicase uuuuccuAAGGAGAGUUUUgg | | |:|||||| uaauuccUACAUUUCAAAAaa 3 15 291 311 [ce6:III:10428401-10428421:-] 0.4523 130 0 -11.09 -0.1730 MIMAT0000313 cel-miR-258 176462 helicase uuuuccUAAGG-AGA-GUUUUGg || || ||| |||||| uccaucAUCCCAUCUGCAAAACa 2 16 184 206 [ce6:III:10428506-10428528:-] 0.4523 122 6 -11.02 -0.9422 MIMAT0000323 cel-miR-267 176462 helicase acgucGUCUGUGAAGUGCCc || | | ||||||| auccuCAUA-AAUUCACGGa 2 16 41 59 [ce6:III:10428653-10428671:-] 0.4774 145 7 -11.26 -1.0775 MIMAT0015239 cel-miR-786* 176462 helicase cauuuAUGGGGU-UGAC-UAUAAGc |::|| : |:|| |||||| uuuucUGUCCAGUAUUGCAUAUUCc 2 19 356 380 [ce6:III:10428332-10428356:-] 0.4523 121 6 -11.74 -0.8019 MIMAT0015240 cel-miR-788* 176462 helicase gcuaagauuagGUAAAGg |||||| uguaauuccuaCAUUUCa 2 8 289 306 [ce6:III:10428406-10428423:-] 0.4523 120 6 -7.86 -0.1629 MIMAT0006584 cel-miR-1817 176462 helicase guacuauCUCUUCUGUAACCGau || || :|||||| uuuuuguGAAAAAUUAUUGGCac 3 17 386 408 [ce6:III:10428304-10428326:-] 0.4523 132 0 -8.86 -0.1176 MIMAT0006590 cel-miR-1823 176462 helicase aaugaggauuugugaAGGUCAu |||||| aacaauuguuuucugUCCAGUa 2 8 348 369 [ce6:III:10428343-10428364:-] 0.4523 120 6 -13.49 -0.1373 MIMAT0006768 cel-miR-1828 176462 helicase ugaUAGUGAAUUUACGA-AGGUCa | || ||: | || ||||| uaaAACAAUUGUUUUCUGUCCAGu 2 21 345 368 [ce6:III:10428344-10428367:-] 0.4523 120 0 -11.55 -0.9038 MIMAT0006769 cel-miR-1829a 176462 helicase uuaucucuuuaaggUUACCAac |||||| cauuuucacccaaaAAUGGUca 3 9 17 38 [ce6:III:10428674-10428695:-] 0.5400 120 0 -6.71 -0.1350 MIMAT0006776 cel-miR-1834 176462 helicase aaccUAGAGUU-ACCA--ACUAGAGa ||:|||| | | ||||||| ccaaAUUUCAAUUACUAGUGAUCUCc 2 20 157 182 [ce6:III:10428530-10428555:-] 0.4523 153 7 -15.95 -0.5330 MIMAT0011425 cel-miR-2207 176462 helicase gaauaUGUGUCAG-AGUUAAGUGu | |: || | ||||||| ggucaAAAUCCUCAUAAAUUCACg 2 19 34 57 [ce6:III:10428655-10428678:-] 0.4774 145 7 -11.57 -0.5296 MIMAT0011430 cel-miR-2208b-3p 176462 helicase acuucacaugguuuUAGACGUa ||||||| ccauccaucaucccAUCUGCAa 2 9 181 202 [ce6:III:10428510-10428531:-] 0.4523 140 7 -10.68 -0.6079 MIMAT0011432 cel-miR-2209a 176462 helicase acaucacAUUGGCGACUAGAGa | ||: ||||||| auuucaaUUACUAGUGAUCUCc 2 16 161 182 [ce6:III:10428530-10428551:-] 0.4523 147 7 -11.38 -0.5330 MIMAT0011458 cel-miR-2218b* 176462 helicase agAGUGAUGUUUGAUGUUUAAa |:||| : :| |||||| uuUUACUUUUUUUUCCAAAUUu 2 21 143 164 [ce6:III:10428548-10428569:-] 0.4523 124 6 -9.55 -0.1000 MIMAT0011462 cel-miR-2220 176462 helicase gacauucaggugUUUGUUAACu ||||||||| auauucuuuguaAAACAAUUGu 2 11 335 356 [ce6:III:10428356-10428377:-] 0.4523 150 7 -10.26 -1.1124 MIMAT0011463 cel-miR-2221 176462 helicase ugaucgccagaccauAGUGAAc |||||| ---------------UCACUUu 2 8 1 7 [ce6:III:10428705-10428711:-] 0.6027 120 6 -4.95 -0.1091 MIMAT0014446 cel-miR-2953-5p 176462 helicase uaaaagugcuuguGAAGACAu :|||||| ccauauauauuuuUUUCUGUa 2 9 272 292 [ce6:III:10428420-10428440:-] 