DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0015103 cel-miR-61* 178156 ddb-1 ccugauucggggcAUUGGGu |||||| cuuuucuuuuuucUAACCCu 2 8 332 351 [ce6:IV:12114821-12114840:-] 0.6061 120 6 -11.00 -0.2179 MIMAT0015116 cel-miR-240* 178156 ddb-1 guaagaUCAGAGUUUUAGGAgc ||| |::||||||| caguaaAGU-UUGAAAUCCUag 3 17 237 257 [ce6:IV:12114915-12114935:-] 0.6061 138 0 -13.15 -0.2415 MIMAT0000311 cel-miR-256 178156 ddb-1 augucagaagauacGUAAGGu |||||| aucgucucgacuauCAUUCCa 2 8 3 23 [ce6:IV:12115149-12115169:-] 0.5492 120 6 -17.63 -0.1128 MIMAT0006586 cel-miR-1819 178156 ddb-1 agGUAGUUCGAGUUAGUAAGGu |:|| | | |||||||| auCGUCUCG-ACUAUCAUUCCa 2 21 3 23 [ce6:IV:12115149-12115169:-] 0.5492 150 7 -19.61 -1.0159 MIMAT0006772 cel-miR-1830 178156 ddb-1 cgGAUCUUUUGCACUUUGGAgc ||| :|| | |||||| guCUAUCGAA-AUAAAACCUaa 3 21 366 386 [ce6:IV:12114786-12114806:-] 0.6061 130 0 -9.90 -0.2214 MIMAT0011425 cel-miR-2207 178156 ddb-1 gaaUAUGUGUCAGAGUUAAGUgu || :::| | |:|||||| ucgAUUUGUAAUAUUAAUUCAaa 3 21 76 98 [ce6:IV:12115074-12115096:-] 0.5492 140 0 -8.99 -0.2931 MIMAT0011432 cel-miR-2209a 178156 ddb-1 acAUCACAUUGGCGACU-AGAGa || ||| ||| ||| |||| auUACUGU-ACC-AUGAUUCUCg 2 21 24 44 [ce6:IV:12115128-12115148:-] 0.5492 120 0 -10.65 -0.9780 MIMAT0011454 cel-miR-2209b 178156 ddb-1 acuucguGUUGGCGAG-UAGAGa :|||| ||| ||||| uuuuuucUAACC-CUCUAUCUCg 2 16 338 359 [ce6:IV:12114813-12114834:-] 0.6061 121 0 -15.32 -1.1905 MIMAT0011458 cel-miR-2218b* 178156 ddb-1 agaGUGAUGUUUGAUGUUUAAa :| ||: || | |||||| uugUAAUAUUAA-UUCAAAUUu 2 20 81 101 [ce6:IV:12115071-12115091:-] 0.5492 125 6 -6.26 -0.1707 MIMAT0011458 cel-miR-2218b* 178156 ddb-1 agagugauguuugauGUUUAAa |||||| ucuaccuuuucccccCAAAUUg 2 8 284 305 [ce6:IV:12114867-12114888:-] 0.6061 120 6 -5.42 -0.1221 MIMAT0000003 cel-miR-1 178156 ddb-1 auguaugaagaaauGUAAGGu |||||| aucgucucgacuauCAUUCCa 2 8 3 23 [ce6:IV:12115149-12115169:-] 0.5492 120 6 -12.32 -0.1162 MIMAT0000035 cel-miR-63 178156 ddb-1 aaAGGUUGAGCGAAGUCACAG-UAu ||:| ||||:||: ||||| || ccUCUAUCUCGUUUU-GUGUCUAUc 2 23 349 372 [ce6:IV:12114800-12114823:-] 0.6061 140 0 -20.69 -1.0379 MIMAT0000043 cel-miR-71 178156 ddb-1 agugauggguacAGAAAGu |||||| uuguuuuuuucuUCUUUCu 2 8 303 321 [ce6:IV:12114851-12114869:-] 0.6061 120 6 -5.49 -0.1738 MIMAT0000043 cel-miR-71 178156 ddb-1 agugauggguacAGAAAGu |||||| ucuuucuuuuccUCUUUCu 2 8 315 333 [ce6:IV:12114839-12114857:-] 0.6061 120 6 -8.28 -0.2285 MIMAT0000054 cel-miR-81 178156 ddb-1 ugAUCGAAAGUGCUACU-AGAGu || || | || |||| |||| auUA-CUGU-ACCAUGAUUCUCg 2 21 24 44 [ce6:IV:12115128-12115148:-] 0.5492 120 0 -13.81 -0.9871 MIMAT0000310 cel-miR-254 178156 ddb-1 ggaUGUCAGCGCUU--UCUAAACGu |:: || : || ||||||: gugAUGAUCAUUAACUCGAUUUGUa 2 21 61 85 [ce6:IV:12115087-12115111:-] 0.5492 127 0 -7.25 -0.1766 MIMAT0000310 cel-miR-254 178156 ddb-1 ggaugucagcgcuuuCUAAACgu |||||| uauuaauucaaauuuGAUUUGga 3 9 87 109 [ce6:IV:12115063-12115085:-] 0.5492 120 0 -6.03 -0.2480 MIMAT0004216 cel-miR-255 178156 ddb-1 gaCAUUUUUUAGAGAAGUCAaa | | |||| :|||||| uuGAACAAAAGAAUUUCAGUaa 3 21 221 242 [ce6:IV:12114930-12114951:-] 0.4857 136 0 -8.41 -0.1598 MIMAT0004231 cel-miR-796 178156 ddb-1 aaugAUUGGAGUUGAU-GUAAGGu | ::|||:|||| |||||| -uuaUCGUCUCGACUAUCAUUCCa 2 20 1 23 [ce6:IV:12115149-12115171:-] 0.5492 139 6 -23.99 -1.1058

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score ddb-1 RAID00193636 cel-miR-796 miRNA MIMAT0004231 ddb-1 mRNA 178156 CLIP-seq//Prediction 0.6308 ddb-1 RAID01043552 cel-miR-1-3p miRNA MIMAT0000003 ddb-1 mRNA 178156 CLIP-seq//Prediction 0.6308 ddb-1 RAID02606164 cel-miR-81-3p miRNA MIMAT0000054 ddb-1 mRNA 178156 CLIP-seq//Prediction 0.6308 ddb-1 RAID02879796 cel-miR-254-3p miRNA MIMAT0000310 ddb-1 mRNA 178156 CLIP-seq//Prediction 0.6308 ddb-1 RAID02973330 cel-miR-255-3p miRNA MIMAT0004216 ddb-1 mRNA 178156 Prediction 0.1828 ddb-1 RAID03117860 cel-miR-63-3p miRNA MIMAT0000035 ddb-1 mRNA 178156 Prediction 0.1828 ddb-1 RAID03391574 cel-miR-71-5p miRNA MIMAT0000043 ddb-1 mRNA 178156 Prediction 0.1828 ddb-1 RAID04035244 cel-miR-256 miRNA MIMAT0000311 ddb-1 mRNA 178156 CLIP-seq 0.5483