0.4523 124 6 -10.24 -0.3062 MIMAT0014447 cel-miR-2953-3p 176462 helicase cgaugucUUCUCGAUCACUAGu || ||||||||| aaauuucAAUUACUAGUGAUCu 2 16 159 180 [ce6:III:10428532-10428553:-] 0.4523 151 7 -14.67 -0.7598 MIMAT0000053 cel-miR-80 176462 helicase agccgAAAGU---UGAUUACUAGAGu ||||| ||||:||||||| ccaaaUUUCAAUUACUAGUGAUCUCc 2 19 157 182 [ce6:III:10428530-10428555:-] 0.4523 169 7 -20.30 -0.5330 MIMAT0000054 cel-miR-81 176462 helicase ugaucgaaAGUGCU-ACUAGAGu |:|| | ||||||| aauuucaaUUACUAGUGAUCUCc 2 15 160 182 [ce6:III:10428530-10428552:-] 0.4523 149 7 -11.88 -0.5295 MIMAT0000055 cel-miR-82 176462 helicase ugaccgaaAGUGCU-ACUAGAGu |:|| | ||||||| aauuucaaUUACUAGUGAUCUCc 2 15 160 182 [ce6:III:10428530-10428552:-] 0.4523 149 7 -11.88 -0.5295 MIMAT0000058 cel-miR-85 176462 helicase cgUGCUGAAAA----GUU---UAUGAAACAu |: |:|||| ||| || |||||| ucAUCAUUUUUAUCCCAAAAUAUUCUUUGUa 2 23 316 346 [ce6:III:10428366-10428396:-] 0.4523 124 6 -12.99 -0.2438 MIMAT0000059 cel-miR-86 176462 helicase cugacaccguuucguaAGUGAAu |||||| ----------------UCACUUu 2 8 1 7 [ce6:III:10428705-10428711:-] 0.6027 120 6 -5.25 -0.1091 MIMAT0000291 cel-miR-236 176462 helicase ucgcAGUAAUGGAC-UGUCAUAAu |::|| :||| ||||||| acaaUUGUUUUCUGUCCAGUAUUg 2 20 349 372 [ce6:III:10428340-10428363:-] 0.4523 158 7 -16.32 -0.3769 MIMAT0000697 cel-miR-355 176462 helicase guaucgaguccgAUUUUGUUu |||||||| aaauauucuuugUAAAACAAu 2 10 333 353 [ce6:III:10428359-10428379:-] 0.4523 145 7 -7.29 -0.9352 MIMAT0004220 cel-miR-785 176462 helicase agauguguuuuguuaAGUGAAu |||||| ---------------UCACUUu 2 8 1 7 [ce6:III:10428705-10428711:-] 0.6027 120 6 -5.25 -0.1091 MIMAT0004227 cel-miR-792 176462 helicase agacuuucaacuucucUAAAGUu |||||| uuacuuuuuuuuccaaAUUUCAa 2 8 145 167 [ce6:III:10428545-10428567:-] 0.4523 120 6 -4.72 -0.1411 MIMAT0004227 cel-miR-792 176462 helicase agacuuucaacuucucUAAAGUu |||||| uguuucuuuuuucaaaAUUUCAa 2 8 228 250 [ce6:III:10428462-10428484:-] 0.4523 120 6 -4.72 -0.4167 MIMAT0004227 cel-miR-792 176462 helicase agacuuucaacuucucUAAAGUu |||||| uuucuguaauuccuacAUUUCAa 2 8 285 307 [ce6:III:10428405-10428427:-] 0.4523 120 6 -7.28 -0.2250 MIMAT0004232 cel-miR-797 176462 helicase agAAGAG---UAACACUAACGA-CACUAu ||:|| ||| ||| || ||||| uuUUUUCCAAAUUUCAAUUACUAGUGAUc 2 24 151 179 [ce6:III:10428533-10428561:-] 0.4523 126 0 -8.20 -0.6206

DNA & RNA Element - miRNAMap Gene Name Mature miRNA Target Start Target End miRNA 3-5 Alignment Target 5-3 M03C11.8 cel-miR-236 353 374 UCGCAGUAAUGGACU-GUCAUAAU- :||: :||| |||||||: -UUGUUU---UCUGUCCAGUAUUGC M03C11.8 cel-miR-264 185 202 GUAUUGUUGUU-GGUGGGCGG || || |||:|:|| ----CCAUCAUCCCAUCUGCA M03C11.8 cel-miR-270 178 196 -GAGGUGACGAUGUAGUACGG- |||||: |||||| || UCUCCAUC----CAUCAUCCCA M03C11.8 cel-miR-56* 23 49 AUGUUGGGU-UUUACC-----UAGGCGGU- ||||| |||||| |||| :|| ---CACCCAAAAAUGGUCAAAAUCC-UCAU M03C11.8 cel-miR-61 64 89 CUACUCAUU-----GCCAAGAUCAGU- |:| ||| |:|||||| --CGGGGACAAAAUCGGAUUUAGUCAG M03C11.8 cel-miR-789 32 71 UGUUAACCAC---UGGG------------UC----CGUCCCU |||| |:|| :| ||:|||| ----AUGGUCAAAAUCCUCAUAAAUUCACGGAAAAGCGGGGAC M03C11.8 cel-miR-80 161 183 AGCCGAAAGU---UGAUUACUAGAGU ||||| ||||:||||||| ----AUUUCAAUUACUAGUGAUCUCC M03C11.8 cel-miR-81 161 183 UGAUCGAAAGUGC-----UACUAGAGU ||||| :||||||| -----AUUUCAAUUACUAGUGAUCUCC M03C11.8 cel-miR-82 161 183 UGACCGAAAGUGC-----UACUAGAGU ||||| :||||||| -----AUUUCAAUUACUAGUGAUCUCC M03C11.8 cel-miR-87 203 226 CGUGUGGACUUUGAAA-CGAGUG- ||||:| |||| |:|| | -AACACUUUAAACGUUGGUUCUCA M03C11.8 cel-miR-236 349 372 ucgcAGUAAUGGAC-UGUCAUAAu |::|| :||| ||||||| acaaTTGTTTTCTGTCCAGTATTg M03C11.8 cel-miR-264 182 201 GUAUUGUUGU-UGGUGGGCGg ||| || || |||:|:|| CAT-CCATCATCCCATCTGCa M03C11.8 cel-miR-270 179 194 GAGGUGACGAUGUAGUACGG ||||| | |||||| || CTCCA----TCCATCATCCC M03C11.8 cel-miR-56* 21 48 AUGUUGGGUUUUACC-----UAGGCGgu | || || ||||||| |||| | TTCACCCAAAAATGGTCAAAATCCTCat M03C11.8 cel-miR-61 65 87 CUACUCAUU--GCCAAGAUCAGU |: || || ||| |:|||||| GGGGACAAAATCGGATTTAGTCA M03C11.8 cel-miR-789 47 69 uguuaaccacugggucCGUCCCU ||:|||| ataaattcacggaaaaGCGGGGA M03C11.8 cel-miR-80 157 182 agccgAAAGU---UGAUUACUAGAGu ||||| ||||:||||||| ccaaaTTTCAATTACTAGTGATCTCc M03C11.8 cel-miR-87 202 226 cgUGUGGACUUUGAAAC---GAGUg ||||:| |||| ||| |||| aaACACTTTAAACGTTGGTTCTCAa M03C11.8 cel-miR-236 365 372 UCGC-------------------AGUAAUGGACU-GUCAUAAU | || :||| |||||||: CCAAAAUAUUCUUUGUAAAACAAUUGUUUUCUGUCCAGUAUUGC M03C11.8 cel-miR-80 175 182 ----------------AGCCG-AAAGU---UGAUUACUAGAGU || ||||| ||||:||||||| UAAUUUUACUUUUUUUUCCAAAUUUCAAUUACUAGUGAUCUCC M03C11.8 cel-miR-81 175 182 UGAUCGAA--------------------AGUGC-UACUAGAGU |:|| :||||||| UAAUUUUACUUUUUUUUCCAAAUUUCAAUUACUAGUGAUCUCC M03C11.8 cel-miR-82 175 182 UGACCGAA--------------------AGUGC-UACUAGAGU |:|| :||||||| UAAUUUUACUUUUUUUUCCAAAUUUCAAUUACUAGUGAUCUCC

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score M03C11.8 RAID00014877 cel-miR-355-5p miRNA MIMAT0000697 M03C11.8 mRNA 176462 Prediction 0.1828 M03C11.8 RAID00260555 cel-miR-81-3p miRNA MIMAT0000054 M03C11.8 mRNA 176462 Prediction 0.1828 M03C11.8 RAID00710847 cel-miR-82-3p miRNA MIMAT0000055 M03C11.8 mRNA 176462 Prediction 0.1828 M03C11.8 RAID00838246 cel-miR-792-3p miRNA MIMAT0004227 M03C11.8 mRNA 176462 Prediction 0.1828 M03C11.8 RAID01410908 cel-miR-785-3p miRNA MIMAT0004220 M03C11.8 mRNA 176462 Prediction 0.1828 M03C11.8 RAID01441406 cel-miR-86-5p miRNA MIMAT0000059 M03C11.8 mRNA 176462 Prediction 0.1828 M03C11.8 RAID02035885 cel-miR-85-3p miRNA MIMAT0000058 M03C11.8 mRNA 176462 Prediction 0.1828 M03C11.8 RAID02916754 cel-miR-797-5p miRNA MIMAT0004232 M03C11.8 mRNA 176462 Prediction 0.1828 M03C11.8 RAID03201117 cel-miR-236-3p miRNA MIMAT0000291 M03C11.8 mRNA 176462 Prediction 0.1828 M03C11.8 RAID03902602 cel-miR-80-3p miRNA MIMAT0000053 M03C11.8 mRNA 176462 Prediction 0.1828